Procambarus clarkii strain Jiangsu linkage group LG11, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035483.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
POU domain, class 6, transcription factor 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
POU domain, class 6, transcription factor 2-like, transcript variant X2
POU domain, class 6, transcription factor 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
POU domain, class 6, transcription factor 2-like isoform X3
POU domain, class 6, transcription factor 2-like isoform X2
POU domain, class 6, transcription factor 2-like isoform X1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA alanine (anticodon CGC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
cleavage stimulation factor subunit 2 tau variant-like
serine/threonine-protein kinase fray2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
cyclin-dependent kinase inhibitor 1C-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
COORDINATES: polyA evidence [ECO:0006239]
similar to RNA sequence (same species):INSD:GARH01038276.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 442 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 356 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
5-hydroxyisourate hydrolase-like, transcript variant X1
5-hydroxyisourate hydrolase-like, transcript variant X2
5-hydroxyisourate hydrolase-like isoform X1
5-hydroxyisourate hydrolase-like isoform X2
receptor-type tyrosine-protein phosphatase zeta-like isoform X3
uncharacterized protein LOC123754903 isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
SWI/SNF chromatin-remodeling complex subunit SNF5-like
transfer RNA aspartic acid (anticodon GUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
pentatricopeptide repeat-containing protein At1g10270-like
leucine-rich repeat and coiled-coil domain-containing protein PF07_0014-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
basic salivary proline-rich protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
serine/arginine repetitive matrix protein 5-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
probable serine/threonine-protein kinase DDB_G0278535
transient receptor potential cation channel trpm-like, transcript variant X8
transient receptor potential cation channel trpm-like, transcript variant X5
transient receptor potential cation channel trpm-like, transcript variant X6
transient receptor potential cation channel trpm-like, transcript variant X7
transient receptor potential cation channel trpm-like, transcript variant X1
transient receptor potential cation channel trpm-like, transcript variant X2
transient receptor potential cation channel trpm-like, transcript variant X4
transient receptor potential cation channel trpm-like, transcript variant X3
transient receptor potential cation channel trpm-like isoform X5
transient receptor potential cation channel trpm-like isoform X2
transient receptor potential cation channel trpm-like isoform X3
transient receptor potential cation channel trpm-like isoform X4
transient receptor potential cation channel trpm-like isoform X1
DNA-directed RNA polymerases I and III subunit RPAC1-like, transcript variant X1
DNA-directed RNA polymerases I and III subunit RPAC1-like, transcript variant X2
DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X1
DNA-directed RNA polymerases I and III subunit RPAC1-like isoform X2
acidic leucine-rich nuclear phosphoprotein 32 family member B-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 57% coverage of the annotated genomic feature by RNAseq alignments
coiled-coil domain-containing protein 80-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 46% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 21% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 30% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 63% coverage of the annotated genomic feature by RNAseq alignments
endocuticle structural glycoprotein SgAbd-1-like
cuticle protein AMP1A-like, transcript variant X2
cuticle protein AMP1A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65 Proteins, and 57% coverage of the annotated genomic feature by RNAseq alignments
similar to RNA sequence (same species):INSD:GARH01039880.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1472 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 1228 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
ankyrin repeat and MYND domain-containing protein 2-like
uncharacterized LOC123754951, transcript variant X6
uncharacterized LOC123754951, transcript variant X8
uncharacterized LOC123754951, transcript variant X5
uncharacterized protein LOC123754951 isoform X5
uncharacterized protein LOC123754951 isoform X7
uncharacterized protein LOC123754951 isoform X4
