Procambarus clarkii strain Jiangsu linkage group LG05, ASM2042438v2, whole genome shotgun sequence.
Procambarus clarkii (red swamp crayfish)
Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Multicrustacea; Malacostraca; Eumalacostraca; Eucarida; Decapoda; Pleocyemata; Astacidea; Astacoidea; Cambaridae; Procambarus.
A chromosome-level reference genome of red swamp crayfish Procambarus clarkii provides insights into the gene families regarding growth or development in crustaceans
REFSEQ INFORMATION: The reference sequence is identical to\nCM035477.1.\nAssembly name: ASM2042438v2\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Freshwater Fisheries Research\nInstitute of Jiangsu Province, Nanjing 210017, China on 2021/10/12.\nThe original whole-genome shotgun project has the accession\nJAIWQB000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Freshwater Fisheries Research Institute\n of Jiangsu Province, Nanjing 210017,\n China\nAssembly Method :: LACHESIS v. may-2020\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: PacBio RS\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI\nAnnotation Status :: Full annotation\nAnnotation Name :: Procambarus clarkii Annotation\n Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 9.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
Derived by automated computational analysis using gene prediction method: Gnomon.
protein O-mannosyl-transferase TMTC1-like
COORDINATES: polyA evidence [ECO:0006239]
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:12.0:RF00560
enoyl-CoA hydratase, mitochondrial-like, transcript variant X1
enoyl-CoA hydratase, mitochondrial-like, transcript variant X2
enoyl-CoA hydratase, mitochondrial-like isoform X1
enoyl-CoA hydratase, mitochondrial-like isoform X2
similar to RNA sequence (same species):INSD:GARH01002706.1
similar to RNA sequence (same species):INSD:GBEV01006942.1
annotated by transcript or proteomic data
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 253 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 106 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
ATPase family AAA domain-containing protein 2-like, transcript variant X1
ATPase family AAA domain-containing protein 2-like, transcript variant X2
ATPase family AAA domain-containing protein 2-like
uncharacterized LOC123767363, transcript variant X1
uncharacterized LOC123767363, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
uncharacterized LOC123767347, transcript variant X2
uncharacterized LOC123767347, transcript variant X1
NPC intracellular cholesterol transporter 2 homolog a-like
tetratricopeptide repeat protein 19 homolog, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 35 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 109 samples with support for all annotated introns
rhythmically expressed gene 2 protein-like, transcript variant X2
rhythmically expressed gene 2 protein-like, transcript variant X1
rhythmically expressed gene 2 protein-like, transcript variant X3
rhythmically expressed gene 2 protein-like, transcript variant X4
rhythmically expressed gene 2 protein-like isoform X1
rhythmically expressed gene 2 protein-like isoform X2
alpha-2-macroglobulin receptor-associated protein-like
abasic site processing protein HMCES-like
transcription intermediary factor 1-alpha-like, transcript variant X3
transcription intermediary factor 1-alpha-like, transcript variant X1
transcription intermediary factor 1-alpha-like, transcript variant X2
transcription intermediary factor 1-alpha-like isoform X3
E3 ubiquitin-protein ligase TRIM33-like isoform X2
E3 ubiquitin-protein ligase TRIM33-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
uncharacterized LOC123767468, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
uncharacterized LOC123767468, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 72 samples with support for all annotated introns
uncharacterized protein LOC123767468 isoform X1
uncharacterized protein LOC123767468 isoform X2
serine/threonine-protein kinase fray2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 76% coverage of the annotated genomic feature by RNAseq alignments
transmembrane protein 248-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
transmembrane protein 248-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
transmembrane protein 248-like isoform X1
transmembrane protein 248-like, transcript variant X3
transmembrane protein 248-like isoform X2
AP-4 complex subunit beta-1-like, transcript variant X2
AP-4 complex subunit beta-1-like, transcript variant X8
AP-4 complex subunit beta-1-like, transcript variant X5
AP-4 complex subunit beta-1-like, transcript variant X9
AP-4 complex subunit beta-1-like, transcript variant X1
AP-4 complex subunit beta-1-like, transcript variant X7
AP-4 complex subunit beta-1-like, transcript variant X6
AP-4 complex subunit beta-1-like, transcript variant X3
AP-4 complex subunit beta-1-like, transcript variant X4
AP-4 complex subunit beta-1-like isoform X1
AP-4 complex subunit beta-1-like isoform X3
