Procambarus clarkii strain Jiangsu linkage group LG37, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035509.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 79% coverage of the annotated genomic feature by RNAseq alignments
leucine-rich repeat-containing protein 57-like
COORDINATES: polyA evidence [ECO:0006239]
F-box only protein 21-like, transcript variant X1
F-box only protein 21-like, transcript variant X2
dolichol-phosphate mannosyltransferase subunit 1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC123763786, transcript variant X1
uncharacterized LOC123763786, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ubiquinone biosynthesis O-methyltransferase, mitochondrial-like, transcript variant X1
ubiquinone biosynthesis O-methyltransferase, mitochondrial-like, transcript variant X3
ubiquinone biosynthesis O-methyltransferase, mitochondrial-like, transcript variant X4
ubiquinone biosynthesis O-methyltransferase, mitochondrial-like, transcript variant X2
ubiquinone biosynthesis O-methyltransferase, mitochondrial-like, transcript variant X5
ubiquinone biosynthesis O-methyltransferase, mitochondrial-like
RNA-binding protein squid-like, transcript variant X1
RNA-binding protein squid-like, transcript variant X4
RNA-binding protein squid-like, transcript variant X3
RNA-binding protein squid-like, transcript variant X2
RNA-binding protein squid-like isoform X1
RNA-binding protein squid-like isoform X2
RNA-binding protein squid-like isoform X3
RNA-binding protein squid-like isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
serine/threonine-protein kinase Genghis Khan-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized PPE family protein PPE62-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
glycine-rich cell wall structural protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
acetylcholine receptor subunit beta-type acr-3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
neuronal acetylcholine receptor subunit alpha-10-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 38% coverage of the annotated genomic feature by RNAseq alignments
ras-related protein Rab-7a, transcript variant X1
ras-related protein Rab-7a, transcript variant X2
eukaryotic translation initiation factor 3 subunit A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
ileal sodium/bile acid cotransporter-like
similar to RNA sequence (same species):INSD:GARH01005686.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 936 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 809 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
tetratricopeptide repeat protein 39B-like, transcript variant X1
tetratricopeptide repeat protein 39B-like, transcript variant X2
tetratricopeptide repeat protein 39B-like isoform X1
tetratricopeptide repeat protein 39B-like isoform X2
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 64% coverage of the annotated genomic feature by RNAseq alignments
tripartite motif-containing protein 59-like
tripartite motif-containing protein 65-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 78 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
inter-alpha-trypsin inhibitor heavy chain H4-like, transcript variant X2
inter-alpha-trypsin inhibitor heavy chain H4-like, transcript variant X1
inter-alpha-trypsin inhibitor heavy chain H4-like isoform X2
inter-alpha-trypsin inhibitor heavy chain H4-like isoform X1
solute carrier family 22 member 6-like, transcript variant X2
solute carrier family 22 member 6-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments
serine/threonine-protein kinase MAK-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
E3 ubiquitin-protein ligase HERC2-like, transcript variant X4
E3 ubiquitin-protein ligase HERC2-like, transcript variant X3
E3 ubiquitin-protein ligase HERC2-like, transcript variant X2
E3 ubiquitin-protein ligase HERC2-like, transcript variant X1
E3 ubiquitin-protein ligase HERC2-like isoform X4
E3 ubiquitin-protein ligase HERC2-like isoform X3
E3 ubiquitin-protein ligase HERC2-like isoform X2
E3 ubiquitin-protein ligase HERC2-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 89 samples with support for all annotated introns
ethanolamine kinase 1-like, transcript variant X4
ethanolamine kinase 1-like, transcript variant X2
ethanolamine kinase 1-like, transcript variant X1
ethanolamine kinase 1-like, transcript variant X3
ethanolamine kinase 1-like, transcript variant X5
nicotinamide riboside kinase 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 69 samples with support for all annotated introns
nicotinamide riboside kinase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 52 samples with support for all annotated introns
nicotinamide riboside kinase 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
uncharacterized PPE family protein PPE16-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
uncharacterized LOC123763567, transcript variant X1
uncharacterized LOC123763567, transcript variant X2
uncharacterized protein LOC123763567 isoform X1
uncharacterized protein LOC123763567 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
ER degradation-enhancing alpha-mannosidase-like protein 1
cysteine and histidine-rich domain-containing protein 1-like
gamma-crystallin D-like, transcript variant X1