uncharacterized LOC123754951, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 99 samples with support for all annotated introns
uncharacterized LOC123754951, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 85 samples with support for all annotated introns
uncharacterized LOC123754951, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 77 samples with support for all annotated introns
uncharacterized LOC123754951, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 56 samples with support for all annotated introns
uncharacterized LOC123754951, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
uncharacterized protein LOC123754951 isoform X6
uncharacterized protein LOC123754951 isoform X3
uncharacterized protein LOC123754951 isoform X2
uncharacterized protein LOC123754951 isoform X1
ubiquitin domain-containing protein UBFD1-like, transcript variant X1
ubiquitin domain-containing protein UBFD1-like isoform X1
ubiquitin domain-containing protein UBFD1-like, transcript variant X2
ubiquitin domain-containing protein UBFD1-like isoform X2
immediate early response 3-interacting protein 1-like
uncharacterized LOC123754956, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
uncharacterized LOC123754956, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 32 samples with support for all annotated introns
uncharacterized LOC123754956, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
uncharacterized LOC123754956, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized LOC123754956, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
uncharacterized LOC123754956, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
uncharacterized LOC123754956, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
uncharacterized protein LOC123754956 isoform X1
uncharacterized protein LOC123754956 isoform X2
uncharacterized protein LOC123754956 isoform X3
ribosomal RNA small subunit methyltransferase NEP1-like, transcript variant X2
ribosomal RNA small subunit methyltransferase NEP1-like, transcript variant X1
ribosomal RNA small subunit methyltransferase NEP1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Golgi reassembly-stacking protein 2-like
uncharacterized LOC123754962, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized LOC123754962, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123754965, transcript variant X1
uncharacterized LOC123754965, transcript variant X2
uncharacterized protein LOC123754965 isoform X1
uncharacterized protein LOC123754965 isoform X2
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
similar to RNA sequence (same species):INSD:GBEV01027665.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 801 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 801 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
transcriptional regulatory protein AlgP-like
submandibular gland secretory Glx-rich protein CB-like
nitric oxide synthase, salivary gland-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 75 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
uncharacterized LOC123754972, transcript variant X5
uncharacterized LOC123754972, transcript variant X2
uncharacterized LOC123754972, transcript variant X1
uncharacterized LOC123754972, transcript variant X4
uncharacterized LOC123754972, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like isoform X5
glutamate receptor ionotropic, kainate 2-like isoform X8
glutamate receptor ionotropic, kainate 2-like isoform X1
glutamate receptor ionotropic, kainate 2-like isoform X2
glutamate receptor ionotropic, kainate 2-like isoform X3
glutamate receptor ionotropic, kainate 2-like isoform X4
glutamate receptor ionotropic, kainate 2-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
glutamate receptor ionotropic, kainate 2-like isoform X7
glutamate receptor ionotropic, kainate 2-like, transcript variant X6
glutamate receptor ionotropic, kainate 2-like isoform X6
MAM domain-containing glycosylphosphatidylinositol anchor protein 1-like
leucine-rich repeat-containing protein 15-like
putative uncharacterized protein FLJ46204
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 77% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: dynein axonemal heavy chain 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
39S ribosomal protein L19, mitochondrial-like
uncharacterized LOC123754983, transcript variant X2
uncharacterized LOC123754983, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 107 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
sodium/calcium exchanger 1-like, transcript variant X4
sodium/calcium exchanger 1-like, transcript variant X5
sodium/calcium exchanger 1-like isoform X4
sodium/calcium exchanger 1-like isoform X5
