Procambarus clarkii strain Jiangsu linkage group LG22, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035494.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
COORDINATES: polyA evidence [ECO:0006239]
myb-like protein D, transcript variant X2
myb-like protein D, transcript variant X1
uncharacterized protein MAL13P1.304-like isoform X2
39S ribosomal protein L12, mitochondrial-like
p53 and DNA damage-regulated protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
G patch domain and ankyrin repeat-containing protein 1 homolog, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
G patch domain and ankyrin repeat-containing protein 1 homolog, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
G patch domain and ankyrin repeat-containing protein 1 homolog isoform X1
G patch domain and ankyrin repeat-containing protein 1 homolog isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
phenylacetaldehyde reductase-like, transcript variant X2
phenylacetaldehyde reductase-like, transcript variant X1
phenylacetaldehyde reductase-like, transcript variant X3
cinnamoyl-CoA reductase 1-like isoform X2
phenylacetaldehyde reductase-like isoform X1
phenylacetaldehyde reductase-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
spliceosome RNA helicase DDX39B, transcript variant X2
spliceosome RNA helicase DDX39B, transcript variant X1
protein AAR2 homolog, transcript variant X2
protein AAR2 homolog, transcript variant X3
protein AAR2 homolog, transcript variant X1
protein AAR2 homolog, transcript variant X4
microtubule-associated protein futsch-like
GDP-fucose transporter 1-like, transcript variant X2
GDP-fucose transporter 1-like, transcript variant X1
GDP-fucose transporter 1-like, transcript variant X3
GDP-fucose transporter 1-like isoform X1
GDP-fucose transporter 1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 65% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like, transcript variant X1
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like, transcript variant X4
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like, transcript variant X3
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like, transcript variant X2
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like, transcript variant X5
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like isoform X4
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like isoform X3
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like isoform X2
cGMP-inhibited 3',5'-cyclic phosphodiesterase A-like isoform X1
cGMP-inhibited 3',5'-cyclic phosphodiesterase B-like isoform X5
uncharacterized LOC123759031, transcript variant X2
uncharacterized LOC123759031, transcript variant X1
phospholipid phosphatase 1-like, transcript variant X3
phospholipid phosphatase 1-like, transcript variant X2
phospholipid phosphatase 1-like, transcript variant X1
phospholipid phosphatase 1-like isoform X2
phospholipid phosphatase 2-like isoform X1
serine/arginine repetitive matrix protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
trithorax group protein osa-like, transcript variant X5
trithorax group protein osa-like, transcript variant X4
trithorax group protein osa-like, transcript variant X3
trithorax group protein osa-like, transcript variant X2
trithorax group protein osa-like, transcript variant X1
trithorax group protein osa-like isoform X5
trithorax group protein osa-like isoform X4
trithorax group protein osa-like isoform X3
trithorax group protein osa-like isoform X2
trithorax group protein osa-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
uncharacterized LOC123759035, transcript variant X2
uncharacterized LOC123759035, transcript variant X1
mitochondrial import receptor subunit TOM22 homolog
protein limb expression 1 homolog, transcript variant X2
protein limb expression 1 homolog, transcript variant X1
protein limb expression 1 homolog isoform X2
protein limb expression 1 homolog isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC123759038, transcript variant X3
uncharacterized LOC123759038, transcript variant X5
uncharacterized LOC123759038, transcript variant X2
uncharacterized LOC123759038, transcript variant X4
uncharacterized LOC123759038, transcript variant X1
uncharacterized protein LOC123759038 isoform X3
uncharacterized protein LOC123759038 isoform X5
uncharacterized protein LOC123759038 isoform X2
uncharacterized protein LOC123759038 isoform X4
uncharacterized protein LOC123759038 isoform X1
mitochondrial glycine transporter-like, transcript variant X2
mitochondrial glycine transporter-like isoform X2
mitochondrial glycine transporter-like, transcript variant X1
mitochondrial glycine transporter A-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
failed axon connections homolog, transcript variant X2
failed axon connections homolog, transcript variant X1
failed axon connections homolog, transcript variant X3