AP-4 complex subunit beta-1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
pyrokinin-1 receptor-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
pyrokinin-1 receptor-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
pyrokinin-1 receptor-like, transcript variant X1
lectin subunit alpha-like, transcript variant X2
lectin subunit alpha-like, transcript variant X1
protein O-linked-mannose beta-1,2-N-acetylglucosaminyltransferase 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
similar to RNA sequence (same species):INSD:GBEV01012993.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 3230 bases not found in genome assembly
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 2996 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
juvenile hormone esterase-like, transcript variant X1
juvenile hormone esterase-like, transcript variant X2
juvenile hormone esterase-like isoform X1
juvenile hormone esterase-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized LOC123767655, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 79 samples with support for all annotated introns
uncharacterized LOC123767655, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 77 samples with support for all annotated introns
uncharacterized LOC123767655, transcript variant X2
uncharacterized MFS-type transporter YhjX-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 77 samples with support for all annotated introns
uncharacterized MFS-type transporter YhjX-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 82 samples with support for all annotated introns
uncharacterized MFS-type transporter YhjX-like isoform X2
uncharacterized MFS-type transporter YhjX-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 62% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
transmembrane protein 242-like, transcript variant X2
transmembrane protein 242-like, transcript variant X1
transmembrane protein 242-like isoform X2
transmembrane protein 242-like isoform X1
uncharacterized LOC123767702, transcript variant X1
uncharacterized LOC123767702, transcript variant X2
uncharacterized protein LOC123767702 isoform X1
uncharacterized protein LOC123767702 isoform X2
uncharacterized LOC123767711, transcript variant X1
uncharacterized LOC123767711, transcript variant X2
uncharacterized protein LOC123767711 isoform X1
uncharacterized protein LOC123767711 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins, and 94% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 97% coverage of the annotated genomic feature by RNAseq alignments
proton-coupled folate transporter-like, transcript variant X1
similar to RNA sequence (same species):INSD:GARH01004631.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 1317 bases not found in genome assembly
proton-coupled folate transporter-like, transcript variant X2
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 1039 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC123767730, transcript variant X2
uncharacterized LOC123767730, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 20 samples with support for all annotated introns
uncharacterized protein LOC123767730 isoform X2
uncharacterized protein LOC123767730 isoform X1
integrator complex subunit 8-like, transcript variant X1
integrator complex subunit 8-like, transcript variant X2
integrator complex subunit 8-like isoform X1
integrator complex subunit 8-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 7 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 98% coverage of the annotated genomic feature by RNAseq alignments
U-scoloptoxin(16)-Er13a-like, transcript variant X2
U-scoloptoxin(16)-Er13a-like, transcript variant X1
uncharacterized protein LOC123767759 isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
neurogenic differentiation factor 1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
THUMP domain-containing protein 1 homolog
stromal interaction molecule homolog, transcript variant X9
stromal interaction molecule homolog, transcript variant X15
stromal interaction molecule homolog, transcript variant X7
stromal interaction molecule homolog, transcript variant X5
stromal interaction molecule homolog, transcript variant X3
stromal interaction molecule homolog, transcript variant X2
stromal interaction molecule homolog, transcript variant X10
stromal interaction molecule homolog, transcript variant X4
stromal interaction molecule homolog, transcript variant X12
stromal interaction molecule homolog, transcript variant X8
stromal interaction molecule homolog, transcript variant X14
stromal interaction molecule homolog, transcript variant X6
stromal interaction molecule homolog, transcript variant X13
stromal interaction molecule homolog, transcript variant X1
uncharacterized protein LOC123767773 isoform X9
uncharacterized protein LOC123767773 isoform X15
uncharacterized protein LOC123767773 isoform X7
uncharacterized protein LOC123767773 isoform X5
uncharacterized protein LOC123767773 isoform X3
uncharacterized protein LOC123767773 isoform X2