sodium/calcium exchanger 1-like, transcript variant X7
sodium/calcium exchanger 1-like, transcript variant X9
sodium/calcium exchanger 1-like isoform X7
sodium/calcium exchanger 1-like isoform X9
sodium/calcium exchanger 1-like, transcript variant X6
sodium/calcium exchanger 1-like, transcript variant X8
sodium/calcium exchanger 1-like isoform X6
sodium/calcium exchanger 1-like isoform X8
sodium/calcium exchanger 1-like, transcript variant X2
sodium/calcium exchanger 1-like, transcript variant X1
sodium/calcium exchanger 1-like, transcript variant X3
sodium/calcium exchanger 1-like isoform X1
sodium/calcium exchanger 1-like isoform X2
sodium/calcium exchanger 1-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 73% coverage of the annotated genomic feature by RNAseq alignments
solute carrier family 35 member F5-like, transcript variant X2
solute carrier family 35 member F5-like, transcript variant X1
solute carrier family 35 member F5-like isoform X2
solute carrier family 35 member F5-like isoform X1
mediator of RNA polymerase II transcription subunit 27-like, transcript variant X1
mediator of RNA polymerase II transcription subunit 27-like, transcript variant X2
mediator of RNA polymerase II transcription subunit 27-like
facilitated trehalose transporter Tret1-like, transcript variant X2
facilitated trehalose transporter Tret1-like isoform X2
facilitated trehalose transporter Tret1-like, transcript variant X1
sugar transporter ERD6-like 4 isoform X1
tetraspanin-1-like, transcript variant X3
tetraspanin-1-like, transcript variant X1
tetraspanin-1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
sphingomyelin phosphodiesterase-like, transcript variant X1
sphingomyelin phosphodiesterase-like, transcript variant X2
sphingomyelin phosphodiesterase-like isoform X1
sphingomyelin phosphodiesterase-like, transcript variant X3
sphingomyelin phosphodiesterase-like isoform X2
methionine synthase-like, transcript variant X2
methionine synthase-like, transcript variant X1
cytosolic iron-sulfur assembly component 2A-like, transcript variant X5
cytosolic iron-sulfur assembly component 2A-like, transcript variant X6
cytosolic iron-sulfur assembly component 2A-like, transcript variant X4
cytosolic iron-sulfur assembly component 2A-like, transcript variant X2
cytosolic iron-sulfur assembly component 2A-like, transcript variant X3
cytosolic iron-sulfur assembly component 2A-like, transcript variant X7
cytosolic iron-sulfur assembly component 2A-like, transcript variant X8
cytosolic iron-sulfur assembly component 2A-like isoform X2
cytosolic iron-sulfur assembly component 2A-like, transcript variant X1
uncharacterized protein LOC123754996 isoform X1
WD repeat-containing protein 81-like, transcript variant X2
WD repeat-containing protein 81-like, transcript variant X1
WD repeat-containing protein 81-like isoform X2
WD repeat-containing protein 81-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 67% coverage of the annotated genomic feature by RNAseq alignments
DNA polymerase kappa-like, transcript variant X2
DNA polymerase kappa-like, transcript variant X1
A disintegrin and metalloproteinase with thrombospondin motifs adt-2-like
uncharacterized LOC123755001, transcript variant X2
uncharacterized LOC123755001, transcript variant X1
transfer RNA arginine (anticodon CCU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: myb-like protein AA
histone-lysine N-methyltransferase 2D-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
protein-lysine N-methyltransferase EEF2KMT-like, transcript variant X1
protein-lysine N-methyltransferase EEF2KMT-like, transcript variant X2
protein-lysine N-methyltransferase EEF2KMT-like, transcript variant X4
protein-lysine N-methyltransferase EEF2KMT-like, transcript variant X3
protein-lysine N-methyltransferase EEF2KMT-like isoform X1
protein-lysine N-methyltransferase EEF2KMT-like isoform X2
protein-lysine N-methyltransferase EEF2KMT-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 92% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123755005, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 mRNA, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123755005, transcript variant X1
uncharacterized LOC123755005, transcript variant X2
uncharacterized protein LOC123755005 isoform X2
uncharacterized protein LOC123755005 isoform X1
uncharacterized protein LOC123755005 isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
ribosome-binding protein 1-like, transcript variant X1
ribosome-binding protein 1-like, transcript variant X3
ribosome-binding protein 1-like, transcript variant X9
ribosome-binding protein 1-like, transcript variant X10
ribosome-binding protein 1-like, transcript variant X7
ribosome-binding protein 1-like, transcript variant X11