failed axon connections homolog, transcript variant X4
repetitive proline-rich cell wall protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 99% coverage of the annotated genomic feature by RNAseq alignments
coiled-coil domain-containing protein 15-like
basic salivary proline-rich protein 1-like
uncharacterized LOC123759043, transcript variant X3
uncharacterized LOC123759043, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123759043, transcript variant X1
uncharacterized LOC123759043, transcript variant X2
uncharacterized LOC123759043, transcript variant X5
uncharacterized protein LOC123759043 isoform X1
uncharacterized protein LOC123759043 isoform X2
uncharacterized protein LOC123759043 isoform X5
uncharacterized protein LOC123759043 isoform X3
uncharacterized protein LOC123759043 isoform X4
U6 snRNA-associated Sm-like protein LSm8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like, transcript variant X1
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like, transcript variant X4
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like, transcript variant X3
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
chondroitin sulfate N-acetylgalactosaminyltransferase 2-like isoform X1
uncharacterized protein LOC123759046 isoform X2
regulator of G-protein signaling loco-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
regulator of G-protein signaling loco-like, transcript variant X3
regulator of G-protein signaling loco-like, transcript variant X1
uncharacterized protein LOC123759047 isoform X1
regulator of G-protein signaling loco-like isoform X2
protein Gawky-like, transcript variant X11
protein Gawky-like, transcript variant X10
protein Gawky-like, transcript variant X7
protein Gawky-like, transcript variant X9
protein Gawky-like, transcript variant X8
protein Gawky-like, transcript variant X4
protein Gawky-like, transcript variant X6
protein Gawky-like, transcript variant X5
protein Gawky-like, transcript variant X3
protein Gawky-like, transcript variant X2
protein Gawky-like, transcript variant X1
protein Gawky-like, transcript variant X13
protein Gawky-like, transcript variant X12
protein Gawky-like, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
H(+)/Cl(-) exchange transporter 7-like, transcript variant X3
H(+)/Cl(-) exchange transporter 7-like, transcript variant X2
H(+)/Cl(-) exchange transporter 7-like, transcript variant X4
H(+)/Cl(-) exchange transporter 7-like, transcript variant X5
H(+)/Cl(-) exchange transporter 7-like, transcript variant X1
H(+)/Cl(-) exchange transporter 7-like isoform X2
H(+)/Cl(-) exchange transporter 7-like isoform X1
E3 ubiquitin-protein ligase RNF123-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
E3 ubiquitin-protein ligase RNF123-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
E3 ubiquitin-protein ligase RNF123-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
E3 ubiquitin-protein ligase RNF123-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
E3 ubiquitin-protein ligase RNF123-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
E3 ubiquitin-protein ligase RNF123-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
carbohydrate sulfotransferase 11-like, transcript variant X2
carbohydrate sulfotransferase 11-like, transcript variant X8
carbohydrate sulfotransferase 11-like, transcript variant X1
carbohydrate sulfotransferase 11-like, transcript variant X6
carbohydrate sulfotransferase 11-like, transcript variant X5
carbohydrate sulfotransferase 11-like, transcript variant X4
carbohydrate sulfotransferase 11-like, transcript variant X7
carbohydrate sulfotransferase 11-like, transcript variant X3
carbohydrate sulfotransferase 11-like isoform X2
carbohydrate sulfotransferase 11-like isoform X1
uncharacterized LOC123759058, transcript variant X4
uncharacterized LOC123759058, transcript variant X8
uncharacterized LOC123759058, transcript variant X3
uncharacterized LOC123759058, transcript variant X5
uncharacterized LOC123759058, transcript variant X7
uncharacterized LOC123759058, transcript variant X2
uncharacterized LOC123759058, transcript variant X1
uncharacterized LOC123759058, transcript variant X6
uncharacterized protein LOC123759058 isoform X1
uncharacterized protein LOC123759058 isoform X2
uncharacterized protein LOC123759058 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
ionotropic receptor 93a-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
ionotropic receptor 93a-like, transcript variant X7
ionotropic receptor 93a-like, transcript variant X6
ionotropic receptor 93a-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
ionotropic receptor 93a-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
ionotropic receptor 93a-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
ionotropic receptor 93a-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