uncharacterized protein LOC123767773 isoform X10
uncharacterized protein LOC123767773 isoform X4
stromal interaction molecule 1-like isoform X12
uncharacterized protein LOC123767773 isoform X8
stromal interaction molecule homolog isoform X14
uncharacterized protein LOC123767773 isoform X6
stromal interaction molecule homolog isoform X13
uncharacterized protein LOC123767773 isoform X1
stromal interaction molecule homolog, transcript variant X11
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
uncharacterized protein LOC123767773 isoform X11
succinate--CoA ligase [ADP-forming] subunit beta, mitochondrial-like
ecdysone receptor-like, transcript variant X7
ecdysone receptor-like, transcript variant X12
ecdysone receptor-like, transcript variant X4
ecdysone receptor-like, transcript variant X10
ecdysone receptor-like, transcript variant X2
ecdysone receptor-like, transcript variant X11
ecdysone receptor-like, transcript variant X3
ecdysone receptor-like, transcript variant X9
ecdysone receptor-like, transcript variant X8
ecdysone receptor-like, transcript variant X1
ecdysone receptor-like, transcript variant X19
ecdysone receptor-like, transcript variant X16
ecdysone receptor-like, transcript variant X14
ecdysone receptor-like, transcript variant X6
ecdysone receptor-like, transcript variant X5
ecdysone receptor-like, transcript variant X18
ecdysone receptor-like, transcript variant X15
ecdysone receptor-like, transcript variant X17
ecdysone receptor-like, transcript variant X13
basic salivary proline-rich protein 2-like
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon UAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
uncharacterized protein LOC123767944 isoform X9
uncharacterized protein LOC123767944 isoform X14
uncharacterized protein LOC123767944 isoform X17
serine/arginine repetitive matrix protein 2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized LOC123768076, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 49 samples with support for all annotated introns
uncharacterized LOC123768076, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 29 samples with support for all annotated introns
uncharacterized LOC123768076, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 70 samples with support for all annotated introns
uncharacterized LOC123768076, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 19 samples with support for all annotated introns
uncharacterized LOC123768076, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
uncharacterized LOC123768076, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 33 samples with support for all annotated introns
uncharacterized LOC123768087, transcript variant X4
uncharacterized LOC123768087, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 101 samples with support for all annotated introns
uncharacterized LOC123768087, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 59 samples with support for all annotated introns
uncharacterized LOC123768087, transcript variant X5
uncharacterized LOC123768087, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 89 samples with support for all annotated introns
uncharacterized protein LOC123768087 isoform X1
uncharacterized protein LOC123768087 isoform X2
uncharacterized protein LOC123768087 isoform X3
uncharacterized LOC123768087, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 45 samples with support for all annotated introns
uncharacterized protein LOC123768087 isoform X4
eukaryotic translation initiation factor 4 gamma-like
uncharacterized LOC123768119, transcript variant X1
uncharacterized LOC123768119, transcript variant X2
uncharacterized LOC123768119, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 51 samples with support for all annotated introns
uncharacterized protein LOC123768119 isoform X1
uncharacterized protein LOC123768119 isoform X2
uncharacterized protein LOC123768119 isoform X3
septation ring formation regulator EzrA-like
pollen-specific leucine-rich repeat extensin-like protein 1
hyphally regulated cell wall protein 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 1 sample with support for all annotated introns
nucleolar and coiled-body phosphoprotein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 4 samples with support for all annotated introns
nucleolar and coiled-body phosphoprotein 1-like, transcript variant X3
nucleolar and coiled-body phosphoprotein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 68 samples with support for all annotated introns
nucleolar and coiled-body phosphoprotein 1-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
nucleolar and coiled-body phosphoprotein 1-like, transcript variant X4
nucleolar and coiled-body phosphoprotein 1-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
nucleolar and coiled-body phosphoprotein 1-like isoform X2
uncharacterized protein LOC123768140 isoform X1
uncharacterized protein LOC123768140 isoform X3
uncharacterized protein LOC123768140 isoform X4
