Procambarus clarkii strain Jiangsu linkage group LG08, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035480.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
apolipoprotein D-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 64 samples with support for all annotated introns
apolipoprotein D-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
apolipoprotein D-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 65 samples with support for all annotated introns
apolipoprotein D-like, transcript variant X12
apolipoprotein D-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 66 samples with support for all annotated introns
apolipoprotein D-like, transcript variant X2
apolipoprotein D-like, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
apolipoprotein D-like, transcript variant X8
apolipoprotein D-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 34 samples with support for all annotated introns
apolipoprotein D-like, transcript variant X10
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
apolipoprotein D-like, transcript variant X9
apolipoprotein D-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 35 samples with support for all annotated introns
uncharacterized protein LOC123749572 isoform X1
uncharacterized protein LOC123749572 isoform X2
apolipoprotein D-like, transcript variant X13
uncharacterized LOC123749556, transcript variant X1
uncharacterized protein LOC123749556 isoform X1
uncharacterized LOC123749556, transcript variant X2
uncharacterized protein LOC123749556 isoform X2
uncharacterized LOC123749534, transcript variant X3
uncharacterized LOC123749534, transcript variant X2
uncharacterized protein LOC123749534 isoform X3
uncharacterized protein LOC123749534 isoform X2
uncharacterized LOC123749534, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 46 samples with support for all annotated introns
uncharacterized protein LOC123749534 isoform X1
probable RNA-binding protein CG14230, transcript variant X3
probable RNA-binding protein CG14230, transcript variant X2
probable RNA-binding protein CG14230, transcript variant X4
probable RNA-binding protein CG14230, transcript variant X7
probable RNA-binding protein CG14230, transcript variant X5
probable RNA-binding protein CG14230, transcript variant X6
probable RNA-binding protein CG14230, transcript variant X1
U6 snRNA-associated Sm-like protein LSm6, transcript variant X2
U6 snRNA-associated Sm-like protein LSm6, transcript variant X1
U6 snRNA-associated Sm-like protein LSm6 isoform X1
U6 snRNA-associated Sm-like protein LSm6 isoform X2
hexosaminidase D-like, transcript variant X2
hexosaminidase D-like, transcript variant X4
hexosaminidase D-like, transcript variant X3
hexosaminidase D-like, transcript variant X1
CAP-Gly domain-containing linker protein 1-like
BAG family molecular chaperone regulator 1-like, transcript variant X2
BAG family molecular chaperone regulator 1-like, transcript variant X1
BAG family molecular chaperone regulator 1-like
protein PAT1 homolog 1-like, transcript variant X2
protein PAT1 homolog 1-like, transcript variant X3
protein PAT1 homolog 1-like, transcript variant X4
protein PAT1 homolog 1-like, transcript variant X1
facilitated trehalose transporter Tret1-like
uncharacterized LOC123749809, transcript variant X1
uncharacterized LOC123749809, transcript variant X2
uncharacterized protein LOC123749809 isoform X1
uncharacterized protein LOC123749809 isoform X2
transcriptional repressor CTCF-like, transcript variant X5
transcriptional repressor CTCF-like, transcript variant X2
transcriptional repressor CTCF-like isoform X2
transcriptional repressor CTCF-like, transcript variant X4
transcriptional repressor CTCF-like isoform X4
transcriptional repressor CTCF-like, transcript variant X1
transcriptional repressor CTCF-like, transcript variant X3
transcriptional repressor CTCF-like isoform X1
transcriptional repressor CTCF-like isoform X3
transcriptional repressor CTCF-like isoform X5
glucose-6-phosphate exchanger SLC37A2-like, transcript variant X2
glucose-6-phosphate exchanger SLC37A2-like, transcript variant X1
glucose-6-phosphate exchanger SLC37A2-like, transcript variant X3
glucose-6-phosphate exchanger SLC37A2-like isoform X2
glucose-6-phosphate exchanger SLC37A2-like isoform X1
glucose-6-phosphate exchanger SLC37A2-like isoform X3
uncharacterized LOC123749886, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123749886, transcript variant X2
uncharacterized LOC123749886, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
uncharacterized LOC123749886, transcript variant X1
uncharacterized protein LOC123749886 isoform X3
uncharacterized protein LOC123749886 isoform X2
uncharacterized protein LOC123749886 isoform X4
uncharacterized protein LOC123749886 isoform X1
uncharacterized LOC123749886, transcript variant X5