gamma-crystallin D-like, transcript variant X2
SPRY domain-containing SOCS box protein 3-like
eukaryotic translation initiation factor 3 subunit H-like
putative uncharacterized protein YHR219W
similar to RNA sequence (same species):INSD:GARH01011109.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 148 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 84 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 148 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
receptor-type tyrosine-protein phosphatase beta-like
similar to RNA sequence (same species):INSD:GBEV01023509.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 842 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 457 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
probable E3 ubiquitin-protein ligase DTX2, transcript variant X2
probable E3 ubiquitin-protein ligase DTX2, transcript variant X1
probable E3 ubiquitin-protein ligase DTX2 isoform X2
probable E3 ubiquitin-protein ligase DTX2 isoform X1
RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like, transcript variant X1
RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like, transcript variant X2
RNA polymerase II subunit A C-terminal domain phosphatase SSU72-like
vacuolar protein sorting-associated protein 52 homolog
putative aminopeptidase W07G4.4, transcript variant X1
putative aminopeptidase W07G4.4 isoform X1
putative aminopeptidase W07G4.4, transcript variant X2
putative aminopeptidase W07G4.4 isoform X2
pyridoxal phosphate homeostasis protein-like, transcript variant X3
pyridoxal phosphate homeostasis protein-like, transcript variant X4
pyridoxal phosphate homeostasis protein-like, transcript variant X1
pyridoxal phosphate homeostasis protein-like, transcript variant X2
pyridoxal phosphate homeostasis protein-like isoform X1
pyridoxal phosphate homeostasis protein-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
uncharacterized LOC123763584, transcript variant X4
uncharacterized LOC123763584, transcript variant X1
uncharacterized LOC123763584, transcript variant X2
uncharacterized LOC123763584, transcript variant X3
uncharacterized LOC123763584, transcript variant X7
uncharacterized LOC123763584, transcript variant X8
uncharacterized LOC123763584, transcript variant X6
uncharacterized LOC123763584, transcript variant X5
uncharacterized LOC123763584, transcript variant X11
uncharacterized LOC123763584, transcript variant X9
uncharacterized LOC123763584, transcript variant X10
uncharacterized LOC123763584, transcript variant X14
uncharacterized LOC123763584, transcript variant X13
uncharacterized LOC123763584, transcript variant X15
uncharacterized LOC123763584, transcript variant X12
uncharacterized protein LOC123763584 isoform X2
uncharacterized protein LOC123763584 isoform X1
uncharacterized protein LOC123763584 isoform X4
uncharacterized protein LOC123763584 isoform X3
uncharacterized protein LOC123763584 isoform X6
uncharacterized protein LOC123763584 isoform X5
FAST kinase domain-containing protein 1, mitochondrial-like
heat shock cognate 71 kDa protein-like, transcript variant X1
heat shock cognate 71 kDa protein-like isoform X1
heat shock cognate 71 kDa protein-like, transcript variant X2
heat shock cognate 71 kDa protein-like isoform X2
uncharacterized LOC123763587, transcript variant X2
uncharacterized LOC123763587, transcript variant X3
uncharacterized LOC123763587, transcript variant X1
synaptophysin-like, transcript variant X2
synaptophysin-like, transcript variant X1
synaptophysin-like, transcript variant X3
synaptophysin-like, transcript variant X4
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X6
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X4
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X9
tyrosine-protein phosphatase non-receptor type 9-like isoform X4
tyrosine-protein phosphatase non-receptor type 9-like isoform X6
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X1
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X2
tyrosine-protein phosphatase non-receptor type 9-like isoform X1
tyrosine-protein phosphatase non-receptor type 9-like isoform X2
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X8
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X13
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X12
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X14
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X10
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X11
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X15
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X16
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X3
tyrosine-protein phosphatase non-receptor type 9-like isoform X3
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X5
tyrosine-protein phosphatase non-receptor type 9-like isoform X5
tyrosine-protein phosphatase non-receptor type 9-like, transcript variant X7
tyrosine-protein phosphatase non-receptor type 9-like isoform X7
tyrosine-protein phosphatase non-receptor type 9-like isoform X8
cytochrome c oxidase assembly protein COX20, mitochondrial-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
cytochrome c oxidase assembly protein COX20, mitochondrial-like isoform X2
cytochrome c oxidase assembly protein COX20, mitochondrial-like, transcript variant X1