uncharacterized protein LOC123768140 isoform X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 67 samples with support for all annotated introns
ras-related protein Rab-9A-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 40 samples with support for all annotated introns
ras-related protein Rab-9A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 74 samples with support for all annotated introns
ras-related protein Rab-9A-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 31 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 30 samples with support for all annotated introns
sarcoplasmic calcium-binding protein 1, transcript variant X5
sarcoplasmic calcium-binding protein 1, transcript variant X4
sarcoplasmic calcium-binding protein 1, transcript variant X2
sarcoplasmic calcium-binding protein 1, transcript variant X3
sarcoplasmic calcium-binding protein 1, transcript variant X1
sarcoplasmic calcium-binding protein 1 isoform X1
sarcoplasmic calcium-binding protein 1 isoform X5
sarcoplasmic calcium-binding protein 1 isoform X4
sarcoplasmic calcium-binding protein 1 isoform X2
sarcoplasmic calcium-binding protein 1 isoform X3
uncharacterized LOC123768216, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 31 samples with support for all annotated introns
uncharacterized LOC123768216, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
uncharacterized LOC123768216, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
similar to RNA sequence (same species):INSD:GBEV01007943.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 128 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: added 128 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: nucleotide motif:Rfam:12.0:RF00012
COORDINATES: nucleotide motif:Rfam:12.0:RF00026
eukaryotic translation initiation factor 4E1-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 65% coverage of the annotated genomic feature by RNAseq alignments
uncharacterized PE-PGRS family protein PE_PGRS46-like
dnaJ homolog subfamily C member 21-like, transcript variant X2
dnaJ homolog subfamily C member 21-like, transcript variant X1
RNA-binding protein 8A-like, transcript variant X2
RNA-binding protein 8A-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 14% coverage of the annotated genomic feature by RNAseq alignments
proline-rich receptor-like protein kinase PERK2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
dual specificity protein phosphatase 3-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
dual specificity protein phosphatase 3-like, transcript variant X2
dual specificity protein phosphatase 3-like, transcript variant X1
dual specificity protein phosphatase 3-like, transcript variant X7
dual specificity protein phosphatase 3-like, transcript variant X4
dual specificity protein phosphatase 3-like, transcript variant X5
dual specificity protein phosphatase 3-like, transcript variant X3
dual specificity protein phosphatase 3-like, transcript variant X6
recQ-mediated genome instability protein 1-like, transcript variant X3
recQ-mediated genome instability protein 1-like, transcript variant X1
recQ-mediated genome instability protein 1-like, transcript variant X2
recQ-mediated genome instability protein 1-like isoform X1
recQ-mediated genome instability protein 1-like, transcript variant X4
recQ-mediated genome instability protein 1-like isoform X2
transient receptor potential channel pyrexia-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 18 samples with support for all annotated introns
importin subunit beta-1-like, transcript variant X1
importin subunit beta-1-like, transcript variant X2
importin subunit beta-1-like, transcript variant X3
major facilitator superfamily domain-containing protein 8-like, transcript variant X5
major facilitator superfamily domain-containing protein 8-like, transcript variant X2
major facilitator superfamily domain-containing protein 8-like, transcript variant X1
major facilitator superfamily domain-containing protein 8-like, transcript variant X4
major facilitator superfamily domain-containing protein 8-like, transcript variant X3
major facilitator superfamily domain-containing protein 8-like
ubiquitin-associated domain-containing protein 2-like
uncharacterized LOC123768447, transcript variant X3
uncharacterized LOC123768447, transcript variant X1
uncharacterized LOC123768447, transcript variant X2
uncharacterized protein LOC123768447 isoform X1
uncharacterized protein LOC123768447 isoform X3
uncharacterized protein LOC123768447 isoform X2
uncharacterized LOC123768469, transcript variant X3
uncharacterized LOC123768469, transcript variant X1
uncharacterized LOC123768469, transcript variant X2
uncharacterized LOC123768481, transcript variant X2
uncharacterized LOC123768481, transcript variant X1
uncharacterized protein LOC123768481 isoform X1
uncharacterized protein LOC123768481 isoform X2
transfer RNA isoleucine (anticodon AAU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA arginine (anticodon ACG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
snake venom metalloprotease inhibitor 02A10-like
