Phocaeicola salanitronis DSM 18170 plasmid pBACSA02, complete sequence.
type: Entry
definition: Phocaeicola salanitronis DSM 18170 plasmid pBACSA02, complete sequence.
sequence version: NC_015168.1
sequence date: 2022-10-06
sequence: sequence
division: CON
label: NC_015168.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00713589
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Phocaeicola salanitronis DSM 18170
organism: Phocaeicola salanitronis DSM 18170
taxonomy: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002532.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087335\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Bacteroides salanitronis BL78, DSM 18170\ncollection_date :: isolated by P. T. N. Lan\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Japan\nenvironment :: Host\nnum_replicons :: 4\nref_biomaterial :: DSM 18170, CCUG 54637, JCM 13657\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Anaerobe\nisol_growth_condt :: 17158987\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04003\nType Strain :: Yes\nFunding Program :: DOE-GEBA 2009\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: caecum of chicken\nHost Name :: caecum of healthy chicken\nCell Shape :: Rod-shaped\nMotility :: Nonmotile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 37CC\nGram Staining :: …

sequence
subclass of: SO_0000155
sequence length: 19280
topology: circular
so has quality: SO_0000988
location: 1..19280
location: region:1-19280:1
RO_0002162: 667015

NC_015168
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00713589
type: BioSample
SIO_000068: biosample

1
title: The complete sequence of plasmid2 of Bacteroides salanitronis DSM 18170
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Teshima, H.
author: Misra, M.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Gronow, S.
author: Wellnitz, S.
author: Brambilla, E.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Teshima, H.
author: Misra, M.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Gronow, S.
author: Wellnitz, S.
author: Brambilla, E.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Submitted (17-FEB-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19280:1
position: 19280
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-19280:1:source
so part of: sequence
organism: Phocaeicola salanitronis DSM 18170
mol type: genomic DNA
strain: DSM 18170
isolation source: cecum
host: chicken
culture collection: DSM:18170
type material: type strain of Bacteroides salanitronis
plasmid: pBACSA02
country: Japan
collected by: isolated by P. T. N. Lan

667015
type: Taxonomy
SIO_000068: taxonomy

BACSA_RS18680
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18680
old locus tag: Bacsa_3705
so part of: sequence
location: 330..1019
location: region:330-1019:1
so has part: feature:330-1019:1:exon
subclass of: SO_0000010

position:330:1
position: 330
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1019:1
position: 1019
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:330-1019:1:exon

BACSA_RS18680
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18680
old locus tag: Bacsa_3705
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016274476.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: SprT-like domain-containing protein
translation: MITTIQFKTLDDLFQFYNNRLFEGKLPECIVNMSRKGGSYGFFAADRWKGDSMQKKIIHEISINPDFMDRPDKEWHSTLVHEMCHLWQHDFGNPSRNCYHNKQLASKMIQVGLMPTDTGEPGGKQTGQQMSHYVIEGGLFDKVFNALGADELENLRLKYRPLPASFRMLPVPVPPPGKSADTEKAEDKEGDWEKSGKRKRYTCGCGNHVWGKSGLWIRCEECNMLFLED
SIO_010081: BACSA_RS18680
subclass of: SO_0000673
so part of: BACSA_RS18680
location: 330..1019
location: region:330-1019:1
so has part: feature:330-1019:1:exon

WP_013622863.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:330-1019:1:exon

BACSA_RS18685
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18685
old locus tag: Bacsa_3706
so part of: sequence
location: 1178..1846
location: region:1178-1846:1
so has part: feature:1178-1846:1:exon
subclass of: SO_0000010

position:1178:1
position: 1178
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1846:1
position: 1846
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1178-1846:1:exon

BACSA_RS18685
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18685
old locus tag: Bacsa_3706
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005812682.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Abi family protein
translation: MKYKDYEAAFSQARLSRYLNACAGDKNKALILYRYNLKLCQKFYGVLGLFEVVFRNAVNEHYKRHFGDEDWIRTQIHAGGMLESSPQVSDVTRYISKLSDAGKYTHDRLVSSVSFGFWTYLFNKQPFRKGGQSLLAIFPHKTKGLGQRAIYNELMEIKSFRNRIAHHEPICFDMDGNKDVEFAQSNYNQILKYVGFLGYNKNELFYGLDVLPDRTIQKIRDL
SIO_010081: BACSA_RS18685
subclass of: SO_0000673
so part of: BACSA_RS18685
location: 1178..1846
location: region:1178-1846:1
so has part: feature:1178-1846:1:exon