uncharacterized protein LOC123749886 isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
zinc finger matrin-type protein 3-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
zinc finger matrin-type protein 3-like, transcript variant X1
zinc finger matrin-type protein 3-like, transcript variant X2
zinc finger matrin-type protein 3-like isoform X1
zinc finger matrin-type protein 3-like isoform X2
39S ribosomal protein L15, mitochondrial-like
zinc finger protein 260-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
zinc finger protein 260-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 107 samples with support for all annotated introns
uncharacterized LOC123750026, transcript variant X2
uncharacterized LOC123750026, transcript variant X1
C-type lectin domain family 17, member A-like, transcript variant X1
C-type lectin domain family 17, member A-like, transcript variant X2
C-type lectin domain family 17, member A-like
C-type lectin domain family 4 member G-like
C-type lectin domain family 17, member A-like isoform X1
C-type lectin domain family 17, member A-like isoform X2
C-type lectin domain family 17, member A-like, transcript variant X3
uncharacterized LOC123750095, transcript variant X1
uncharacterized LOC123750095, transcript variant X2
uncharacterized protein LOC123750095 isoform X1
uncharacterized protein LOC123750095 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
C-type lectin mannose-binding isoform-like, transcript variant X1
C-type lectin mannose-binding isoform-like, transcript variant X2
C-type lectin mannose-binding isoform-like isoform X1
C-type lectin mannose-binding isoform-like isoform X2
asialoglycoprotein receptor 1-like, transcript variant X1
asialoglycoprotein receptor 1-like, transcript variant X2
asialoglycoprotein receptor 1-like isoform X2
asialoglycoprotein receptor 1-like isoform X1
serine/threonine-protein kinase EDR1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
probable serine/threonine-protein kinase DDB_G0278665
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 66% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
arylalkylamine N-acetyltransferase-like 2
bromodomain-containing protein DDB_G0280777-like
uncharacterized protein DDB_G0287625-like
uncharacterized abhydrolase domain-containing protein DDB_G0269086-like
baculoviral IAP repeat-containing protein 3-like
uncharacterized LOC123750227, transcript variant X2
uncharacterized protein LOC123750227 isoform X2
uncharacterized LOC123750227, transcript variant X1
uncharacterized protein LOC123750227 isoform X1
similar to RNA sequence (same species):INSD:GBEV01252041.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 474 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 385 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
phosphatidylserine synthase-like, transcript variant X2
phosphatidylserine synthase-like, transcript variant X1
phosphatidylserine synthase-like isoform X2
phosphatidylserine synthase-like isoform X1
glycosyltransferase 8 domain-containing protein 1-like
isoleucine--tRNA ligase, mitochondrial-like
putative transferase CAF17 homolog, mitochondrial, transcript variant X3
putative transferase CAF17 homolog, mitochondrial, transcript variant X7
putative transferase CAF17 homolog, mitochondrial, transcript variant X2
putative transferase CAF17 homolog, mitochondrial, transcript variant X4
putative transferase CAF17 homolog, mitochondrial, transcript variant X6
putative transferase CAF17 homolog, mitochondrial, transcript variant X5
putative transferase CAF17 homolog, mitochondrial, transcript variant X1
putative transferase CAF17 homolog, mitochondrial
FERM domain-containing protein 8-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
FERM domain-containing protein 8-like isoform X5
FERM domain-containing protein 8-like, transcript variant X1
FERM domain-containing protein 8-like, transcript variant X4
FERM domain-containing protein 8-like, transcript variant X3
FERM domain-containing protein 8-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
FERM domain-containing protein 8-like, transcript variant X2
FERM domain-containing protein 8-like isoform X1
FERM domain-containing protein 8-like isoform X4
FERM domain-containing protein 8-like isoform X2
FERM domain-containing protein 8-like isoform X3
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
calcineurin subunit B type 2, transcript variant X4
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA cysteine (anticodon GCA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA phenylalanine (anticodon GAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
serine/arginine repetitive matrix protein 1-like
calcineurin subunit B type 2, transcript variant X2
calcineurin subunit B type 2, transcript variant X1