ionotropic receptor 93a-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
uncharacterized protein LOC123759059 isoform X4
uncharacterized protein LOC123759059 isoform X3
uncharacterized protein LOC123759059 isoform X5
uncharacterized protein LOC123759059 isoform X6
prolyl 4-hydroxylase subunit alpha-2-like
50 kDa spicule matrix protein-like, transcript variant X2
50 kDa spicule matrix protein-like, transcript variant X1
50 kDa spicule matrix protein-like isoform X2
50 kDa spicule matrix protein-like isoform X1
kynurenine formamidase-like, transcript variant X1
kynurenine formamidase-like, transcript variant X2
kynurenine formamidase-like, transcript variant X3
kynurenine formamidase-like, transcript variant X4
deoxyhypusine hydroxylase-like, transcript variant X1
deoxyhypusine hydroxylase-like, transcript variant X2
deoxyhypusine hydroxylase-like isoform X1
deoxyhypusine hydroxylase-like isoform X2
uncharacterized PE-PGRS family protein PE_PGRS24-like isoform X4
uncharacterized PE-PGRS family protein PE_PGRS24-like isoform X3
uncharacterized PE-PGRS family protein PE_PGRS54-like isoform X5
RNA polymerase II degradation factor 1-like, transcript variant X2
RNA polymerase II degradation factor 1-like, transcript variant X1
RNA polymerase II degradation factor 1-like isoform X2
uncharacterized LOC123759068, transcript variant X2
uncharacterized LOC123759068, transcript variant X1
uncharacterized LOC123759068, transcript variant X3
uncharacterized LOC123759068, transcript variant X6
uncharacterized LOC123759068, transcript variant X7
uncharacterized LOC123759068, transcript variant X4
uncharacterized LOC123759068, transcript variant X5
uncharacterized protein LOC123759068 isoform X1
uncharacterized protein LOC123759068 isoform X2
uncharacterized protein LOC123759068 isoform X5
uncharacterized protein LOC123759068 isoform X6
uncharacterized protein LOC123759068 isoform X3
uncharacterized protein LOC123759068 isoform X4
uncharacterized LOC123759069, transcript variant X2
uncharacterized LOC123759069, transcript variant X1
uncharacterized LOC123759069, transcript variant X3
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X16
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X18
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X14
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X19
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X23
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 28 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X1
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X12
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X15
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X24
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X20
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X17
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X22
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
C-Jun-amino-terminal kinase-interacting protein 4-like isoform X1
C-Jun-amino-terminal kinase-interacting protein 4-like isoform X2
C-Jun-amino-terminal kinase-interacting protein 4-like, transcript variant X21
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
sodium/calcium exchanger regulatory protein 1-like
protein mono-ADP-ribosyltransferase PARP4-like
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA serine (anticodon CGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
chromosome transmission fidelity protein 18 homolog, transcript variant X2
chromosome transmission fidelity protein 18 homolog, transcript variant X1
chromosome transmission fidelity protein 18 homolog isoform X2
chromosome transmission fidelity protein 18 homolog isoform X1
delta-1-pyrroline-5-carboxylate synthase-like
transfer RNA opal suppressor (anticodon UCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
DDB1- and CUL4-associated factor 12 homolog, transcript variant X6
DDB1- and CUL4-associated factor 12 homolog, transcript variant X1
DDB1- and CUL4-associated factor 12 homolog, transcript variant X7
DDB1- and CUL4-associated factor 12 homolog, transcript variant X8
DDB1- and CUL4-associated factor 12 homolog, transcript variant X2
DDB1- and CUL4-associated factor 12 homolog, transcript variant X4
DDB1- and CUL4-associated factor 12 homolog, transcript variant X5
DDB1- and CUL4-associated factor 12 homolog, transcript variant X3
DDB1- and CUL4-associated factor 12 homolog, transcript variant X9
DDB1- and CUL4-associated factor 12 homolog isoform X1
DDB1- and CUL4-associated factor 12 homolog isoform X2
methenyltetrahydrofolate synthase domain-containing protein-like, transcript variant X6
methenyltetrahydrofolate synthase domain-containing protein-like, transcript variant X1
methenyltetrahydrofolate synthase domain-containing protein-like, transcript variant X2
methenyltetrahydrofolate synthase domain-containing protein-like, transcript variant X4
methenyltetrahydrofolate synthase domain-containing protein-like, transcript variant X5
methenyltetrahydrofolate synthase domain-containing protein-like, transcript variant X3
methenyltetrahydrofolate synthase domain-containing protein-like isoform X2
methenyltetrahydrofolate synthase domain-containing protein-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 86% coverage of the annotated genomic feature by RNAseq alignments
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like, transcript variant X3
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like, transcript variant X1
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like, transcript variant X4
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like, transcript variant X5
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
cardiomyopathy-associated protein 5-like
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like isoform X1
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like isoform X3
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like isoform X4
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like isoform X2
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like, transcript variant X6
1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase-like isoform X5
NEDD8-conjugating enzyme UBE2F-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 71 samples with support for all annotated introns
NEDD8-conjugating enzyme UBE2F-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
lethal(2) giant larvae protein homolog 1-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
lethal(2) giant larvae protein homolog 1-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
lethal(2) giant larvae protein homolog 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
lethal(2) giant larvae protein homolog 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
lethal(2) giant larvae protein homolog 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 47 samples with support for all annotated introns
lethal(2) giant larvae protein homolog 1-like isoform X1
lethal(2) giant larvae protein homolog 1-like isoform X3
lethal(2) giant larvae protein homolog 1-like isoform X2
lethal(2) giant larvae protein homolog 1-like isoform X5
lethal(2) giant larvae protein homolog 1-like, transcript variant X4
lethal(2) giant larvae protein homolog 1-like isoform X4
uncharacterized LOC123759086, transcript variant X4
uncharacterized LOC123759086, transcript variant X3
uncharacterized LOC123759086, transcript variant X2
uncharacterized LOC123759086, transcript variant X1
uncharacterized protein LOC123759086 isoform X4
uncharacterized protein LOC123759086 isoform X2
uncharacterized protein LOC123759086 isoform X3
uncharacterized protein LOC123759086 isoform X1
ubiquitin carboxyl-terminal hydrolase 36-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 63 samples with support for all annotated introns
ubiquitin carboxyl-terminal hydrolase 36-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 75 samples with support for all annotated introns
ubiquitin carboxyl-terminal hydrolase 36-like, transcript variant X3
ubiquitin carboxyl-terminal hydrolase 36-like isoform X1
ubiquitin carboxyl-terminal hydrolase 36-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
uncharacterized LOC123759090, transcript variant X1
uncharacterized LOC123759090, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 55 samples with support for all annotated introns
uncharacterized protein LOC123759090 isoform X1
uncharacterized protein LOC123759090 isoform X2
jmjC domain-containing protein 8-like, transcript variant X2
jmjC domain-containing protein 8-like, transcript variant X1
jmjC domain-containing protein 8-like isoform X2
jmjC domain-containing protein 8-like isoform X1
putative glucosylceramidase 3, transcript variant X1
putative glucosylceramidase 3, transcript variant X2
putative glucosylceramidase 3 isoform X1
putative glucosylceramidase 3 isoform X2
lysosomal acid glucosylceramidase-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
lysosomal acid glucosylceramidase-like, transcript variant X1
lysosomal acid glucosylceramidase-like isoform X1
lysosomal acid glucosylceramidase-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
gamma-aminobutyric acid type B receptor subunit 2-like
similar to RNA sequence (same species):INSD:GBEV01008736.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 217 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 217 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
nucleolar complex protein 4 homolog A-like, transcript variant X2
nucleolar complex protein 4 homolog A-like, transcript variant X3
nucleolar complex protein 4 homolog A-like, transcript variant X1
nucleolar complex protein 4 homolog A-like isoform X2
nucleolar complex protein 4 homolog isoform X3
nucleolar complex protein 4 homolog isoform X1
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6-like, transcript variant X2
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6-like, transcript variant X1
tRNA (cytosine(72)-C(5))-methyltransferase NSUN6-like
uncharacterized LOC123759104, transcript variant X2
uncharacterized LOC123759104, transcript variant X1
putative uncharacterized protein DDB_G0271606
uncharacterized LOC123759106, transcript variant X2
uncharacterized LOC123759106, transcript variant X1
similar to RNA sequence (same species):INSD:GARH01021040.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 321 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 173 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
glycine-rich cell wall structural protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 92% coverage of the annotated genomic feature by RNAseq alignments
bestrophin-4-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
bestrophin-4-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
glutenin, high molecular weight subunit DY10-like
guanine nucleotide-binding protein subunit beta-2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 59% coverage of the annotated genomic feature by RNAseq alignments
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like, transcript variant X4
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X4
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like, transcript variant X3
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like, transcript variant X1
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like, transcript variant X2
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X3
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X1
procollagen-lysine,2-oxoglutarate 5-dioxygenase 1-like isoform X2
similar to RNA sequence (same species):INSD:GBEV01028707.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 89 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 89 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC123759114, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123759114, transcript variant X3
uncharacterized LOC123759114, transcript variant X1
uncharacterized LOC123759114, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
uncharacterized protein LOC123759114 isoform X1
uncharacterized protein LOC123759114 isoform X2
40S ribosomal protein S26-like, transcript variant X2
40S ribosomal protein S26-like, transcript variant X1
40S ribosomal protein S26-like isoform X1
40S ribosomal protein S26-like isoform X2
transfer RNA methionine (anticodon CAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
glutenin, high molecular weight subunit DX5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
tripartite motif-containing protein 59-like, transcript variant X3
tripartite motif-containing protein 59-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 60 samples with support for all annotated introns
tripartite motif-containing protein 59-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
tripartite motif-containing protein 59-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 77% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
tripartite motif-containing protein 5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 88% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123759121, transcript variant X3
uncharacterized LOC123759121, transcript variant X2
uncharacterized LOC123759121, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
transfer RNA tyrosine (anticodon GUA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
adhesion G protein-coupled receptor E5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
adhesion G protein-coupled receptor L4-like
similar to RNA sequence (same species):INSD:GBEV01112468.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1005 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 90% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 972 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 98% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transfer RNA serine (anticodon AGA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 54% coverage of the annotated genomic feature by RNAseq alignments
tripartite motif-containing protein 66-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 444 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
pollen-specific leucine-rich repeat extensin-like protein 1
pentatricopeptide repeat-containing protein At1g10270-like
probable GPI-anchored adhesin-like protein PGA55
paternally-expressed gene 3 protein-like
DNA-directed RNA polymerase II subunit RPB1-like
uncharacterized transmembrane protein DDB_G0289901-like
mediator of DNA damage checkpoint protein 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
uncharacterized protein DKFZp434B061-like
COORDINATES: nucleotide motif:Rfam:12.0:RF00560
extracellular matrix-binding protein EbhB-like