Procambarus clarkii strain Jiangsu linkage group LG44, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035516.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
tyrosine-protein phosphatase non-receptor type 2-like, transcript variant X3
tyrosine-protein phosphatase non-receptor type 2-like, transcript variant X2
tyrosine-protein phosphatase non-receptor type 2-like isoform X3
tyrosine-protein phosphatase non-receptor type 2-like isoform X2
tyrosine-protein phosphatase non-receptor type 2-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
tyrosine-protein phosphatase non-receptor type 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 93 samples with support for all annotated introns
tyrosine-protein phosphatase non-receptor type 2-like isoform X5
tyrosine-protein phosphatase non-receptor type 2-like isoform X1
tyrosine-protein phosphatase non-receptor type 2-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
tyrosine-protein phosphatase non-receptor type 2-like isoform X4
kinesin-like protein KIF13A, transcript variant X6
kinesin-like protein KIF13A, transcript variant X2
kinesin-like protein KIF13A, transcript variant X4
kinesin-like protein KIF13A, transcript variant X3
kinesin-like protein KIF13A, transcript variant X5
kinesin-like protein KIF13A, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123765422, transcript variant X2
uncharacterized LOC123765422, transcript variant X1
uncharacterized LOC123765422, transcript variant X3
uncharacterized protein LOC123765422 isoform X1
uncharacterized LOC123765422, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
uncharacterized protein LOC123765422 isoform X2
transcription termination factor Rho-like
proteasome adapter and scaffold protein ECM29-like, transcript variant X1
proteasome adapter and scaffold protein ECM29-like
proteasome adapter and scaffold protein ECM29-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90% coverage of the annotated genomic feature by RNAseq alignments
low density lipoprotein receptor adapter protein 1-like, transcript variant X2
low density lipoprotein receptor adapter protein 1-like, transcript variant X1
low density lipoprotein receptor adapter protein 1-like isoform X1
low density lipoprotein receptor adapter protein 1-like isoform X2
active breakpoint cluster region-related protein-like, transcript variant X1
active breakpoint cluster region-related protein-like isoform X1
active breakpoint cluster region-related protein-like, transcript variant X2
active breakpoint cluster region-related protein-like, transcript variant X3
active breakpoint cluster region-related protein-like, transcript variant X4
active breakpoint cluster region-related protein-like isoform X2
protein fem-1 homolog C-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 90 samples with support for all annotated introns
protein fem-1 homolog C-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
pyruvate carboxylase, mitochondrial-like, transcript variant X1
pyruvate carboxylase, mitochondrial-like, transcript variant X2
pyruvate carboxylase, mitochondrial-like, transcript variant X4
pyruvate carboxylase, mitochondrial-like, transcript variant X7
pyruvate carboxylase, mitochondrial-like, transcript variant X8
pyruvate carboxylase, mitochondrial-like, transcript variant X5
pyruvate carboxylase, mitochondrial-like, transcript variant X6
pyruvate carboxylase, mitochondrial-like, transcript variant X3
pyruvate carboxylase, mitochondrial-like
uncharacterized LOC123765430, transcript variant X2
uncharacterized LOC123765430, transcript variant X1
uncharacterized LOC123765430, transcript variant X3
uncharacterized LOC123765430, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC123765431
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
orphan steroid hormone receptor 2-like, transcript variant X1
orphan steroid hormone receptor 2-like, transcript variant X4
orphan steroid hormone receptor 2-like, transcript variant X5
orphan steroid hormone receptor 2-like, transcript variant X6
orphan steroid hormone receptor 2-like, transcript variant X3
orphan steroid hormone receptor 2-like, transcript variant X2
uncharacterized transmembrane protein DDB_G0289901-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
repetitive proline-rich cell wall protein 2-like
orphan steroid hormone receptor 2-like isoform X1
orphan steroid hormone receptor 2-like isoform X2
orphan steroid hormone receptor 2-like isoform X3
orphan steroid hormone receptor 2-like isoform X4
translocation protein SEC62-like, transcript variant X1
translocation protein SEC62-like isoform X1
translocation protein SEC62-like, transcript variant X2
translocation protein SEC62-like isoform X2
tetratricopeptide repeat protein 36 homolog
basic salivary proline-rich protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
GTPase-activating protein skywalker-like, transcript variant X2
GTPase-activating protein skywalker-like, transcript variant X3
GTPase-activating protein skywalker-like, transcript variant X1
GTPase-activating protein skywalker-like isoform X3
GTPase-activating protein skywalker-like isoform X2
GTPase-activating protein skywalker-like isoform X1