WP_013622864.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1178-1846:1:exon

BACSA_RS18690
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18690
old locus tag: Bacsa_3707
so part of: sequence
location: complement(1886..2896)
location: region:1886-2896:-1
so has part: feature:1886-2896:-1:exon
subclass of: SO_0000010

position:1886:-1
position: 1886
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2896:-1
position: 2896
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1886-2896:-1:exon

BACSA_RS18690
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18690
old locus tag: Bacsa_3707
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007560598.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MERTKQKKNNGVVVRNKDQIQSYIMTTAKYDFNVYEKRILYRLVELAQCELQGLKFPEDCRKVEHTLWGNLIVTLPVTSILSNEDDNNYAKAKKALIALSQKYFEYEDEKTWEKINIIVLPKIQKYKSTFTFQIDPRIWSCCLDFTKGFRKYELVTAMNFKSVYTMRFYELMSGQKAKMSFSLNHLKEMFQVTDKYKLTADFIRKVIEPAKKELDECSPYTFEWTPQKEGKKIVGFCFYPIVQPQFRDNDLYRQEIQKQTNLSWDLNRQVLGYLKLSLGFSDKEIKNNRAVFIAAQFELPDIMGELAILKGKSRDKGNPKGYIINALKGKLKDKQG
SIO_010081: BACSA_RS18690
subclass of: SO_0000673
so part of: BACSA_RS18690
location: complement(1886..2896)
location: region:1886-2896:-1
so has part: feature:1886-2896:-1:exon

WP_013622865.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1886-2896:-1:exon

BACSA_RS18695
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18695
old locus tag: Bacsa_3708
so part of: sequence
location: complement(3317..4594)
location: region:3317-4594:-1
so has part: feature:3317-4594:-1:exon
subclass of: SO_0000010

position:3317:-1
position: 3317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4594:-1
position: 4594
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3317-4594:-1:exon

BACSA_RS18695
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18695
old locus tag: Bacsa_3708
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008670432.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MAKTSINVRPCNIGSAERHNLRSKELDYIRPELSHRNEQWSEMRIADVLEDIREKYRQHTGQSMQKKATPIREGVVVIEDGTTLRQLQDFAGRLEERFGIHTFQIYTHKDEGAGVWDGNAETWKPNYHAHMIFDWTDGETGRTRKLNKQDMAEMQTILAECLGMERGISSDRKHLSAIQYKNMVEAEKAAQIEKECRKMENERNVIEEKVKQAGEKLEDTQKKLKEAAAEIKVEKLKGAAADTGTALLKAGTTVIDATASLFNSGKVKRQEQEIAELKRENFELEMKSQNLQSNLRTANAQNEREREATRRAVRTGEERLKPITELFPCMENAKENIDELRTMGVGDNDIRLLLTGKEITYSGFLYDRERRKKHQVKDVKIDIAKSKSGNTTIWLNDFHFKEFFKQLWIRLQKILGLGTNKGVHM
SIO_010081: BACSA_RS18695
subclass of: SO_0000673
so part of: BACSA_RS18695
location: complement(3317..4594)
location: region:3317-4594:-1
so has part: feature:3317-4594:-1:exon

WP_013622866.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3317-4594:-1:exon

BACSA_RS18700
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18700
old locus tag: Bacsa_3709
so part of: sequence
location: 4986..5204
location: region:4986-5204:1
so has part: feature:4986-5204:1:exon
subclass of: SO_0000010

position:4986:1
position: 4986
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5204:1
position: 5204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4986-5204:1:exon

BACSA_RS18700
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18700
old locus tag: Bacsa_3709
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008782590.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MVDKNKNLKKMKEGDLVSVSAESTGLGRPMEAVIDKIETFLGQTLVTVSYTQPDENSGFGGCFVDAHITVKE
SIO_010081: BACSA_RS18700
subclass of: SO_0000673
so part of: BACSA_RS18700
location: 4986..5204
location: region:4986-5204:1
so has part: feature:4986-5204:1:exon