cytochrome c oxidase assembly protein COX20, mitochondrial-like isoform X1
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X1
transient receptor potential cation channel subfamily A member 1 homolog, transcript variant X2
transient receptor potential cation channel subfamily A member 1 homolog
probable caffeoyl-CoA O-methyltransferase 2
serine-rich adhesin for platelets-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
serine-rich adhesin for platelets-like, transcript variant X1
serine-rich adhesin for platelets-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized protein LOC123763595 isoform X1
serine-rich adhesin for platelets-like isoform X3
serine-rich adhesin for platelets-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
serine-rich adhesin for platelets-like isoform X2
adenosine receptor A1-like, transcript variant X2
adenosine receptor A1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized protein LOC123763599 isoform X1
ADP-ribosylation factor GTPase-activating protein 2-like, transcript variant X3
ADP-ribosylation factor GTPase-activating protein 2-like, transcript variant X1
ADP-ribosylation factor GTPase-activating protein 2-like, transcript variant X2
ADP-ribosylation factor GTPase-activating protein 2-like isoform X3
ADP-ribosylation factor GTPase-activating protein 2-like isoform X1
ADP-ribosylation factor GTPase-activating protein 2-like isoform X2
similar to RNA sequence (same species):INSD:GBEV01027404.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; added 1514 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; added 1514 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC123763606
transmembrane protein 126A-like, transcript variant X2
transmembrane protein 126A-like, transcript variant X3
transmembrane protein 126A-like, transcript variant X1
uncharacterized protein LOC123763607 isoform X2
uncharacterized protein LOC123763607 isoform X1
transmembrane protein 126A-like isoform X3
solute carrier family 22 member 3-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
solute carrier family 22 member 3-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
solute carrier family 22 member 3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
solute carrier family 22 member 3-like isoform X1
solute carrier family 22 member 3-like isoform X3
solute carrier family 22 member 3-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
solute carrier family 22 member 3-like isoform X2
uncharacterized LOC123763613, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
uncharacterized LOC123763613, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized LOC123763613, transcript variant X3
uncharacterized LOC123763613, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123763613, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 37% coverage of the annotated genomic feature by RNAseq alignments
4-coumarate--CoA ligase-like 7, transcript variant X3
4-coumarate--CoA ligase-like 7, transcript variant X1
4-coumarate--CoA ligase-like 7, transcript variant X2
adult-specific cuticular protein ACP-20-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 94 samples with support for all annotated introns
uncharacterized LOC123763617, transcript variant X3
uncharacterized LOC123763617, transcript variant X1
uncharacterized LOC123763617, transcript variant X4
uncharacterized LOC123763617, transcript variant X2
carboxypeptidase D-like, transcript variant X1
carboxypeptidase D-like, transcript variant X3
carboxypeptidase D-like, transcript variant X2
solute carrier family 22 member 20-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
solute carrier family 22 member 20-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
solute carrier family 22 member 20-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
solute carrier family 22 member 20-like isoform X2
solute carrier family 22 member 20-like isoform X1
solute carrier family 22 member 20-like isoform X3
post-GPI attachment to proteins factor 6-like, transcript variant X1
post-GPI attachment to proteins factor 6-like, transcript variant X5
post-GPI attachment to proteins factor 6-like, transcript variant X4
post-GPI attachment to proteins factor 6-like, transcript variant X3
post-GPI attachment to proteins factor 6-like, transcript variant X2
post-GPI attachment to proteins factor 6-like isoform X1
post-GPI attachment to proteins factor 6-like isoform X2
WD repeat-containing protein 54-like, transcript variant X1
WD repeat-containing protein 54-like, transcript variant X2
WD repeat-containing protein 54-like, transcript variant X3
uncharacterized LOC123763626, transcript variant X2
uncharacterized LOC123763626, transcript variant X1
uncharacterized LOC123763624, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized LOC123763624, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
DNA-directed RNA polymerase II subunit RPB1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
uncharacterized LOC123763628, transcript variant X2
uncharacterized LOC123763628, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
uncharacterized LOC123763629, transcript variant X2
uncharacterized LOC123763629, transcript variant X1
uncharacterized protein LOC123763629 isoform X2
uncharacterized protein LOC123763629 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