E3 ubiquitin-protein ligase UBR2-like, transcript variant X4
E3 ubiquitin-protein ligase UBR2-like, transcript variant X1
E3 ubiquitin-protein ligase UBR2-like, transcript variant X3
E3 ubiquitin-protein ligase UBR2-like, transcript variant X2
E3 ubiquitin-protein ligase UBR2-like isoform X2
E3 ubiquitin-protein ligase UBR2-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
corrinoid adenosyltransferase-like, transcript variant X1
corrinoid adenosyltransferase-like, transcript variant X2
ras-related GTP-binding protein A, transcript variant X1
ras-related GTP-binding protein A, transcript variant X2
ras-related GTP-binding protein A isoform X1
ras-related GTP-binding protein A isoform X2
lysosomal thioesterase PPT2-A-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
lysosomal thioesterase PPT2-A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
lysosomal thioesterase PPT2-A-like isoform X2
lysosomal thioesterase PPT2-A-like isoform X1
solute carrier family 22 member 15-like, transcript variant X1
solute carrier family 22 member 15-like, transcript variant X3
solute carrier family 22 member 15-like, transcript variant X2
solute carrier family 22 member 15-like, transcript variant X5
solute carrier family 22 member 15-like isoform X1
solute carrier family 22 member 15-like, transcript variant X4
solute carrier family 22 member 15-like isoform X2
ubiquitin-conjugating enzyme E2 K-like, transcript variant X2
ubiquitin-conjugating enzyme E2 K-like, transcript variant X1
ubiquitin-conjugating enzyme E2 K-like isoform X2
ubiquitin-conjugating enzyme E2 K-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized LOC123765449, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized LOC123765449, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized LOC123765449, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized protein LOC123765449 isoform X1
uncharacterized protein LOC123765449 isoform X2
von Willebrand factor A domain-containing protein 7-like, transcript variant X1
von Willebrand factor A domain-containing protein 7-like isoform X1
von Willebrand factor A domain-containing protein 7-like, transcript variant X2
von Willebrand factor A domain-containing protein 7-like isoform X2
receptor-type tyrosine-protein phosphatase H-like, transcript variant X1
receptor-type tyrosine-protein phosphatase H-like isoform X1
receptor-type tyrosine-protein phosphatase H-like, transcript variant X2
receptor-type tyrosine-protein phosphatase H-like isoform X2
phosphatidylinositol phosphatase PTPRQ-like
glutamate receptor ionotropic, delta-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
poly [ADP-ribose] polymerase tankyrase-2-like, transcript variant X1
poly [ADP-ribose] polymerase tankyrase-2-like, transcript variant X2
poly [ADP-ribose] polymerase tankyrase-2-like, transcript variant X3
poly [ADP-ribose] polymerase tankyrase-2-like, transcript variant X4
poly [ADP-ribose] polymerase tankyrase-2-like isoform X1
poly [ADP-ribose] polymerase tankyrase-2-like isoform X3
poly [ADP-ribose] polymerase tankyrase-2-like isoform X4
poly [ADP-ribose] polymerase tankyrase-2-like, transcript variant X6
poly [ADP-ribose] polymerase tankyrase-2-like, transcript variant X5
poly [ADP-ribose] polymerase tankyrase-2-like isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
eIF-2-alpha kinase GCN2-like, transcript variant X4
eIF-2-alpha kinase GCN2-like, transcript variant X1
eIF-2-alpha kinase GCN2-like, transcript variant X2
eIF-2-alpha kinase GCN2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 53 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 74 samples with support for all annotated introns
high-affinity choline transporter 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123765462, transcript variant X2
uncharacterized LOC123765462, transcript variant X1
uncharacterized protein LOC123765462 isoform X2
uncharacterized protein LOC123765462 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC123765466, transcript variant X4
uncharacterized LOC123765466, transcript variant X3
uncharacterized LOC123765466, transcript variant X6
uncharacterized LOC123765466, transcript variant X2
uncharacterized LOC123765466, transcript variant X8
uncharacterized LOC123765466, transcript variant X1
uncharacterized LOC123765466, transcript variant X7
uncharacterized LOC123765466, transcript variant X9
uncharacterized LOC123765466, transcript variant X5
uncharacterized LOC123765466, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized protein LOC123765466 isoform X1
uncharacterized protein LOC123765466 isoform X2
uncharacterized protein LOC123765466 isoform X5
uncharacterized protein LOC123765466 isoform X3
uncharacterized protein LOC123765466 isoform X4
putative mediator of RNA polymerase II transcription subunit 26, transcript variant X1
putative mediator of RNA polymerase II transcription subunit 26, transcript variant X3
putative mediator of RNA polymerase II transcription subunit 26, transcript variant X4
putative mediator of RNA polymerase II transcription subunit 26, transcript variant X2
putative mediator of RNA polymerase II transcription subunit 26
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
BCAS3 microtubule associated cell migration factor-like, transcript variant X2