ribosome-binding protein 1-like, transcript variant X13
ribosome-binding protein 1-like, transcript variant X12
ribosome-binding protein 1-like, transcript variant X15
ribosome-binding protein 1-like, transcript variant X16
ribosome-binding protein 1-like, transcript variant X5
ribosome-binding protein 1-like, transcript variant X14
ribosome-binding protein 1-like, transcript variant X4
ribosome-binding protein 1-like, transcript variant X6
ribosome-binding protein 1-like, transcript variant X8
ribosome-binding protein 1-like, transcript variant X2
ribosome-binding protein 1-like isoform X2
ribosome-binding protein 1-like isoform X9
ribosome-binding protein 1-like isoform X12
ribosome-binding protein 1-like isoform X15
ribosome-binding protein 1-like isoform X1
ribosome-binding protein 1-like isoform X8
ribosome-binding protein 1-like isoform X6
ribosome-binding protein 1-like isoform X10
ribosome-binding protein 1-like isoform X11
ribosome-binding protein 1-like isoform X14
ribosome-binding protein 1-like isoform X4
ribosome-binding protein 1-like isoform X13
ribosome-binding protein 1-like isoform X3
COP1-interactive protein 1-like isoform X5
ribosome-binding protein 1-like isoform X7
retinol dehydrogenase 11-like, transcript variant X1
retinol dehydrogenase 11-like, transcript variant X3
retinol dehydrogenase 11-like, transcript variant X2
retinol dehydrogenase 11-like, transcript variant X4
retinol dehydrogenase 11-like isoform X2
retinol dehydrogenase 11-like isoform X1
retinol dehydrogenase 11-like isoform X3
phospholipase D A-like, transcript variant X3
phospholipase D A-like, transcript variant X1
phospholipase D A-like, transcript variant X2
RNA polymerase II degradation factor 1-like isoform X1
activating signal cointegrator 1 complex subunit 2 homolog isoform X2
uncharacterized LOC123755015, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
uncharacterized LOC123755015, transcript variant X2
sodium/hydrogen exchanger 7-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 58 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X6
sodium/hydrogen exchanger 7-like, transcript variant X8
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X10
sodium/hydrogen exchanger 7-like, transcript variant X1
sodium/hydrogen exchanger 7-like, transcript variant X13
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X9
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 70 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X12
sodium/hydrogen exchanger 7-like, transcript variant X14
sodium/hydrogen exchanger 7-like, transcript variant X7
sodium/hydrogen exchanger 7-like, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X15
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 81 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X17
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
sodium/hydrogen exchanger 7-like, transcript variant X16
sodium/hydrogen exchanger 7-like, transcript variant X3
sodium/hydrogen exchanger 7-like, transcript variant X5
sodium/hydrogen exchanger 7-like isoform X1
sodium/hydrogen exchanger 7-like isoform X3
sodium/hydrogen exchanger 7-like isoform X5
sodium/hydrogen exchanger 7-like isoform X6
sodium/hydrogen exchanger 7-like isoform X7
sodium/hydrogen exchanger 7-like isoform X2
sodium/hydrogen exchanger 7-like isoform X4
mediator of RNA polymerase II transcription subunit 24-like, transcript variant X2
mediator of RNA polymerase II transcription subunit 24-like, transcript variant X1
mediator of RNA polymerase II transcription subunit 24-like
nuclear receptor-binding factor 2-like, transcript variant X2
nuclear receptor-binding factor 2-like, transcript variant X1
nuclear receptor-binding factor 2-like isoform X2
uncharacterized protein LOC123755023 isoform X1
uncharacterized LOC123755024, transcript variant X1
uncharacterized LOC123755024, transcript variant X2
uncharacterized LOC123755025, transcript variant X2
uncharacterized LOC123755025, transcript variant X3
uncharacterized LOC123755025, transcript variant X1
uncharacterized LOC123755025, transcript variant X15
uncharacterized LOC123755025, transcript variant X5
uncharacterized LOC123755025, transcript variant X4
uncharacterized LOC123755025, transcript variant X9
uncharacterized LOC123755025, transcript variant X8
uncharacterized LOC123755025, transcript variant X6
uncharacterized LOC123755025, transcript variant X7
uncharacterized LOC123755025, transcript variant X13
uncharacterized LOC123755025, transcript variant X11
uncharacterized LOC123755025, transcript variant X12
uncharacterized LOC123755025, transcript variant X14
uncharacterized LOC123755025, transcript variant X10
uncharacterized protein LOC123755025 isoform X2
