Vibrio vulnificus strain FORC_037 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Submitted (12-JUL-2016) Center for Food Safety and Toxicology, Seoul National University, 1 Gwanak-ro, Gwanak-gu, Seoul 151-921, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP016323.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: CLCbio CLC Genomics Workbench v. 7.5.1;\n PacBio SMRT Analysis v. 2.3.0\nGenome Coverage :: 463.28X\nSequencing Technology :: Illumina; PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/06/2023 06:13:38\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,709\nCDSs (total) :: 4,553\nGenes (coding) :: 4,470\nCDSs (with protein) :: 4,470\nGenes (RNA) :: 156\nrRNAs :: 12, 11, 11 (5S, 16S, 23S)\ncomplete rRNAs :: 12, 11, 11 (5S, 16S, 23S)\ntRNAs :: 118\nncRNAs :: 4\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 45 of 83\nPseudo Genes (incomplete) :: 45 of 83\nPseudo Genes (internal stop) :: 26 of 83\nPseudo Genes (multiple problems) :: 25 of 83\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Gyeonggi-do Institute of Health & Environment
COORDINATES: similar to AA sequence:RefSeq:WP_004402681.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611600.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS30-like element ISVvu6 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_017420820.1
COORDINATES: similar to AA sequence:RefSeq:WP_001035644.1
COORDINATES: similar to AA sequence:RefSeq:WP_011150419.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_017420607.1
COORDINATES: similar to AA sequence:RefSeq:WP_005527613.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017420652.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011150463.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005378522.1
COORDINATES: similar to AA sequence:RefSeq:WP_017428800.1
COORDINATES: similar to AA sequence:RefSeq:WP_011150468.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF023094.2
COORDINATES: protein motif:HMM:NF018784.2
COORDINATES: protein motif:HMM:NF017832.2
COORDINATES: similar to AA sequence:RefSeq:WP_005528068.1
COORDINATES: similar to AA sequence:RefSeq:WP_019820677.1
COORDINATES: similar to AA sequence:RefSeq:WP_017420793.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014232288.1
COORDINATES: similar to AA sequence:RefSeq:WP_008252826.1
COORDINATES: similar to AA sequence:RefSeq:WP_017050144.1
GO:0016846 - carbon-sulfur lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017420685.1
COORDINATES: similar to AA sequence:RefSeq:WP_011150410.1
COORDINATES: similar to AA sequence:RefSeq:WP_004400149.1
COORDINATES: similar to AA sequence:RefSeq:WP_012841686.1
COORDINATES: similar to AA sequence:RefSeq:WP_017420673.1
COORDINATES: similar to AA sequence:RefSeq:WP_013571730.1
COORDINATES: protein motif:HMM:NF013117.2
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013571655.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017428726.1
COORDINATES: similar to AA sequence:RefSeq:WP_010863449.1
COORDINATES: protein motif:HMM:NF040141.1
COORDINATES: similar to AA sequence:RefSeq:WP_005426371.1
COORDINATES: similar to AA sequence:RefSeq:WP_012534150.1
COORDINATES: similar to AA sequence:RefSeq:WP_017420624.1