BCAS3 microtubule associated cell migration factor-like, transcript variant X4
BCAS3 microtubule associated cell migration factor-like, transcript variant X3
BCAS3 microtubule associated cell migration factor-like, transcript variant X5
BCAS3 microtubule associated cell migration factor-like, transcript variant X1
BCAS3 microtubule associated cell migration factor-like isoform X3
BCAS3 microtubule associated cell migration factor-like isoform X2
BCAS3 microtubule associated cell migration factor-like isoform X4
BCAS3 microtubule associated cell migration factor-like isoform X1
essential MCU regulator, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
L-2-hydroxyglutarate dehydrogenase, mitochondrial-like
serine/threonine-protein kinase pakD-like, transcript variant X5
serine/threonine-protein kinase pakD-like, transcript variant X2
serine/threonine-protein kinase pakD-like, transcript variant X1
serine/threonine-protein kinase pakD-like, transcript variant X3
serine/threonine-protein kinase pakD-like, transcript variant X4
serine/threonine-protein kinase pakD-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
major facilitator superfamily domain-containing protein 1-like, transcript variant X2
major facilitator superfamily domain-containing protein 1-like, transcript variant X1
major facilitator superfamily domain-containing protein 1-like isoform X2
major facilitator superfamily domain-containing protein 1-like isoform X1
uncharacterized LOC123765480, transcript variant X2
uncharacterized LOC123765480, transcript variant X1
S-adenosylmethionine mitochondrial carrier protein-like, transcript variant X1
S-adenosylmethionine mitochondrial carrier protein-like, transcript variant X2
S-adenosylmethionine mitochondrial carrier protein-like, transcript variant X3
S-adenosylmethionine mitochondrial carrier protein-like
peptidyl-prolyl cis-trans isomerase-like
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X4
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X2
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X3
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X6
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X1
guanine nucleotide-binding protein G(q) subunit alpha, transcript variant X5
guanine nucleotide-binding protein G(q) subunit alpha isoform X6
guanine nucleotide-binding protein G(q) subunit alpha isoform X2
guanine nucleotide-binding protein G(q) subunit alpha isoform X5
guanine nucleotide-binding protein G(q) subunit alpha isoform X1
guanine nucleotide-binding protein G(q) subunit alpha isoform X3
guanine nucleotide-binding protein G(q) subunit alpha isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
CDK5 and ABL1 enzyme substrate 2-like, transcript variant X2
CDK5 and ABL1 enzyme substrate 2-like, transcript variant X1
CDK5 and ABL1 enzyme substrate 2-like isoform X2
CDK5 and ABL1 enzyme substrate 2-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
ESX-1 secretion-associated protein EspI-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized protein DKFZp434B061-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
transfer RNA serine (anticodon UGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 10% coverage of the annotated genomic feature by RNAseq alignments
endoplasmic reticulum-Golgi intermediate compartment protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
FGFR1 oncogene partner 2 homolog, transcript variant X2
FGFR1 oncogene partner 2 homolog, transcript variant X1
FGFR1 oncogene partner 2 homolog isoform X2
FGFR1 oncogene partner 2 homolog isoform X1
general transcription factor IIH subunit 2-like
uncharacterized LOC123765495, transcript variant X3
uncharacterized LOC123765495, transcript variant X1
uncharacterized LOC123765495, transcript variant X5
uncharacterized LOC123765495, transcript variant X2
uncharacterized LOC123765495, transcript variant X4
uncharacterized protein LOC123765495 isoform X1
uncharacterized protein LOC123765495 isoform X2
uncharacterized protein LOC123765495 isoform X4
uncharacterized protein LOC123765495 isoform X3
beta-secretase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
beta-secretase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
protein DENND6A-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
protein DENND6A-like, transcript variant X1
E3 ubiquitin-protein transferase MAEA-like
uncharacterized protein C11orf24 homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
heat shock protein 30C-like, transcript variant X1
heat shock protein 30C-like, transcript variant X2
heat shock protein 30C-like, transcript variant X3
AP-3 complex subunit delta-1-like, transcript variant X2
AP-3 complex subunit delta-1-like, transcript variant X1
AP-3 complex subunit delta-1-like isoform X1
AP-3 complex subunit delta-1-like isoform X2
uncharacterized LOC123765507, transcript variant X2
uncharacterized LOC123765507, transcript variant X1
uncharacterized protein LOC123765507 isoform X2
uncharacterized protein LOC123765507 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Y-box factor homolog, transcript variant X1
Y-box factor homolog, transcript variant X4
Y-box factor homolog, transcript variant X3