WP_013622867.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4986-5204:1:exon

BACSA_RS18705
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18705
old locus tag: Bacsa_3710
so part of: sequence
location: 5233..5565
location: region:5233-5565:1
so has part: feature:5233-5565:1:exon
subclass of: SO_0000010

position:5233:1
position: 5233
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5565:1
position: 5565
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5233-5565:1:exon

BACSA_RS18705
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18705
old locus tag: Bacsa_3710
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGNENVSKSKRGGKREGAGRKSRAGIHSVVMRVPASMEELVQAFIDIYSDWIREEGDKFAPHKTNETQRALFRQTVSGMLEFERERLVKRNKEDSDRRQLRLFENETKSE
SIO_010081: BACSA_RS18705
subclass of: SO_0000673
so part of: BACSA_RS18705
location: 5233..5565
location: region:5233-5565:1
so has part: feature:5233-5565:1:exon

WP_013622868.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5233-5565:1:exon

BACSA_RS18710
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18710
old locus tag: Bacsa_3711
so part of: sequence
location: 5707..6279
location: region:5707-6279:1
so has part: feature:5707-6279:1:exon
subclass of: SO_0000010

position:5707:1
position: 5707
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6279:1
position: 6279
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5707-6279:1:exon

BACSA_RS18710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18710
old locus tag: Bacsa_3711
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007569637.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MIIGYARVSKNDQHLDRQIDRLKKEGCERIYQEKVSGAGKIRPELDRMLDALREGDTVIVCELTRLGRSVKELFMLAERIGATGADLRSIKEPWLDTTTPQGKLLFAVFSGVSQFERDIIRERTLEGLESARARGRKGGRPKADAGRIELAMKLYDSRACPVSDILKASGISKATLYAYLKDRESTEKGT
SIO_010081: BACSA_RS18710
subclass of: SO_0000673
so part of: BACSA_RS18710
location: 5707..6279
location: region:5707-6279:1
so has part: feature:5707-6279:1:exon

WP_013622869.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5707-6279:1:exon

BACSA_RS18715
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18715
old locus tag: Bacsa_3712
so part of: sequence
location: complement(6319..7017)
location: region:6319-7017:-1
so has part: feature:6319-7017:-1:exon
subclass of: SO_0000010

position:6319:-1
position: 6319
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7017:-1
position: 7017
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6319-7017:-1:exon

BACSA_RS18715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18715
old locus tag: Bacsa_3712
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009859806.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: response regulator transcription factor
translation: MIKLLLVEDDVNLCYIVQAGLQDVIGGYEVITAGNGLEGLHAWEEHKPDIIISDIDMPEMDGFEMVRRIRETDGDTPILFASAMTSPKDVKHGYELGVNNYVKKPFVPEEIDAHIHAILKMKEGARSRSVEGHCRFSHYTLDTVHATLRDDNTGKIRVLTTTEAKILQLLAENKNEVIRREAILSRCWNTEDDFFASRSLDVFVTKLRKLFTDDPDVEIKTARGVGLMLVAK
SIO_010081: BACSA_RS18715
subclass of: SO_0000673
so part of: BACSA_RS18715
location: complement(6319..7017)
location: region:6319-7017:-1
so has part: feature:6319-7017:-1:exon

WP_013622870.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6319-7017:-1:exon

BACSA_RS20710
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS20710
so part of: sequence
location: complement(7014..7775)
location: region:7014-7775:-1
so has part: feature:7014-7775:-1:exon
subclass of: SO_0000010

position:7014:-1
position: 7014
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7775:-1
position: 7775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7014-7775:-1:exon

