Edwardsiella anguillarum ET080813 strain 80813 plasmid 1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Hafniaceae; Edwardsiella.
Edwardsiella comparative phylogenomics reveal the new intra/inter-species taxonomic relationships, virulence evolution and niche adaptation mechanisms
Complete genome sequence of Edwardsiella tarda 080813
Submitted (08-AUG-2013) State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P.R. China
Submitted (28-APR-2011) State Key Laboratory of Bioreactor Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai 200237, P. R China
REFSEQ INFORMATION: The reference sequence is identical to\nCP006665.1.\nBacteria available from Ehua Institute of Biotechnology, State Key\nLab of Bioreactor Engineering, East China University of Science and\nTechnology, 130 Meilong Rd, Shanghai, P.R. China.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 15:12:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,034\nCDSs (total) :: 3,908\nGenes (coding) :: 3,799\nCDSs (with protein) :: 3,799\nGenes (RNA) :: 126\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 98\nncRNAs :: 6\nPseudo Genes (total) :: 109\nCDSs (without protein) :: 109\nPseudo Genes (ambiguous residues) :: 0 of 109\nPseudo Genes (frameshifted) :: 56 of 109\nPseudo Genes (incomplete) :: 77 of 109\nPseudo Genes (internal stop) :: 37 of 109\nPseudo Genes (multiple problems) :: 42 of 109\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_001407380.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
isochorismatase family cysteine hydrolase
COORDINATES: similar to AA sequence:RefSeq:WP_000058717.1
COORDINATES: similar to AA sequence:RefSeq:WP_000804064.1
tetracycline efflux MFS transporter Tet(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000164043.1
tetracycline resistance transcriptional repressor TetR(A)
COORDINATES: similar to AA sequence:RefSeq:WP_000844627.1
COORDINATES: similar to AA sequence:RefSeq:WP_001138014.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001114073.1
As(III)-sensing metalloregulatory transcriptional repressor ArsR
COORDINATES: similar to AA sequence:RefSeq:WP_000855179.1
arsenite efflux transporter metallochaperone ArsD
COORDINATES: similar to AA sequence:RefSeq:WP_010999951.1
arsenite efflux transporter ATPase subunit ArsA
COORDINATES: similar to AA sequence:RefSeq:NP_312401.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000134999.1
COORDINATES: similar to AA sequence:RefSeq:WP_031587700.1
IS1380-like element ISEcp1 family transposase
arsenite efflux transporter membrane subunit ArsB
COORDINATES: similar to AA sequence:RefSeq:NP_312402.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
glutaredoxin-dependent arsenate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_004118313.1
COORDINATES: similar to AA sequence:RefSeq:WP_001556711.1
COORDINATES: similar to AA sequence:RefSeq:WP_012817690.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221000.1
IS6-like element IS26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001370723.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000743213.1
COORDINATES: similar to AA sequence:RefSeq:WP_001120888.1
IS91-like element ISVsa3 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_008891390.1
catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001043260.1
sulfonamide-resistant dihydropteroate synthase Sul2
COORDINATES: similar to AA sequence:RefSeq:WP_000954590.1
Arm DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:YP_005229637.1
IS110-like element IS5075 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014834018.1
COORDINATES: similar to AA sequence:RefSeq:WP_000147566.1
COORDINATES: similar to AA sequence:RefSeq:WP_001513488.1
COORDINATES: similar to AA sequence:RefSeq:NP_416498.2
IS5-like element ISKpn26 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_001097010.1
DNA replication terminus site-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_000371884.1
COORDINATES: similar to AA sequence:RefSeq:WP_008786584.1
COORDINATES: similar to AA sequence:RefSeq:WP_017086048.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221087.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221088.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221089.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011899322.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000790614.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002210562.1
COORDINATES: similar to AA sequence:RefSeq:WP_001553113.1
GO:0045893 - positive regulation of DNA-templated transcription [Evidence IEA]; GO:1902208 - regulation of bacterial-type flagellum assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001209046.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:YP_005221096.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221097.1