calcineurin subunit B type 2, transcript variant X3
polycomb group RING finger protein 3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 62 samples with support for all annotated introns
polycomb group RING finger protein 3-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
polycomb group RING finger protein 3-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
polycomb group RING finger protein 3-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
polycomb group RING finger protein 3-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
polycomb group RING finger protein 3-like
uncharacterized LOC123750507, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized protein LOC123750507 isoform X2
uncharacterized LOC123750507, transcript variant X1
uncharacterized protein LOC123750507 isoform X1
eukaryotic translation initiation factor 3 subunit C-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 74 samples with support for all annotated introns
ephrin type-A receptor 4-A-like, transcript variant X3
ephrin type-A receptor 4-A-like, transcript variant X7
ephrin type-A receptor 4-A-like, transcript variant X5
ephrin type-A receptor 4-A-like, transcript variant X2
ephrin type-A receptor 4-A-like, transcript variant X6
ephrin type-A receptor 4-A-like, transcript variant X4
ephrin type-A receptor 4-A-like, transcript variant X1
ephrin type-B receptor 1-B-like isoform X3
ephrin type-A receptor 4-A-like isoform X7
ephrin type-A receptor 4-A-like isoform X5
ephrin type-A receptor 5-like isoform X2
ephrin type-A receptor 4-A-like isoform X6
ephrin type-A receptor 4-A-like isoform X4
ephrin type-A receptor 5-like isoform X1
probable ATP-dependent RNA helicase DDX52, transcript variant X2
probable ATP-dependent RNA helicase DDX52, transcript variant X1
probable ATP-dependent RNA helicase DDX52 isoform X1
probable ATP-dependent RNA helicase DDX52 isoform X2
dual specificity tyrosine-phosphorylation-regulated kinase 1A-like, transcript variant X2
dual specificity tyrosine-phosphorylation-regulated kinase 1A-like, transcript variant X1
dual specificity tyrosine-phosphorylation-regulated kinase 1A-like isoform X2
dual specificity tyrosine-phosphorylation-regulated kinase 1A-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
hyphally regulated cell wall protein 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 95% coverage of the annotated genomic feature by RNAseq alignments
E3 ubiquitin-protein ligase RNF185-like, transcript variant X2
E3 ubiquitin-protein ligase RNF185-like, transcript variant X1
E3 ubiquitin-protein ligase RNF185-like, transcript variant X3
E3 ubiquitin-protein ligase RNF185-like isoform X1
E3 ubiquitin-protein ligase RNF185-like isoform X2
prenylated Rab acceptor protein 1-like, transcript variant X1
prenylated Rab acceptor protein 1-like, transcript variant X2
prenylated Rab acceptor protein 1-like isoform X2
prenylated Rab acceptor protein 1-like isoform X1
serine/arginine repetitive matrix protein 1-like, transcript variant X2
serine/arginine repetitive matrix protein 1-like isoform X2
serine/arginine repetitive matrix protein 1-like, transcript variant X1
serine/arginine repetitive matrix protein 1-like isoform X1
glutamate receptor ionotropic, delta-1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123750692, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 70 samples with support for all annotated introns
uncharacterized protein LOC123750692 isoform X1
uncharacterized LOC123750692, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
uncharacterized protein LOC123750692 isoform X2
prolyl 4-hydroxylase subunit alpha-3-like
NAD-dependent protein deacetylase sirtuin-2-like, transcript variant X2
NAD-dependent protein deacetylase sirtuin-2-like, transcript variant X3
NAD-dependent protein deacetylase sirtuin-2-like, transcript variant X1
NAD-dependent protein deacetylase sirtuin-2-like isoform X2
NAD-dependent protein deacetylase sirtuin-2-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
N6-adenosine-methyltransferase subunit METTL3-like
A disintegrin and metalloproteinase with thrombospondin motifs 1-like, transcript variant X2
A disintegrin and metalloproteinase with thrombospondin motifs 1-like, transcript variant X3
A disintegrin and metalloproteinase with thrombospondin motifs 1-like, transcript variant X1
A disintegrin and metalloproteinase with thrombospondin motifs 1-like, transcript variant X4
A disintegrin and metalloproteinase with thrombospondin motifs 1-like isoform X2
A disintegrin and metalloproteinase with thrombospondin motifs 1-like isoform X1
A disintegrin and metalloproteinase with thrombospondin motifs 1-like isoform X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized LOC123750783, transcript variant X2
uncharacterized LOC123750783, transcript variant X1
transcription initiation factor TFIID subunit 9-like