transcription factor IIIA-like, transcript variant X1
transcription factor IIIA-like, transcript variant X2
zinc finger protein 28-like, transcript variant X5
zinc finger protein 28-like, transcript variant X3
zinc finger protein 28-like, transcript variant X4
zinc finger protein 28-like, transcript variant X1
zinc finger protein 28-like, transcript variant X2
zinc finger protein 28-like, transcript variant X6
putative zinc finger protein 66, transcript variant X3
putative zinc finger protein 66, transcript variant X2
putative zinc finger protein 66, transcript variant X1
insulin receptor substrate 1-like, transcript variant X1
insulin receptor substrate 1-like, transcript variant X2
insulin receptor substrate 1-like, transcript variant X3
insulin receptor substrate 1-like, transcript variant X4
insulin receptor substrate 1-like isoform X1
uncharacterized protein LOC123763636 isoform X4
uncharacterized protein LOC123763636 isoform X2
insulin receptor substrate 1-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
activating signal cointegrator 1 complex subunit 1-like
ETS translocation variant 5-like, transcript variant X1
ETS translocation variant 5-like, transcript variant X2
ets DNA-binding protein pokkuri-like isoform X1
ETS translocation variant 5-like isoform X2
isochorismatase domain-containing protein 2-like
peroxisome assembly protein 12-like, transcript variant X2
peroxisome assembly protein 12-like, transcript variant X1
peroxisome assembly protein 12-like isoform X2
peroxisome assembly protein 12-like isoform X1
replication protein A 70 kDa DNA-binding subunit-like, transcript variant X1
replication protein A 70 kDa DNA-binding subunit-like, transcript variant X2
replication protein A 70 kDa DNA-binding subunit-like isoform X1
replication protein A 70 kDa DNA-binding subunit-like isoform X2
replication protein A 70 kDa DNA-binding subunit-like, transcript variant X3
replication protein A 70 kDa DNA-binding subunit-like isoform X3
eukaryotic translation initiation factor 4E type 3-like
sushi, von Willebrand factor type A, EGF and pentraxin domain-containing protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
PMS1 protein homolog 1-like, transcript variant X1
PMS1 protein homolog 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123763653, transcript variant X3
uncharacterized LOC123763653, transcript variant X1
uncharacterized LOC123763653, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 57% coverage of the annotated genomic feature by RNAseq alignments
WD repeat-containing protein 89-like, transcript variant X2
WD repeat-containing protein 89-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
keratin-associated protein 5-7-like, transcript variant X2
keratin-associated protein 5-7-like, transcript variant X1
GAS2-like protein pickled eggs, transcript variant X2
GAS2-like protein pickled eggs isoform X2
GAS2-like protein pickled eggs, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
uncharacterized protein LOC123763661 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
uncharacterized LOC123763664, transcript variant X4
uncharacterized LOC123763664, transcript variant X3
uncharacterized LOC123763664, transcript variant X5
uncharacterized LOC123763664, transcript variant X2
uncharacterized LOC123763664, transcript variant X1
uncharacterized LOC123763664, transcript variant X6
uncharacterized protein LOC123763664 isoform X2
uncharacterized protein LOC123763664 isoform X4
uncharacterized protein LOC123763664 isoform X1
uncharacterized protein LOC123763664 isoform X3
uncharacterized LOC123763666, transcript variant X2
uncharacterized LOC123763666, transcript variant X4
uncharacterized LOC123763666, transcript variant X1
uncharacterized LOC123763666, transcript variant X6
uncharacterized LOC123763666, transcript variant X7
uncharacterized LOC123763666, transcript variant X3
uncharacterized LOC123763666, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins, and 39% coverage of the annotated genomic feature by RNAseq alignments
cold and drought-regulated protein CORA-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
glycine-rich cell wall structural protein 1.8-like
uncharacterized protein DDB_G0290685-like
protein RNA-directed DNA methylation 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like
flocculation protein FLO11-like isoform X1
sphingomyelin phosphodiesterase-like, transcript variant X2
sphingomyelin phosphodiesterase-like, transcript variant X1
sphingomyelin phosphodiesterase-like isoform X2
sphingomyelin phosphodiesterase-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 89% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123763809, transcript variant X2
uncharacterized LOC123763809, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
solute carrier family 22 member 6-A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA proline (anticodon AGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA proline (anticodon CGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
NFX1-type zinc finger-containing protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
NFX1-type zinc finger-containing protein 1-like, transcript variant X2
NFX1-type zinc finger-containing protein 1-like, transcript variant X3
NFX1-type zinc finger-containing protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