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X2
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X3
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X1
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like, transcript variant X4
nascent polypeptide-associated complex subunit alpha, muscle-specific form-like
acetyl-coenzyme A synthetase, cytoplasmic-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
acetyl-coenzyme A synthetase, cytoplasmic-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 76 samples with support for all annotated introns
acetyl-coenzyme A synthetase, cytoplasmic-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 15 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 80 samples with support for all annotated introns
acetyl-coenzyme A synthetase, cytoplasmic-like isoform X1
acetyl-coenzyme A synthetase, cytoplasmic-like isoform X2
acetyl-coenzyme A synthetase, cytoplasmic-like isoform X3
neurofilament medium polypeptide-like, transcript variant X1
neurofilament medium polypeptide-like, transcript variant X3
neurofilament medium polypeptide-like, transcript variant X2
neurofilament medium polypeptide-like isoform X2
phosphomevalonate kinase-like, transcript variant X3
phosphomevalonate kinase-like isoform X3
phosphomevalonate kinase-like, transcript variant X2
phosphomevalonate kinase-like, transcript variant X1
phosphomevalonate kinase-like isoform X1
phosphomevalonate kinase-like isoform X2
glutathione S-transferase 1-like, transcript variant X1
glutathione S-transferase 1-like isoform X1
glutathione S-transferase 1-like, transcript variant X3
glutathione S-transferase 1-like, transcript variant X2
glutathione S-transferase 1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 61 samples with support for all annotated introns
COORDINATES: nucleotide motif:Rfam:12.0:RF00015
D-beta-hydroxybutyrate dehydrogenase, mitochondrial-like
ras-like GTP-binding protein RhoL, transcript variant X1
ras-like GTP-binding protein RhoL, transcript variant X2
hydroxysteroid dehydrogenase-like protein 2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 108 samples with support for all annotated introns
irregular chiasm C-roughest protein-like
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon CGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
eukaryotic translation initiation factor 3 subunit A-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
putative uncharacterized protein DDB_G0287457
BTB/POZ domain-containing protein 2-like, transcript variant X4
BTB/POZ domain-containing protein 2-like, transcript variant X2
BTB/POZ domain-containing protein 2-like, transcript variant X1
BTB/POZ domain-containing protein 2-like, transcript variant X3
BTB/POZ domain-containing protein 2-like, transcript variant X5
BTB/POZ domain-containing protein 2-like isoform X1
BTB/POZ domain-containing protein 6-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 94% coverage of the annotated genomic feature by RNAseq alignments
dual specificity testis-specific protein kinase 1-like
repetitive proline-rich cell wall protein 2-like
proline-rich receptor-like protein kinase PERK9
origin recognition complex subunit 1-like, transcript variant X1
origin recognition complex subunit 1-like, transcript variant X2
origin recognition complex subunit 1-like isoform X1
origin recognition complex subunit 1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 39 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
protein kinase C-like, transcript variant X2
protein kinase C-like, transcript variant X4
protein kinase C-like, transcript variant X1
protein kinase C-like, transcript variant X3
alpha-1,6-mannosyl-glycoprotein 2-beta-N-acetylglucosaminyltransferase-like
splicing factor, suppressor of white-apricot homolog
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
TRAF3-interacting protein 1-like, transcript variant X1
TRAF3-interacting protein 1-like, transcript variant X2
TRAF3-interacting protein 1-like, transcript variant X5
TRAF3-interacting protein 1-like, transcript variant X3
TRAF3-interacting protein 1-like, transcript variant X4
TRAF3-interacting protein 1-like, transcript variant X6
TRAF3-interacting protein 1-like isoform X1
TRAF3-interacting protein 1-like isoform X2
TRAF3-interacting protein 1-like isoform X5
TRAF3-interacting protein 1-like isoform X3
TRAF3-interacting protein 1-like isoform X4
similar to RNA sequence (same species):INSD:GBEV01110150.1
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: added 69 bases not found in genome assembly; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 93% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 99% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 27 Proteins
regulator of G-protein signaling 2-like, transcript variant X1
regulator of G-protein signaling 3-like isoform X1
regulator of G-protein signaling 2-like, transcript variant X2
regulator of G-protein signaling 2-like isoform X2
centrosomal protein of 290 kDa-like, transcript variant X3