uncharacterized protein LOC123755025 isoform X3
uncharacterized protein LOC123755025 isoform X1
uncharacterized protein LOC123755025 isoform X5
uncharacterized protein LOC123755025 isoform X4
probable low-specificity L-threonine aldolase 2, transcript variant X6
probable low-specificity L-threonine aldolase 2, transcript variant X4
probable low-specificity L-threonine aldolase 2, transcript variant X5
probable low-specificity L-threonine aldolase 2, transcript variant X1
probable low-specificity L-threonine aldolase 2, transcript variant X3
probable low-specificity L-threonine aldolase 2, transcript variant X2
probable low-specificity L-threonine aldolase 2 isoform X1
probable low-specificity L-threonine aldolase 2 isoform X3
probable low-specificity L-threonine aldolase 2 isoform X2
probable low-specificity L-threonine aldolase 2 isoform X4
alpha-ketoglutarate-dependent dioxygenase alkB homolog 7, mitochondrial-like
trafficking protein particle complex subunit 2-like protein
serine/threonine-protein kinase unc-51-like, transcript variant X1
serine/threonine-protein kinase unc-51-like, transcript variant X2
serine/threonine-protein kinase unc-51-like isoform X1
serine/threonine-protein kinase unc-51-like isoform X2
serine/threonine-protein kinase unc-51-like, transcript variant X3
serine/threonine-protein kinase unc-51-like isoform X3
uncharacterized LOC123755031, transcript variant X4
uncharacterized LOC123755031, transcript variant X3
uncharacterized LOC123755031, transcript variant X2
uncharacterized LOC123755031, transcript variant X1
uncharacterized LOC123755031, transcript variant X5
uncharacterized LOC123755031, transcript variant X6
uncharacterized protein LOC123755031 isoform X1
uncharacterized protein LOC123755031 isoform X2
uncharacterized protein LOC123755031 isoform X3
uncharacterized LOC123755033, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
uncharacterized LOC123755033, transcript variant X2
similar to RNA sequence (same species):INSD:GARH01026366.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 318 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 318 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
putative mediator of RNA polymerase II transcription subunit 29
uncharacterized LOC123755037, transcript variant X2
uncharacterized LOC123755037, transcript variant X1
uncharacterized protein LOC123755037 isoform X1
uncharacterized protein LOC123755037 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
V-type proton ATPase 116 kDa subunit a1-like, transcript variant X1
V-type proton ATPase 116 kDa subunit a1-like, transcript variant X3
V-type proton ATPase 116 kDa subunit a1-like, transcript variant X2
V-type proton ATPase 116 kDa subunit a1-like isoform X1
V-type proton ATPase 116 kDa subunit a1-like isoform X2
guanine nucleotide-binding protein subunit beta-5-like, transcript variant X2
guanine nucleotide-binding protein subunit beta-5-like, transcript variant X3
guanine nucleotide-binding protein subunit beta-5-like, transcript variant X1
guanine nucleotide-binding protein subunit beta-5-like, transcript variant X4
guanine nucleotide-binding protein subunit beta-5-like
EF-hand domain-containing protein D2 homolog, transcript variant X2
EF-hand domain-containing protein D2 homolog, transcript variant X1
EF-hand domain-containing protein D2 homolog, transcript variant X3
EF-hand domain-containing protein D2 homolog, transcript variant X4
EF-hand domain-containing protein D2 homolog isoform X1
EF-hand domain-containing protein D2 homolog isoform X2
obg-like ATPase 1, transcript variant X2
obg-like ATPase 1, transcript variant X3
obg-like ATPase 1, transcript variant X1
uncharacterized PPE family protein PPE12-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
MOB-like protein phocein, transcript variant X1
MOB-like protein phocein, transcript variant X2
neuroplastin-like, transcript variant X1
neuroplastin-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
neuroplastin-like, transcript variant X3
neuroplastin-like, transcript variant X4
uncharacterized LOC123755050, transcript variant X7
uncharacterized LOC123755050, transcript variant X6
uncharacterized LOC123755050, transcript variant X1
uncharacterized LOC123755050, transcript variant X3
uncharacterized LOC123755050, transcript variant X2
uncharacterized LOC123755050, transcript variant X4
uncharacterized LOC123755050, transcript variant X5
coiled-coil domain-containing protein 191-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 95% coverage of the annotated genomic feature by RNAseq alignments
carbohydrate sulfotransferase 10-like, transcript variant X2
carbohydrate sulfotransferase 10-like, transcript variant X1
uncharacterized protein LOC123755051 isoform X2