COORDINATES: similar to AA sequence:RefSeq:WP_016241615.1
COORDINATES: similar to AA sequence:RefSeq:WP_000470624.1
COORDINATES: similar to AA sequence:RefSeq:WP_008813493.1
GO:0018738 - S-formylglutathione hydrolase activity [Evidence IEA]
GO:0046292 - formaldehyde metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009639360.1
COORDINATES: similar to AA sequence:RefSeq:NP_308438.1
S-(hydroxymethyl)glutathione dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:NP_414891.4
formaldehyde-responsive transcriptional repressor FrmR
COORDINATES: similar to AA sequence:RefSeq:WP_011899315.1
COORDINATES: similar to AA sequence:RefSeq:WP_013141662.1
COORDINATES: similar to AA sequence:RefSeq:WP_000393785.1
COORDINATES: similar to AA sequence:RefSeq:WP_000648875.1
COORDINATES: similar to AA sequence:RefSeq:WP_001553058.1
COORDINATES: similar to AA sequence:RefSeq:YP_005220958.1
COORDINATES: similar to AA sequence:RefSeq:WP_001115073.1
COORDINATES: similar to AA sequence:RefSeq:WP_000268394.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221039.1
COORDINATES: similar to AA sequence:RefSeq:WP_013141528.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221041.1
COORDINATES: protein motif:HMM:NF014442.2
COORDINATES: similar to AA sequence:RefSeq:WP_000628093.1
COORDINATES: similar to AA sequence:RefSeq:WP_001460357.1
COORDINATES: similar to AA sequence:RefSeq:WP_000366822.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010845927.1
COORDINATES: similar to AA sequence:RefSeq:WP_001326173.1
COORDINATES: similar to AA sequence:RefSeq:WP_000178858.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0015074 - DNA integration [Evidence IEA]
Members of this protein family are the putative conjugative coupling factor, TraD, as the term is used for the SXT and TOL plasmid systems; Derived by automated computational analysis using gene prediction method: Protein Homology.
conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_000332868.1
COORDINATES: similar to AA sequence:RefSeq:WP_000743450.1
COORDINATES: similar to AA sequence:RefSeq:WP_000433889.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_001049717.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_000794249.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_000595749.1
COORDINATES: protein motif:HMM:TIGR02747.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: protein motif:HMM:NF016820.2
COORDINATES: similar to AA sequence:RefSeq:WP_000606836.1
COORDINATES: similar to AA sequence:RefSeq:WP_001259344.1
COORDINATES: similar to AA sequence:RefSeq:WP_000637387.1
COORDINATES: similar to AA sequence:RefSeq:WP_013184404.1
COORDINATES: similar to AA sequence:RefSeq:WP_017085233.1
COORDINATES: similar to AA sequence:RefSeq:WP_001447719.1
TrbC family F-type conjugative pilus assembly protein
COORDINATES: similar to AA sequence:RefSeq:WP_001337754.1
COORDINATES: similar to AA sequence:RefSeq:WP_000983283.1
COORDINATES: similar to AA sequence:RefSeq:WP_001256484.1
conjugal transfer mating pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_013141559.1
COORDINATES: similar to AA sequence:RefSeq:WP_013141560.1
COORDINATES: similar to AA sequence:RefSeq:WP_000547565.1
COORDINATES: similar to AA sequence:RefSeq:WP_007041934.1
CbbQ/NirQ/NorQ C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_000739140.1
COORDINATES: similar to AA sequence:RefSeq:WP_000254979.1
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000706865.1
COORDINATES: similar to AA sequence:RefSeq:WP_000170086.1
COORDINATES: similar to AA sequence:RefSeq:WP_000039317.1
COORDINATES: similar to AA sequence:RefSeq:WP_000115104.1
COORDINATES: similar to AA sequence:RefSeq:WP_000025280.1
COORDINATES: similar to AA sequence:RefSeq:WP_013141572.1
COORDINATES: similar to AA sequence:RefSeq:WP_001176699.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000994741.1
COORDINATES: similar to AA sequence:RefSeq:WP_000410925.1
COORDINATES: similar to AA sequence:RefSeq:WP_000201432.1
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017849606.1
COORDINATES: similar to AA sequence:RefSeq:WP_001093867.1
COORDINATES: similar to AA sequence:RefSeq:WP_000071869.1
GO:0002953 - 5'-deoxynucleotidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000184084.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221056.1
COORDINATES: similar to AA sequence:RefSeq:WP_001553094.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221059.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221060.1
COORDINATES: similar to AA sequence:RefSeq:YP_005221062.1
COORDINATES: similar to AA sequence:RefSeq:WP_016236492.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005221073.1
COORDINATES: protein motif:HMM:NF022633.2