centrosomal protein of 290 kDa-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
centrosomal protein of 290 kDa-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
centrosomal protein of 290 kDa-like isoform X3
centrosomal protein of 290 kDa-like isoform X2
centrosomal protein of 290 kDa-like isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 22 samples with support for all annotated introns
ras-related and estrogen-regulated growth inhibitor-like, transcript variant X1
ras-related and estrogen-regulated growth inhibitor-like isoform X1
ras-related and estrogen-regulated growth inhibitor-like, transcript variant X2
ras-related and estrogen-regulated growth inhibitor-like isoform X2
uncharacterized LOC123768929, transcript variant X5
uncharacterized LOC123768929, transcript variant X2
uncharacterized LOC123768929, transcript variant X1
uncharacterized LOC123768929, transcript variant X4
uncharacterized LOC123768929, transcript variant X3
uncharacterized LOC123768929, transcript variant X6
uncharacterized protein LOC123768929 isoform X1
uncharacterized protein LOC123768929 isoform X4
uncharacterized protein LOC123768929 isoform X3
uncharacterized protein LOC123768929 isoform X6
uncharacterized protein LOC123768929 isoform X2
uncharacterized protein LOC123768929 isoform X5
endothelial zinc finger protein induced by tumor necrosis factor alpha-like
zinc finger and BTB domain-containing protein 24-like, transcript variant X5
zinc finger and BTB domain-containing protein 24-like, transcript variant X9
zinc finger and BTB domain-containing protein 24-like, transcript variant X2
zinc finger and BTB domain-containing protein 24-like, transcript variant X1
zinc finger and BTB domain-containing protein 24-like, transcript variant X3
zinc finger and BTB domain-containing protein 24-like, transcript variant X4
zinc finger and BTB domain-containing protein 24-like, transcript variant X7
zinc finger and BTB domain-containing protein 24-like, transcript variant X6
zinc finger and BTB domain-containing protein 24-like, transcript variant X8
zinc finger and BTB domain-containing protein 24-like
CAAX prenyl protease 1 homolog, transcript variant X4
CAAX prenyl protease 1 homolog, transcript variant X3
CAAX prenyl protease 1 homolog, transcript variant X2
CAAX prenyl protease 1 homolog, transcript variant X1
CAAX prenyl protease 1 homolog isoform X1
CAAX prenyl protease 1 homolog isoform X2
protein FAM186A-like, transcript variant X1
protein FAM186A-like, transcript variant X2
proteasome activator complex subunit 3-like
gastric triacylglycerol lipase-like, transcript variant X2
gastric triacylglycerol lipase-like, transcript variant X1
nuclear pore complex protein Nup153-like, transcript variant X1
nuclear pore complex protein Nup153-like, transcript variant X2
nuclear pore complex protein Nup153-like isoform X1
nuclear pore complex protein Nup153-like isoform X2
uncharacterized LOC123769109, transcript variant X2
uncharacterized LOC123769109, transcript variant X1
uncharacterized LOC123769072, transcript variant X1
uncharacterized LOC123769072, transcript variant X2
uncharacterized protein LOC123769072 isoform X1
uncharacterized protein LOC123769072 isoform X2
dentin sialophosphoprotein-like, transcript variant X1
dentin sialophosphoprotein-like, transcript variant X2
dentin sialophosphoprotein-like isoform X2
dentin sialophosphoprotein-like isoform X1
putative leucine-rich repeat-containing protein DDB_G0290503, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
putative leucine-rich repeat-containing protein DDB_G0290503, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
putative leucine-rich repeat-containing protein DDB_G0290503, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
putative leucine-rich repeat-containing protein DDB_G0290503 isoform X3
putative leucine-rich repeat-containing protein DDB_G0290503 isoform X1
putative leucine-rich repeat-containing protein DDB_G0290503 isoform X2
acyl-coenzyme A synthetase ACSM3, mitochondrial-like, transcript variant X2
acyl-coenzyme A synthetase ACSM3, mitochondrial-like, transcript variant X4
acyl-coenzyme A synthetase ACSM3, mitochondrial-like, transcript variant X1
acyl-coenzyme A synthetase ACSM3, mitochondrial-like, transcript variant X3
acyl-coenzyme A synthetase ACSM3, mitochondrial-like, transcript variant X5
acyl-coenzyme A synthetase ACSM3, mitochondrial-like
uncharacterized LOC123769167, transcript variant X4
uncharacterized protein LOC123769167 isoform X2
uncharacterized LOC123769167, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
uncharacterized LOC123769167, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
uncharacterized LOC123769167, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
uncharacterized protein LOC123769167 isoform X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins, and 42% coverage of the annotated genomic feature by RNAseq alignments
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 41 samples with support for all annotated introns