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00020
probable ATP-dependent RNA helicase kurz
probable serine/threonine-protein kinase DDB_G0271682
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
armadillo repeat-containing X-linked protein 4-like
organic cation transporter protein-like, transcript variant X1
organic cation transporter protein-like, transcript variant X3
organic cation transporter protein-like, transcript variant X2
organic cation transporter protein-like isoform X2
organic cation transporter protein-like isoform X1
C-type lectin-like, transcript variant X3
C-type lectin-like, transcript variant X2
C-type lectin-like, transcript variant X1
C-type lection lectoxin-Enh3-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
COORDINATES: nucleotide motif:Rfam:12.0:RF00001
uncharacterized PPE family protein PPE24-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 30% coverage of the annotated genomic feature by RNAseq alignments
similar to RNA sequence (same species):INSD:GBEV01001750.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 55 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 49 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
beta-1,3-glucan-binding protein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
beta-1,3-glucan-binding protein-like isoform X2
beta-1,3-glucan-binding protein-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 90 samples with support for all annotated introns
beta-1,3-glucan-binding protein-like isoform X1
serine-aspartate repeat-containing protein I-like
protein O-mannosyl-transferase TMTC2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 69% coverage of the annotated genomic feature by RNAseq alignments
COORDINATES: nucleotide motif:Rfam:12.0:RF00004
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 40% coverage of the annotated genomic feature by RNAseq alignments
glutamate receptor ionotropic, kainate 4-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 45% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 49% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 41% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 73% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 38 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 96% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 71% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123750928, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
uncharacterized LOC123750928, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized protein LOC123750928 isoform X1
uncharacterized protein LOC123750928 isoform X2
uncharacterized LOC123750946, transcript variant X1
uncharacterized protein LOC123750946 isoform X1
uncharacterized LOC123750946, transcript variant X2
uncharacterized protein LOC123750946 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 83% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123750961, transcript variant X2
uncharacterized LOC123750961, transcript variant X1
uncharacterized protein LOC123750961 isoform X2
uncharacterized protein LOC123750961 isoform X1
uncharacterized LOC123750989, transcript variant X2
uncharacterized LOC123750989, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
uncharacterized protein LOC123750989 isoform X2
uncharacterized protein LOC123750989 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
probable DNA replication complex GINS protein PSF2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: probable DNA replication complex GINS protein PSF2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
baculoviral IAP repeat-containing protein 8-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
protein spinster homolog 1-like, transcript variant X2
protein spinster homolog 1-like, transcript variant X1
protein spinster homolog 1-like isoform X1
protein spinster homolog 1-like isoform X2
C-type lectin 1-like, transcript variant X2
C-type lectin 1-like, transcript variant X1
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
juvenile hormone esterase-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
juvenile hormone esterase-like, transcript variant X1
pyrethroid hydrolase Ces2a-like isoform X1
juvenile hormone esterase-like isoform X2
piggyBac transposable element-derived protein 4-like
kinase D-interacting substrate of 220 kDa-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 48 samples with support for all annotated introns
uncharacterized LOC123751101, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 36 samples with support for all annotated introns
uncharacterized protein LOC123751101 isoform X2
uncharacterized LOC123751101, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 44 samples with support for all annotated introns
uncharacterized protein LOC123751101 isoform X1