ADP-ribosylation factor-like protein 6-interacting protein 4
calcium/calmodulin-dependent protein kinase type 1-like
transcription elongation factor SPT6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 34% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 6% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; substituted 3 bases at 3 genomic stop codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: transcription elongation factor SPT6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 49% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 44% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123763686, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
uncharacterized LOC123763686, transcript variant X2
uncharacterized LOC123763687, transcript variant X2
uncharacterized LOC123763687, transcript variant X1
uncharacterized LOC123763688, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC123763688, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 26% coverage of the annotated genomic feature by RNAseq alignments
platelet glycoprotein Ib alpha chain-like
uncharacterized LOC123763689, transcript variant X3
uncharacterized LOC123763689, transcript variant X1
uncharacterized LOC123763689, transcript variant X4
uncharacterized LOC123763689, transcript variant X2
uncharacterized LOC123763689, transcript variant X5
paternally-expressed gene 3 protein-like
uncharacterized LOC123763816, transcript variant X1
uncharacterized LOC123763816, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 14% coverage of the annotated genomic feature by RNAseq alignments
probable serine/threonine-protein kinase samkC
putative mediator of RNA polymerase II transcription subunit 26
putative uncharacterized protein DDB_G0271606
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
organic solute transporter alpha-like protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
organic solute transporter subunit alpha-like
probable serine/threonine-protein kinase kinX
uncharacterized transmembrane protein DDB_G0289901-like
importin subunit alpha-1-like, transcript variant X1
importin subunit alpha-1-like, transcript variant X2
importin subunit alpha-1-like isoform X1
importin subunit alpha-3-like isoform X2
glucose dehydrogenase [FAD, quinone]-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins, and 67% coverage of the annotated genomic feature by RNAseq alignments
ATP-binding cassette sub-family F member 1-like
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like, transcript variant X1
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like, transcript variant X2
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like isoform X1
dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit STT3B-like isoform X2
structural maintenance of chromosomes protein 6-like
cleavage and polyadenylation specificity factor subunit 3-like
dipeptidyl peptidase 3-like, transcript variant X2
dipeptidyl peptidase 3-like, transcript variant X3
dipeptidyl peptidase 3-like, transcript variant X1
dipeptidyl peptidase 3-like, transcript variant X4
uncharacterized LOC123763707, transcript variant X3
uncharacterized LOC123763707, transcript variant X1
uncharacterized LOC123763707, transcript variant X2
uncharacterized protein LOC123763707 isoform X2
uncharacterized protein LOC123763707 isoform X1
leucine-rich repeats and immunoglobulin-like domains protein 3
mannose-1-phosphate guanyltransferase alpha-A-like
aldehyde dehydrogenase, mitochondrial-like
inositol polyphosphate 1-phosphatase-like, transcript variant X2
inositol polyphosphate 1-phosphatase-like, transcript variant X3
inositol polyphosphate 1-phosphatase-like, transcript variant X1
inositol polyphosphate 1-phosphatase-like
kinesin-like protein KIF20B, transcript variant X1
kinesin-like protein KIF20B, transcript variant X3
kinesin-like protein KIF20B, transcript variant X2
regulator of microtubule dynamics protein 1-like, transcript variant X3
regulator of microtubule dynamics protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
regulator of microtubule dynamics protein 1-like, transcript variant X1
regulator of microtubule dynamics protein 1-like, transcript variant X4
regulator of microtubule dynamics protein 1-like, transcript variant X5
regulator of microtubule dynamics protein 1-like
muscleblind-like protein 1, transcript variant X11
muscleblind-like protein 1, transcript variant X15
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
muscleblind-like protein 1, transcript variant X14
muscleblind-like protein 1, transcript variant X8
muscleblind-like protein 1, transcript variant X5
muscleblind-like protein 1, transcript variant X7
muscleblind-like protein 1, transcript variant X12
muscleblind-like protein 1, transcript variant X9
muscleblind-like protein 1, transcript variant X6
muscleblind-like protein 1, transcript variant X1
muscleblind-like protein 1, transcript variant X2
muscleblind-like protein 1, transcript variant X3
muscleblind-like protein 1, transcript variant X10
muscleblind-like protein 1, transcript variant X4
muscleblind-like protein 1, transcript variant X13
uncharacterized serine-rich protein C215.13-like isoform X6
nuclear pore complex protein Nup153-like isoform X3
uncharacterized protein LOC123763716 isoform X7