Y-box factor homolog, transcript variant X6
Y-box factor homolog, transcript variant X2
Y-box factor homolog, transcript variant X5
transcriptional coactivator YAP1-A-like, transcript variant X1
transcriptional coactivator YAP1-A-like, transcript variant X2
transcriptional coactivator YAP1-A-like isoform X1
transcriptional coactivator YAP1-A-like isoform X2
L-serine dehydratase/L-threonine deaminase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
dual oxidase maturation factor 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
dual oxidase maturation factor 1-like isoform X2
dual oxidase maturation factor 1-like, transcript variant X1
dual oxidase maturation factor 1-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 99% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized protein in mobD 3'region-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
C-type lectin lectoxin-Phi1-like, transcript variant X2
C-type lectin lectoxin-Phi1-like, transcript variant X1
C-type lectin lectoxin-Phi1-like isoform X2
C-type lectin lectoxin-Phi1-like isoform X1
acyl-CoA dehydrogenase family member 11-like
uncharacterized LOC123765517, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
uncharacterized LOC123765517, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
uncharacterized protein LOC123765517 isoform X1
uncharacterized protein LOC123765517 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
galactose-specific lectin nattectin-like, transcript variant X3
galactose-specific lectin nattectin-like, transcript variant X2
galactose-specific lectin nattectin-like, transcript variant X1
galactose-specific lectin nattectin-like isoform X1
galactose-specific lectin nattectin-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
probable serine/threonine-protein kinase tsuA
high affinity nerve growth factor receptor-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
steroid transmembrane transporter SLC22A24-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
2-aminomuconic semialdehyde dehydrogenase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
AF4/FMR2 family member lilli-like, transcript variant X2
AF4/FMR2 family member lilli-like, transcript variant X1
AF4/FMR2 family member lilli-like, transcript variant X5
AF4/FMR2 family member lilli-like, transcript variant X3
AF4/FMR2 family member lilli-like, transcript variant X4
AF4/FMR2 family member lilli-like isoform X5
uncharacterized protein LOC123765521 isoform X3
AF4/FMR2 family member lilli-like isoform X4
uncharacterized protein LOC123765521 isoform X2
uncharacterized protein LOC123765521 isoform X1
AF4/FMR2 family member lilli-like, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
AF4/FMR2 family member lilli-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
AF4/FMR2 family member lilli-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
AF4/FMR2 family member lilli-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized protein LOC123765521 isoform X7
uncharacterized protein LOC123765521 isoform X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
furin-like protease 2, transcript variant X2
furin-like protease 2, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
beta-1,3-galactosyltransferase brn-like, transcript variant X2
beta-1,3-galactosyltransferase brn-like, transcript variant X1
uncharacterized LOC123765525, transcript variant X3
uncharacterized LOC123765525, transcript variant X1
uncharacterized LOC123765525, transcript variant X2
uncharacterized LOC123765525, transcript variant X4
uncharacterized protein LOC123765525 isoform X1
uncharacterized protein LOC123765525 isoform X2
uncharacterized LOC123765526, transcript variant X2
uncharacterized LOC123765526, transcript variant X1
uncharacterized LOC123765526, transcript variant X3
uncharacterized LOC123765526, transcript variant X4
uncharacterized LOC123765526, transcript variant X5
uncharacterized protein LOC123765526 isoform X1
uncharacterized protein LOC123765526 isoform X2
uncharacterized protein LOC123765526 isoform X3
uncharacterized protein LOC123765526 isoform X4
uncharacterized LOC123765628, transcript variant X1
uncharacterized LOC123765628, transcript variant X2
uncharacterized LOC123765630, transcript variant X1
uncharacterized LOC123765630, transcript variant X2
uncharacterized protein LOC123765630 isoform X1
uncharacterized protein LOC123765630 isoform X2
transfer RNA histidin (anticodon GUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 59% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 30% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 31% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 70% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 83% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 66% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
aminopeptidase N-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
aminopeptidase N-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 2 bases at 2 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: UPF0746 protein DDB_G0281095-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 371 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