transfer RNA glutamine (anticodon UUG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: formin-like protein 20
U1 small nuclear ribonucleoprotein 70 kDa-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 74% coverage of the annotated genomic feature by RNAseq alignments
serine/threonine-protein kinase CTR1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
serine-rich adhesin for platelets-like, transcript variant X2
serine-rich adhesin for platelets-like, transcript variant X3
serine-rich adhesin for platelets-like, transcript variant X6
serine-rich adhesin for platelets-like, transcript variant X5
serine-rich adhesin for platelets-like, transcript variant X4
serine-rich adhesin for platelets-like, transcript variant X1
serine-rich adhesin for platelets-like isoform X2
serine-rich adhesin for platelets-like isoform X3
serine-rich adhesin for platelets-like isoform X6
serine-rich adhesin for platelets-like isoform X5
serine-rich adhesin for platelets-like isoform X4
serine-rich adhesin for platelets-like isoform X1
serine-rich adhesin for platelets-like, transcript variant X7
serine-rich adhesin for platelets-like isoform X7
ankyrin repeat domain-containing protein 13D-like
uncharacterized LOC123751217, transcript variant X1
uncharacterized LOC123751217, transcript variant X3
uncharacterized LOC123751217, transcript variant X2
uncharacterized protein LOC123751217 isoform X1
uncharacterized protein LOC123751217 isoform X2
uncharacterized LOC123751257, transcript variant X2
uncharacterized LOC123751257, transcript variant X5
uncharacterized LOC123751257, transcript variant X3
uncharacterized LOC123751257, transcript variant X4
uncharacterized LOC123751257, transcript variant X1
uncharacterized protein LOC123751257 isoform X4
uncharacterized protein LOC123751257 isoform X2
uncharacterized protein LOC123751257 isoform X3
uncharacterized protein LOC123751257 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 48% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
facilitated trehalose transporter Tret1-like, transcript variant X2
facilitated trehalose transporter Tret1-like, transcript variant X1
uncharacterized LOC123751334, transcript variant X2
uncharacterized LOC123751334, transcript variant X1
uncharacterized protein LOC123751334 isoform X2
uncharacterized protein LOC123751334 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 54 samples with support for all annotated introns
uncharacterized LOC123751434, transcript variant X1
uncharacterized LOC123751434, transcript variant X2
uncharacterized protein LOC123751434 isoform X1
uncharacterized protein LOC123751434 isoform X2
kielin/chordin-like protein, transcript variant X1
kielin/chordin-like protein, transcript variant X2
kielin/chordin-like protein, transcript variant X5
kielin/chordin-like protein, transcript variant X8
kielin/chordin-like protein, transcript variant X3
kielin/chordin-like protein, transcript variant X4
kielin/chordin-like protein, transcript variant X6
kielin/chordin-like protein, transcript variant X7
long-chain-fatty-acid--CoA ligase 4-like, transcript variant X1
long-chain-fatty-acid--CoA ligase 4-like, transcript variant X2
long-chain-fatty-acid--CoA ligase 4-like isoform X1
long-chain-fatty-acid--CoA ligase 4-like isoform X2
aminopeptidase N-like, transcript variant X2
aminopeptidase N-like, transcript variant X4
aminopeptidase N-like, transcript variant X3
multiple epidermal growth factor-like domains protein 6
aminopeptidase N-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
aminopeptidase N-like, transcript variant X5
putative uncharacterized protein DDB_G0282499
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
spectrin alpha chain-like, transcript variant X1
spectrin alpha chain-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123751792, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123751792, transcript variant X2
cell growth regulator with RING finger domain protein 1-like, transcript variant X1
cell growth regulator with RING finger domain protein 1-like, transcript variant X2
cell growth regulator with RING finger domain protein 1-like
uncharacterized LOC123751824, transcript variant X3
uncharacterized LOC123751824, transcript variant X1
uncharacterized protein LOC123751824 isoform X1
uncharacterized LOC123751824, transcript variant X2
uncharacterized protein LOC123751824 isoform X2
uncharacterized protein LOC123751824 isoform X3
uncharacterized LOC123751847, transcript variant X2
uncharacterized LOC123751847, transcript variant X4
uncharacterized LOC123751847, transcript variant X5
uncharacterized LOC123751847, transcript variant X3
uncharacterized LOC123751847, transcript variant X1
uncharacterized protein LOC123751847 isoform X3
uncharacterized protein LOC123751847 isoform X4
uncharacterized protein LOC123751847 isoform X2