BACSA_RS20710
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS20710
inference: COORDINATES: protein motif:HMM:NF014567.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HAMP domain-containing sensor histidine kinase
translation: MIFVIGCIIYQVKIVSKQKKIFQIREDFSYAMVHDMKTPLTTIFTALSFLHSGRLDDKPETKEKFFNVAKEEADRLLTLTNKLLTISKLENKKMKMECEKIALEPMLVRLADKFKVKSHKPVSFEFDLQTPEIYADAEYIEEVFSNLIDNSIKYSKERVDIRVSSSKNDLYSIIKIYDNGLGISEKDQRSIFNKYERAAAGSRSNKKKASGFGLGLNFVQQVIEAHKGKIFVNSIEGEFTEFIIYLPLMVKEL
SIO_010081: BACSA_RS20710
subclass of: SO_0000673
so part of: BACSA_RS20710
location: complement(7014..7775)
location: region:7014-7775:-1
so has part: feature:7014-7775:-1:exon

WP_262501269.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7014-7775:-1:exon

BACSA_RS19610
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS19610
old locus tag: Bacsa_3715
so part of: sequence
location: 8674..8829
location: region:8674-8829:1
so has part: feature:8674-8829:1:exon
subclass of: SO_0000010

position:8674:1
position: 8674
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8829:1
position: 8829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8674-8829:1:exon

BACSA_RS19610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS19610
old locus tag: Bacsa_3715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: bacteriocin-type signal sequence
translation: MKKNELKTLEIEELKNVNGGVAPGPNGESCTEHGLPDFLKNTILLDILKHR
SIO_010081: BACSA_RS19610
subclass of: SO_0000673
so part of: BACSA_RS19610
location: 8674..8829
location: region:8674-8829:1
so has part: feature:8674-8829:1:exon

WP_013622873.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8674-8829:1:exon

BACSA_RS20360
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS20360
old locus tag: Bacsa_3717
so part of: sequence
location: 9022..9174
location: region:9022-9174:1
so has part: feature:9022-9174:1:exon
subclass of: SO_0000010

position:9022:1
position: 9022
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9174:1
position: 9174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9022-9174:1:exon

BACSA_RS20360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS20360
old locus tag: Bacsa_3717
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKNEMMRTMSLQEQQEINGGGALDILINLKSATPFPKCYLHKEKWTFDS
SIO_010081: BACSA_RS20360
subclass of: SO_0000673
so part of: BACSA_RS20360
location: 9022..9174
location: region:9022-9174:1
so has part: feature:9022-9174:1:exon

WP_013622875.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9022-9174:1:exon

BACSA_RS18730
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18730
old locus tag: Bacsa_3718
pseudo: true
so part of: sequence
location: complement(9279..10566)
location: region:9279-10566:-1
so has part: feature:9279-10566:-1:exon
subclass of: SO_0000010

position:9279:-1
position: 9279
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10566:-1
position: 10566
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9279-10566:-1:exon

BACSA_RS18730
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18730
old locus tag: Bacsa_3718
inference: COORDINATES: similar to AA sequence:RefSeq:WP_076611159.1
note: frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: IS1380-like element IS615 family transposase
SIO_010081: BACSA_RS18730
subclass of: SO_0000673
so part of: BACSA_RS18730
location: complement(9279..10566)
location: region:9279-10566:-1
so has part: feature:9279-10566:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:9279-10566:-1:exon

BACSA_RS20365
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS20365
old locus tag: Bacsa_3719
so part of: sequence
location: 10857..11012
location: region:10857-11012:1
so has part: feature:10857-11012:1:exon
subclass of: SO_0000010

position:10857:1
position: 10857
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11012:1
position: 11012
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10857-11012:1:exon

BACSA_RS20365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS20365
old locus tag: Bacsa_3719
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKENVFMVELNQKEMSEVNGGGIWTEVFKALIASYEMASDFKEGWDSVPDL
SIO_010081: BACSA_RS20365
subclass of: SO_0000673
so part of: BACSA_RS20365
location: 10857..11012
location: region:10857-11012:1
so has part: feature:10857-11012:1:exon

WP_013622876.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10857-11012:1:exon

BACSA_RS20775
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS20775
old locus tag: Bacsa_3720
so part of: sequence
location: 11062..11196
location: region:11062-11196:1
so has part: feature:11062-11196:1:exon
subclass of: SO_0000010

position:11062:1
position: 11062
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11196:1
position: 11196
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11062-11196:1:exon

BACSA_RS20775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS20775
old locus tag: Bacsa_3720
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMKNESYVELSKKENSEIYGGKSFMTTIGELCHKGWNEVKSWFR
SIO_010081: BACSA_RS20775
subclass of: SO_0000673
so part of: BACSA_RS20775
location: 11062..11196
location: region:11062-11196:1
so has part: feature:11062-11196:1:exon

WP_013622877.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11062-11196:1:exon

BACSA_RS18735
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18735
old locus tag: Bacsa_3721
so part of: sequence
location: 11282..12133
location: region:11282-12133:1
so has part: feature:11282-12133:1:exon
subclass of: SO_0000010

position:11282:1
position: 11282
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12133:1
position: 12133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11282-12133:1:exon

BACSA_RS18735
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18735
old locus tag: Bacsa_3721
inference: COORDINATES: protein motif:HMM:NF014566.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II CAAX endopeptidase family protein
translation: MKKNRVPLWADLLIFLVFLFIASLIGVESTLSLIGSTEFESVKYFFLSTIISSIIVLLAILLQHYVIDKRPLSELGLCTTHFVWKHSSMVVVWTFIVFVIGFLICLLSGDVSIVSVYWNLKDLSLSLLMFTFGAFYEEIIMRGYLLTRLCRSGLNVWLCLIITAIVFSAMHLANPNVNVCSVVNLFLFGILDGCIFLYTKSLWVSVIAHCAWNWIQGSILGFKVSGCEFFQPIINLDMPSYNLVNGGLFGFEGSIICTILLIPFIIIFINLLSKSIAKDEFQH
SIO_010081: BACSA_RS18735
subclass of: SO_0000673
so part of: BACSA_RS18735
location: 11282..12133
location: region:11282-12133:1
so has part: feature:11282-12133:1:exon

WP_169311471.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11282-12133:1:exon

BACSA_RS18740
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18740
old locus tag: Bacsa_3722
so part of: sequence
location: 12234..13403
location: region:12234-13403:1
so has part: feature:12234-13403:1:exon
subclass of: SO_0000010

position:12234:1
position: 12234
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13403:1
position: 13403
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12234-13403:1:exon

BACSA_RS18740
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18740
old locus tag: Bacsa_3722
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007479745.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: HlyD family efflux transporter periplasmic adaptor subunit
translation: MLLPNEWIENSIETYIYQHTTKSQVIYWVVLLAVTVTLVALPFVYVDISVQGSGVVRPVAEKAEITSSITEIVDSVFVKEGDQVNKGDVILRFRTNNSDYKINYQTSRLNDCSAQLADLAFLAKGERPERFSSPVRQQEYAYFIRKKQELETALAQAEKEYTRNRTLFEKKVISEEEYDSYYFKLKSQQNELASLVQSQLSTWQADQNTYRNTYNEMNSSLNQEIKDKDMYIVRSPVDGTVDQFSGVYRGSSIQAGQSLAVISPDSTLCLEVYVTPRNIGFMSVGMPVNVQVESFNYNEWGTIPGRVKDISSDFLTDSQGNSFYKVKCEMERDYLQLKNGRVGKLKKGMTVNAHFMVTRRSLFDLLYQKMDGWVNPKQYENETMVAKLN
SIO_010081: BACSA_RS18740
subclass of: SO_0000673
so part of: BACSA_RS18740
location: 12234..13403
location: region:12234-13403:1
so has part: feature:12234-13403:1:exon

WP_013622879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12234-13403:1:exon

BACSA_RS18745
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18745
old locus tag: Bacsa_3723
so part of: sequence
location: 13432..15597
location: region:13432-15597:1
so has part: feature:13432-15597:1:exon
subclass of: SO_0000010

position:13432:1
position: 13432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15597:1
position: 15597
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13432-15597:1:exon

BACSA_RS18745
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18745
old locus tag: Bacsa_3723
inference: COORDINATES: similar to AA sequence:RefSeq:WP_007479746.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: peptidase domain-containing ABC transporter
translation: MYKKGIKIKQHDITDCGAACLASVCAHYGLQFPVARIRQYAFTDQKGTNVLGLIEAANRLGLSAKGVRAQFEALAIVPKPTIAHVIVHEHLQHFVVIYKVEKGHITYMDPGDGRMHKVTDEEFKRMWTGVLVLMEPEETFKKGNMKTSMTRKFFSLLAPHKSVMMQAVFGALVYSILGLSTSVYVGKITDYVLVDGNINLLNLMGVVMIVILILRTFIGAMKSILALKTGQRIDAALILGYYKHLLTLPQQFFDTMRVGEIISRVNDAVKIRNFINNVSLDLVVNMMILLFSVGLMFVYSWELALVTLASAPLFLLIFWGFNRLNRKYQRGIMESSADLEAQLVESINSISTIKRFGIEDFANLKTETRFVHLLKNTFRSIYGAIMAQGGIQFVSTAITIAVLWMGSVLVIDKELTPGTLMVFYSLISYVISPIGSLISSNQTIQDALIAADRLFQIMDLEREQDDSQKIELEPDMIGDITFENVSFRYGSRKEVFKGLNLKIEKGKTTAVIGESGSGKTTLISLLQHIYPIQSGQIRIGEYDIAQISNRSLRRRVGTVPQQIELFAGTIIENIAVGDLQPDMKRIVDLVEQLGLKDFIERLPNGYMTYIGEHGASLSGGERQRIAIARALYKEPEILIFDEATSSLDSISEKHVKQTLDALAKRGKTVIVIAHRLSTVKNADRIVVLDKGQVAETGTHKELFNSGGIYSRLWNEQFDQLD
SIO_010081: BACSA_RS18745
subclass of: SO_0000673
so part of: BACSA_RS18745
location: 13432..15597
location: region:13432-15597:1
so has part: feature:13432-15597:1:exon

WP_013622880.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13432-15597:1:exon

BACSA_RS18750
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18750
old locus tag: Bacsa_3724
so part of: sequence
location: 15738..17063
location: region:15738-17063:1
so has part: feature:15738-17063:1:exon
subclass of: SO_0000010

position:15738:1
position: 15738
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17063:1
position: 17063
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15738-17063:1:exon

BACSA_RS18750
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18750
old locus tag: Bacsa_3724
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008672361.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TolC family protein
translation: MKGLVSILAFAGLLACQGNVQAQVKKWTLAECIDYAVTHNIEVKQSDNQIQNLKVQRNTLRNSFLPDLNAGASQNFTFGRSLNQNNTYEDSNIQNSSFSVTTEIPIFAGFKRTASIAQNRFDLLAAEANRELIENNLSLNVAGAYFQILLNKEIYRIALEQIQLTKEQETCTQLLIENGKAAESQLYDVRAQLADDELTATEARNSLRLAYLDLAQLMELKGHEQFDIDSLGGEIAIADTLSPVSIYQSALTCMPQIRQAYYTLQSKTKGIRIAKSGYYPTLSFAAGINTNYYDNGSGLGETFQRQLNNNMQKSLCFTISIPLFDRFSTRNQVRAARIDEDNARLSLENEKKQLYKDIEQAYMDAISAFEKYRSTTKAVIANQEAHRYALEKYAAGKSTVFEYNEIKMKLADALSQQSQAKYTYLLKDRILAFYSCFSLTD
SIO_010081: BACSA_RS18750
subclass of: SO_0000673
so part of: BACSA_RS18750
location: 15738..17063
location: region:15738-17063:1
so has part: feature:15738-17063:1:exon

WP_013622881.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15738-17063:1:exon

BACSA_RS18755
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18755
old locus tag: Bacsa_3725
so part of: sequence
location: 17077..17286
location: region:17077-17286:1
so has part: feature:17077-17286:1:exon
subclass of: SO_0000010

position:17077:1
position: 17077
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17286:1
position: 17286
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17077-17286:1:exon

BACSA_RS18755
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18755
old locus tag: Bacsa_3725
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002196439.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix transcriptional regulator
translation: MHSIKINLDVVLNKRGMTLNELSEKTGVSIANLSNLKNNRVVSVRFSTLGRICKALECQPADILKYEDD
SIO_010081: BACSA_RS18755
subclass of: SO_0000673
so part of: BACSA_RS18755
location: 17077..17286
location: region:17077-17286:1
so has part: feature:17077-17286:1:exon

WP_013622882.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17077-17286:1:exon

BACSA_RS18760
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18760
old locus tag: Bacsa_3726
so part of: sequence
location: 17386..17877
location: region:17386-17877:1
so has part: feature:17386-17877:1:exon
subclass of: SO_0000010

position:17386:1
position: 17386
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:17877:1
position: 17877
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17386-17877:1:exon

BACSA_RS18760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18760
old locus tag: Bacsa_3726
inference: COORDINATES: protein motif:HMM:NF024332.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3836 domain-containing protein
translation: MEIITATTIFLASLNVYGECGFAYNAETSEDGIVTAKAVYHKSVCGKYLSPTLKYNYVYDGEQRLAQKEVLKWNCVTEKWDKSHILNYMYDENGYTIEYAVWDSGKQEYADVVAKQTYHESIDGALYIALYRWDDSGNDWVKQNDMVAMNLSGELLTSFEFEL
SIO_010081: BACSA_RS18760
subclass of: SO_0000673
so part of: BACSA_RS18760
location: 17386..17877
location: region:17386-17877:1
so has part: feature:17386-17877:1:exon

WP_013622883.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17386-17877:1:exon

BACSA_RS20370
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS20370
old locus tag: Bacsa_3727
so part of: sequence
location: 17908..18048
location: region:17908-18048:1
so has part: feature:17908-18048:1:exon
subclass of: SO_0000010

position:17908:1
position: 17908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18048:1
position: 18048
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17908-18048:1:exon

BACSA_RS20370
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS20370
old locus tag: Bacsa_3727
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEKKNLERKVRLIAIEEMRNVNGGANIVAGDEFSQLKLPIGMRKKF
SIO_010081: BACSA_RS20370
subclass of: SO_0000673
so part of: BACSA_RS20370
location: 17908..18048
location: region:17908-18048:1
so has part: feature:17908-18048:1:exon

WP_013622884.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17908-18048:1:exon

BACSA_RS18765
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18765
old locus tag: Bacsa_3728
so part of: sequence
location: complement(18166..18429)
location: region:18166-18429:-1
so has part: feature:18166-18429:-1:exon
subclass of: SO_0000010

position:18166:-1
position: 18166
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18429:-1
position: 18429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18166-18429:-1:exon

BACSA_RS18765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18765
old locus tag: Bacsa_3728
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016274484.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MENKRNNLRENMKAGLSSLVRPTTVAVKQSDLRTQEKPKYKTCNYITDPSRHNRLKRYATDNGMTLLQAFNEAIDLYLSDKGERYAP
SIO_010081: BACSA_RS18765
subclass of: SO_0000673
so part of: BACSA_RS18765
location: complement(18166..18429)
location: region:18166-18429:-1
so has part: feature:18166-18429:-1:exon

WP_013622885.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18166-18429:-1:exon

BACSA_RS18770
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18770
old locus tag: Bacsa_3729
so part of: sequence
location: complement(18439..19200)
location: region:18439-19200:-1
so has part: feature:18439-19200:-1:exon
subclass of: SO_0000010

position:18439:-1
position: 18439
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19200:-1
position: 19200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18439-19200:-1:exon

BACSA_RS18770
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18770
old locus tag: Bacsa_3729
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016274483.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ParA family protein
translation: MAKIVSIINHKGGVGKTATAANLGAALQIRGKRVLLIDMDAQSNLTDCLGVSTELDDTIYQAMRGYIPLPIVKNEDGLDIVPSCLDMSAIEMEIMQKYAREQILHKLISQVQEQYDYILIDCPPSLSILTINAMTASDCIIIPVEAEYLAMRGMGRLTNVIHEVKNNLNPKLRISGILITKYDRRKNFNQDIQEIIRDTFQGDVFTTTIRTNVAIGEATAAKHDIFHYAPKSSGAEDYASFCDEFLKKESTFN
SIO_010081: BACSA_RS18770
subclass of: SO_0000673
so part of: BACSA_RS18770
location: complement(18439..19200)
location: region:18439-19200:-1
so has part: feature:18439-19200:-1:exon

WP_013622886.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18439-19200:-1:exon