carbohydrate sulfotransferase 10-like isoform X1
SET and MYND domain-containing protein 4-like
transmembrane protein 39A-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
transmembrane protein 39A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 42 samples with support for all annotated introns
transmembrane protein 39A-like isoform X1
transmembrane protein 39A-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
SET and MYND domain-containing protein 4-like, transcript variant X1
SET and MYND domain-containing protein 4-like, transcript variant X2
SET and MYND domain-containing protein 4-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 52% coverage of the annotated genomic feature by RNAseq alignments
actin cytoskeleton-regulatory complex protein PAN1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 63% coverage of the annotated genomic feature by RNAseq alignments
glutamate receptor ionotropic, delta-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 87% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 58% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 90% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 92 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 60% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 94% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 65% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 88% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
putative ankyrin repeat protein RBE_0220
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 33% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 86% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 34% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123755063, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123755063, transcript variant X3
uncharacterized LOC123755063, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
nitric oxide synthase, salivary gland-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
nitric oxide synthase, salivary gland-like, transcript variant X2
nitric oxide synthase, salivary gland-like isoform X1
nitric oxide synthase, salivary gland-like isoform X2
dynein intermediate chain 2, ciliary-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 54% coverage of the annotated genomic feature by RNAseq alignments
transcription and mRNA export factor ENY2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 108 samples with support for all annotated introns
transcription initiation factor TFIID subunit 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 20% coverage of the annotated genomic feature by RNAseq alignments
ion-translocating oxidoreductase complex subunit C-like
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, transcript variant X6
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, transcript variant X5
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, transcript variant X4
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, transcript variant X1
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, transcript variant X2
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like, transcript variant X3
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X4
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X3
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X2
deoxynucleoside triphosphate triphosphohydrolase SAMHD1-like isoform X1
similar to RNA sequence (same species):INSD:GARH01013498.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 398 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 294 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
beta-1,4-N-acetylgalactosaminyltransferase bre-4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments
transfer RNA phenylalanine (anticodon GAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
putative uncharacterized protein DDB_G0271606
GATA zinc finger domain-containing protein 14-like
uncharacterized threonine-rich GPI-anchored glycoprotein PJ4664.02-like
uncharacterized LOC123755068, transcript variant X1
uncharacterized protein LOC123755068 isoform X1
uncharacterized LOC123755068, transcript variant X2
uncharacterized protein LOC123755068 isoform X2
muscle M-line assembly protein unc-89-like
repetitive proline-rich cell wall protein 2-like
probable serine/threonine-protein kinase kinX
putative uncharacterized protein DDB_G0291608
histidine-rich glycoprotein-like, transcript variant X3
histidine-rich glycoprotein-like, transcript variant X2
uncharacterized protein LOC123755069 isoform X2
histidine-rich glycoprotein-like, transcript variant X1
histidine-rich glycoprotein-like isoform X1
hepatitis A virus cellular receptor 1-like
golgin subfamily A member 6-like protein 2
putative uncharacterized protein DDB_G0282133