uncharacterized protein LOC123751847 isoform X1
tryptophan--tRNA ligase, cytoplasmic-like, transcript variant X1
tryptophan--tRNA ligase, cytoplasmic-like, transcript variant X2
tryptophan--tRNA ligase, cytoplasmic-like isoform X1
tryptophan--tRNA ligase, cytoplasmic-like, transcript variant X4
tryptophan--tRNA ligase, cytoplasmic-like, transcript variant X5
tryptophan--tRNA ligase, cytoplasmic-like, transcript variant X3
tryptophan--tRNA ligase, cytoplasmic-like isoform X2
tryptophan--tRNA ligase, cytoplasmic-like isoform X3
tryptophan--tRNA ligase, cytoplasmic-like isoform X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 71% coverage of the annotated genomic feature by RNAseq alignments
wax ester synthase/diacylglycerol acyltransferase 5-like
probable palmitoyltransferase ZDHHC24, transcript variant X2
probable palmitoyltransferase ZDHHC24, transcript variant X1
uncharacterized LOC123751972, transcript variant X2
uncharacterized LOC123751972, transcript variant X1
uncharacterized protein LOC123751972 isoform X2
uncharacterized protein LOC123751972 isoform X1
similar to RNA sequence (same species):INSD:GBEV01063291.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 252 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 97% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 252 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
high mobility group protein HMG-I/HMG-Y-like
F-box/SPRY domain-containing protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
F-box/SPRY domain-containing protein 1-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
F-box/SPRY domain-containing protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 95 samples with support for all annotated introns
F-box/SPRY domain-containing protein 1-like isoform X1
F-box/SPRY domain-containing protein 1-like isoform X2
F-box/SPRY domain-containing protein 1-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like, transcript variant X2
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like, transcript variant X3
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like, transcript variant X5
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like, transcript variant X4
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like, transcript variant X1
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like isoform X1
glycerol-3-phosphate dehydrogenase [NAD(+)], cytoplasmic-like isoform X2
protein Shroom3-like, transcript variant X6
protein Shroom3-like, transcript variant X1
protein Shroom3-like, transcript variant X2
protein Shroom3-like, transcript variant X3
protein Shroom3-like, transcript variant X4
protein Shroom3-like, transcript variant X5
transcriptional regulatory protein AlgP-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
dihydroxyacetone phosphate acyltransferase-like, transcript variant X2
dihydroxyacetone phosphate acyltransferase-like, transcript variant X3
dihydroxyacetone phosphate acyltransferase-like, transcript variant X1
dihydroxyacetone phosphate acyltransferase-like isoform X2
dihydroxyacetone phosphate acyltransferase-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 97% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123752167, transcript variant X1
uncharacterized LOC123752167, transcript variant X2
uncharacterized protein LOC123752167 isoform X1
uncharacterized protein LOC123752167 isoform X2
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X7
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X8
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X3
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X1
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X5
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X4
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
mitogen-activated protein kinase kinase kinase 15-like isoform X1
mitogen-activated protein kinase kinase kinase 15-like isoform X5
mitogen-activated protein kinase kinase kinase 15-like isoform X4
mitogen-activated protein kinase kinase kinase 15-like isoform X3
mitogen-activated protein kinase kinase kinase 5-like isoform X6
mitogen-activated protein kinase kinase kinase 15-like, transcript variant X2
mitogen-activated protein kinase kinase kinase 15-like isoform X2
mitogen-activated protein kinase kinase kinase 15-like isoform X7
nuclear envelope integral membrane protein 1-like, transcript variant X2
nuclear envelope integral membrane protein 1-like, transcript variant X1
nuclear envelope integral membrane protein 1-like isoform X2
nuclear envelope integral membrane protein 1-like isoform X1
dipeptidyl peptidase 1-like, transcript variant X1
dipeptidyl peptidase 1-like, transcript variant X3
dipeptidyl peptidase 1-like, transcript variant X2
dipeptidyl peptidase 1-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns