Procambarus clarkii strain Jiangsu linkage group LG28, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035500.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
putative uncharacterized protein DDB_G0290521
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
voltage-dependent calcium channel subunit alpha-2/delta-1-like, transcript variant X4
COORDINATES: polyA evidence [ECO:0006239]
voltage-dependent calcium channel subunit alpha-2/delta-1-like, transcript variant X3
voltage-dependent calcium channel subunit alpha-2/delta-1-like, transcript variant X2
voltage-dependent calcium channel subunit alpha-2/delta-1-like, transcript variant X1
voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X4
voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X3
voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X2
voltage-dependent calcium channel subunit alpha-2/delta-1-like isoform X1
collagen alpha-1(I) chain-like, transcript variant X2
collagen alpha-1(I) chain-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
collagen alpha-1(I) chain-like, transcript variant X4
collagen alpha-1(I) chain-like, transcript variant X1
collagen alpha-1(I) chain-like, transcript variant X3
collagen alpha-1(I) chain-like isoform X1
collagen alpha-1(I) chain-like isoform X3
collagen alpha-1(III) chain-like isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
BTB/POZ domain-containing protein kctd15-like
probable RNA polymerase II nuclear localization protein SLC7A6OS, transcript variant X1
probable RNA polymerase II nuclear localization protein SLC7A6OS, transcript variant X2
probable RNA polymerase II nuclear localization protein SLC7A6OS
DNA-directed RNA polymerase II subunit RPB11-like
eukaryotic translation initiation factor 3 subunit K-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
serine-rich adhesin for platelets-like, transcript variant X4
serine-rich adhesin for platelets-like, transcript variant X2
serine-rich adhesin for platelets-like, transcript variant X1
serine-rich adhesin for platelets-like isoform X1
serine-rich adhesin for platelets-like isoform X2
uncharacterized protein LOC123760856 isoform X4
serine-rich adhesin for platelets-like, transcript variant X3
serine-rich adhesin for platelets-like isoform X3
receptor-type tyrosine-protein phosphatase R-like, transcript variant X1
receptor-type tyrosine-protein phosphatase R-like, transcript variant X2
receptor-type tyrosine-protein phosphatase R-like isoform X1
uncharacterized protein LOC123760857 isoform X2
phenoloxidase-activating factor 3-like, transcript variant X2
phenoloxidase-activating factor 3-like, transcript variant X1
phenoloxidase-activating factor 3-like isoform X1
phenoloxidase-activating factor 3-like isoform X2
cold shock domain-containing protein E1-like, transcript variant X3
cold shock domain-containing protein E1-like, transcript variant X2
cold shock domain-containing protein E1-like, transcript variant X1
cold shock domain-containing protein E1-like
ras-like GTP-binding protein Rho1, transcript variant X1
ras-like GTP-binding protein Rho1, transcript variant X3
ras-like GTP-binding protein Rho1, transcript variant X7
ras-like GTP-binding protein Rho1, transcript variant X6
ras-like GTP-binding protein Rho1, transcript variant X4
ras-like GTP-binding protein Rho1, transcript variant X2
ras-like GTP-binding protein Rho1, transcript variant X5
ras-like GTP-binding protein Rho1, transcript variant X9
ras-like GTP-binding protein Rho1, transcript variant X8
ras-like GTP-binding protein Rho1 isoform X3
ras-like GTP-binding protein Rho1 isoform X1
ras-like GTP-binding protein Rho1 isoform X4
ras-like GTP-binding protein Rho1 isoform X2
ras-like GTP-binding protein Rho1 isoform X5
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
protein RNA-directed DNA methylation 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
F-actin-capping protein subunit alpha-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 77% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123760866, transcript variant X2
uncharacterized LOC123760866, transcript variant X1
uncharacterized protein LOC123760866 isoform X2
uncharacterized protein LOC123760866 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
COORDINATES: nucleotide motif:Rfam:12.0:RF00020
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 96% coverage of the annotated genomic feature by RNAseq alignments
piggyBac transposable element-derived protein 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
probable glutamate receptor, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
probable glutamate receptor, transcript variant X1
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
glutenin, high molecular weight subunit 12-like
zinc finger and BTB domain-containing protein 14-like, transcript variant X2
zinc finger and BTB domain-containing protein 14-like, transcript variant X1
zinc finger and BTB domain-containing protein 14-like isoform X2
zinc finger and BTB domain-containing protein 14-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
inter-alpha-trypsin inhibitor heavy chain H3-like, transcript variant X2
inter-alpha-trypsin inhibitor heavy chain H3-like, transcript variant X1
inter-alpha-trypsin inhibitor heavy chain H3-like isoform X2
inter-alpha-trypsin inhibitor heavy chain H3-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
carbohydrate sulfotransferase 4-like, transcript variant X3
carbohydrate sulfotransferase 4-like isoform X3
carbohydrate sulfotransferase 4-like, transcript variant X1
carbohydrate sulfotransferase 4-like, transcript variant X2
carbohydrate sulfotransferase 4-like isoform X1
carbohydrate sulfotransferase 4-like isoform X2
uncharacterized LOC123760885, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123760885, transcript variant X2
uncharacterized LOC123760885, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 92% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
putative phosphopantothenoylcysteine decarboxylase, transcript variant X1
putative phosphopantothenoylcysteine decarboxylase, transcript variant X2
putative phosphopantothenoylcysteine decarboxylase
pre-mRNA-processing factor 40 homolog B-like, transcript variant X1
pre-mRNA-processing factor 40 homolog B-like, transcript variant X2
pre-mRNA-processing factor 40 homolog B-like, transcript variant X3
pre-mRNA-processing factor 40 homolog B-like, transcript variant X5
pre-mRNA-processing factor 40 homolog B-like, transcript variant X4
pre-mRNA-processing factor 40 homolog B-like isoform X1
pre-mRNA-processing factor 40 homolog B-like isoform X2
pre-mRNA-processing factor 40 homolog B-like isoform X3
pre-mRNA-processing factor 40 homolog B-like isoform X5
pre-mRNA-processing factor 40 homolog B-like isoform X4
proline-rich protein HaeIII subfamily 1-like
uncharacterized PPE family protein PPE12-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 68% coverage of the annotated genomic feature by RNAseq alignments
microsomal triglyceride transfer protein large subunit-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 82% coverage of the annotated genomic feature by RNAseq alignments
baculoviral IAP repeat-containing protein 7-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 78% coverage of the annotated genomic feature by RNAseq alignments
MATH and LRR domain-containing protein PFE0570w-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
serine/threonine-protein kinase CBK1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA arginine (anticodon CCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
CUGBP Elav-like family member 4, transcript variant X3
CUGBP Elav-like family member 4, transcript variant X2
CUGBP Elav-like family member 4, transcript variant X4
CUGBP Elav-like family member 4, transcript variant X9
CUGBP Elav-like family member 4, transcript variant X7
CUGBP Elav-like family member 4, transcript variant X8
CUGBP Elav-like family member 4, transcript variant X5
CUGBP Elav-like family member 4, transcript variant X6
CUGBP Elav-like family member 4, transcript variant X1
CUGBP Elav-like family member 4, transcript variant X10
CUGBP Elav-like family member 4 isoform X3
CUGBP Elav-like family member 4 isoform X2
CUGBP Elav-like family member 4 isoform X8
CUGBP Elav-like family member 4 isoform X9
CUGBP Elav-like family member 4 isoform X6
CUGBP Elav-like family member 4 isoform X7
CUGBP Elav-like family member 4 isoform X4
CUGBP Elav-like family member 4 isoform X5
CUGBP Elav-like family member 4 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
dipeptidase 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
dipeptidase 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
dipeptidase 1-like, transcript variant X1
transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
26S proteasome non-ATPase regulatory subunit 14, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 110 samples with support for all annotated introns
26S proteasome non-ATPase regulatory subunit 14, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 26 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 83 samples with support for all annotated introns
26S proteasome non-ATPase regulatory subunit 14
uncharacterized LOC123760900, transcript variant X3
uncharacterized LOC123760900, transcript variant X2
uncharacterized LOC123760900, transcript variant X1
ankyrin repeat domain-containing protein 13C-like, transcript variant X1
ankyrin repeat domain-containing protein 13C-like, transcript variant X2
ankyrin repeat domain-containing protein 13C-like isoform X1
ankyrin repeat domain-containing protein 13C-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
cell surface glycoprotein 1-like, transcript variant X3
cell surface glycoprotein 1-like, transcript variant X2
cell surface glycoprotein 1-like, transcript variant X1
cell surface glycoprotein 1-like isoform X3
cell surface glycoprotein 1-like isoform X2
cell surface glycoprotein 1-like isoform X1
serine-aspartate repeat-containing protein F-like
clumping factor A-like, transcript variant X2
clumping factor A-like, transcript variant X1
zinc finger Ran-binding domain-containing protein 2-like
uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like
submandibular gland secretory Glx-rich protein CB-like