activating signal cointegrator 1 complex subunit 2 homolog
sodium/potassium/calcium exchanger 1-like
COORDINATES: nucleotide motif:Rfam:12.0:RF00579
galactose-specific cell agglutination protein gsf2-like
complement C1q-like protein 4, transcript variant X2
complement C1q-like protein 4, transcript variant X3
complement C1q-like protein 4, transcript variant X1
complement C1q-like protein 4 isoform X2
complement C1q-like protein 4 isoform X1
cerebellin-2-like, transcript variant X3
cerebellin-2-like, transcript variant X4
cerebellin-2-like, transcript variant X2
cerebellin-2-like, transcript variant X1
cerebellin-1-like, transcript variant X1
cerebellin-1-like, transcript variant X2
polycystic kidney disease protein 1-like 3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized protein DDB_G0290685-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
similar to RNA sequence, mRNA (same species):INSD:MG452688.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 122 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 122 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
lactoylglutathione lyase-like, transcript variant X1
lactoylglutathione lyase-like, transcript variant X3
lactoylglutathione lyase-like, transcript variant X2
serine/threonine-protein kinase par-1-like, transcript variant X1
serine/threonine-protein kinase par-1-like isoform X1
serine/threonine-protein kinase par-1-like, transcript variant X2
inner centromere protein A-like isoform X2
uncharacterized PE-PGRS family protein PE_PGRS46-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
E3 ubiquitin-protein ligase Siah1-like, transcript variant X2
E3 ubiquitin-protein ligase Siah1-like, transcript variant X1
E3 ubiquitin-protein ligase Siah1-like isoform X1
E3 ubiquitin-protein ligase Siah1-like, transcript variant X3
E3 ubiquitin-protein ligase Siah1-like isoform X2
protein TANC2-like, transcript variant X1
protein TANC2-like, transcript variant X4
protein TANC2-like, transcript variant X2
protein TANC2-like, transcript variant X6
protein TANC2-like, transcript variant X3
protein TANC2-like, transcript variant X5
uncharacterized LOC123765545, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC123765545, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123765545, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123765545, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC123765545, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
uncharacterized LOC123765545, transcript variant X4
uncharacterized LOC123765545, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123765545, transcript variant X8
uncharacterized protein LOC123765545 isoform X6
uncharacterized protein LOC123765545 isoform X3
uncharacterized protein LOC123765545 isoform X5
uncharacterized protein LOC123765545 isoform X4
uncharacterized protein LOC123765545 isoform X7
uncharacterized protein LOC123765545 isoform X2
uncharacterized protein LOC123765545 isoform X1
uncharacterized protein LOC123765545 isoform X8
2-oxoglutarate and iron-dependent oxygenase domain-containing protein 2-like
protein mesh-like, transcript variant X1
protein mesh-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
protein mesh-like, transcript variant X2
GRB10-interacting GYF protein 2-like, transcript variant X1
GRB10-interacting GYF protein 2-like, transcript variant X5
GRB10-interacting GYF protein 2-like, transcript variant X3
GRB10-interacting GYF protein 2-like, transcript variant X2
GRB10-interacting GYF protein 2-like, transcript variant X7
GRB10-interacting GYF protein 2-like, transcript variant X8
GRB10-interacting GYF protein 2-like, transcript variant X4
GRB10-interacting GYF protein 2-like, transcript variant X6
GRB10-interacting GYF protein 2-like isoform X1
GRB10-interacting GYF protein 2-like isoform X3
GRB10-interacting GYF protein 2-like isoform X2
GRB10-interacting GYF protein 2-like isoform X5
GRB10-interacting GYF protein 2-like isoform X7
GRB10-interacting GYF protein 2-like isoform X8
GRB10-interacting GYF protein 2-like isoform X4
GRB10-interacting GYF protein 2-like isoform X6
graves disease carrier protein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
graves disease carrier protein-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
graves disease carrier protein-like isoform X2
graves disease carrier protein-like isoform X1
graves disease carrier protein-like, transcript variant X4
graves disease carrier protein-like, transcript variant X3
graves disease carrier protein-like isoform X3
graves disease carrier protein-like isoform X4
putative leucine-rich repeat-containing protein DDB_G0290503, transcript variant X2
putative leucine-rich repeat-containing protein DDB_G0290503, transcript variant X1
putative leucine-rich repeat-containing protein DDB_G0290503 isoform X2
putative leucine-rich repeat-containing protein DDB_G0290503 isoform X1
uncharacterized LOC123765555, transcript variant X1
uncharacterized LOC123765555, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
uncharacterized PE-PGRS family protein PE_PGRS54-like
chromosome alignment-maintaining phosphoprotein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
ADP-ribosylation factor-like protein 6-interacting protein 4