Phocaeicola salanitronis DSM 18170 plasmid pBACSA03, complete sequence.
type: Entry
definition: Phocaeicola salanitronis DSM 18170 plasmid pBACSA03, complete sequence.
sequence version: NC_015166.1
sequence date: 2022-10-06
sequence: sequence
division: CON
label: NC_015166.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00713589
keyword: GSC:MIGS:2.1
keyword: RefSeq
source: Phocaeicola salanitronis DSM 18170
organism: Phocaeicola salanitronis DSM 18170
taxonomy: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae; Phocaeicola.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP002533.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4087335\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Bacteroides salanitronis BL78, DSM 18170\ncollection_date :: isolated by P. T. N. Lan\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Japan\nenvironment :: Host\nnum_replicons :: 4\nref_biomaterial :: DSM 18170, CCUG 54637, JCM 13657\nbiotic_relationship :: Free living\ntrophic_level :: Missing\nrel_to_oxygen :: Anaerobe\nisol_growth_condt :: 17158987\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3 (pre-release)\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi04003\nType Strain :: Yes\nFunding Program :: DOE-GEBA 2009\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: caecum of chicken\nHost Name :: caecum of healthy chicken\nCell Shape :: Rod-shaped\nMotility :: Nonmotile\nSporulation :: Nonsporulating\nTemperature Range :: Mesophile\nTemperature Optimum :: 37CC\nGram Staining :: …

sequence
subclass of: SO_0000155
sequence length: 6277
topology: circular
so has quality: SO_0000988
location: 1..6277
location: region:1-6277:1
RO_0002162: 667015

NC_015166
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00713589
type: BioSample
SIO_000068: biosample

1
title: The complete sequence of plasmid3 of Bacteroides salanitronis DSM 18170
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Teshima, H.
author: Misra, M.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Gronow, S.
author: Wellnitz, S.
author: Brambilla, E.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Goodwin, L.
author: Pitluck, S.
author: Kyrpides, N.
author: Mavromatis, K.
author: Ivanova, N.
author: Mikhailova, N.
author: Teshima, H.
author: Misra, M.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Markowitz, V.
author: Cheng, J.-F.
author: Hugenholtz, P.
author: Woyke, T.
author: Wu, D.
author: Gronow, S.
author: Wellnitz, S.
author: Brambilla, E.
author: Klenk, H.-P.
author: Eisen, J.A.
journal: Submitted (17-FEB-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6277:1
position: 6277
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-6277:1:source
so part of: sequence
organism: Phocaeicola salanitronis DSM 18170
mol type: genomic DNA
strain: DSM 18170
isolation source: cecum
host: chicken
culture collection: DSM:18170
type material: type strain of Bacteroides salanitronis
plasmid: pBACSA03
country: Japan
collected by: isolated by P. T. N. Lan

667015
type: Taxonomy
SIO_000068: taxonomy

BACSA_RS18775
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18775
old locus tag: Bacsa_3730
so part of: sequence
location: complement(108..1007)
location: region:108-1007:-1
so has part: feature:108-1007:-1:exon
subclass of: SO_0000010

position:108:-1
position: 108
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1007:-1
position: 1007
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:108-1007:-1:exon

BACSA_RS18775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18775
old locus tag: Bacsa_3730
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005812749.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5712 family protein
translation: MNIKIQGGGSGTYANTGSCTEVTTYLQHEDLERMKNGREVQPFFNNSRDYISAQEVTFKIDNNKAKLSRNDAKFYVITVSPSSRELEKMGKTEKEQAEAMRRYVRDDVMQHYAEGFGKGLNKEDIEYYGKIHFERKGADRYDMHAHIIVSRKDRSNTRKLSPKTNHTGKKNCGNVKGGFDRTDFFRKCETSFDKRTGYDRAPEQTFDYLNTMKNGTPKEIFQKKEWAERVNHERLEKMKAEWSRDLQEQHQEQGREEIQQQGNNISQVPEINQASQRKKQQEEELNQPRKRSRGFGMGM
SIO_010081: BACSA_RS18775
subclass of: SO_0000673
so part of: BACSA_RS18775
location: complement(108..1007)
location: region:108-1007:-1
so has part: feature:108-1007:-1:exon

WP_013619579.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:108-1007:-1:exon

BACSA_RS18780
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18780
old locus tag: Bacsa_3731
so part of: sequence
location: complement(1004..1606)
location: region:1004-1606:-1
so has part: feature:1004-1606:-1:exon
subclass of: SO_0000010

position:1004:-1
position: 1004
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1606:-1
position: 1606
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1004-1606:-1:exon

BACSA_RS18780
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18780
old locus tag: Bacsa_3731
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013619580.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BfmA/BtgA family mobilization protein
translation: MEKDSKTTVAVERTTFAKLDRLAKANSVSKMEYITHAINYFEKYGINPVEHESPAQEMQRLIKRMDQVFAFLKKQETDLVRPACEALAGASTQITISLSSLLSEEKFRRFLKDNKELLAGIINSSDNNGRAIGRAEKAVRDADSTIRKNQDIIFKRIEASETAQLKAMQHIVSFLDAKGKTGLLDDINKVYKKEKERRGL
SIO_010081: BACSA_RS18780
subclass of: SO_0000673
so part of: BACSA_RS18780
location: complement(1004..1606)
location: region:1004-1606:-1
so has part: feature:1004-1606:-1:exon

WP_013619580.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1004-1606:-1:exon

BACSA_RS18785
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18785
old locus tag: Bacsa_3732
so part of: sequence
location: complement(2097..2366)
location: region:2097-2366:-1
so has part: feature:2097-2366:-1:exon
subclass of: SO_0000010

position:2097:-1
position: 2097
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2366:-1
position: 2366
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2097-2366:-1:exon

BACSA_RS18785
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18785
old locus tag: Bacsa_3732
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008671563.1
GO process: GO:0008219 - cell death [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Txe/YoeB family addiction module toxin
translation: MYEIEFSKEAVKHVLLMRKSSPQLFRKLEKLLDELREHPYTGTGHPEQLRYLEGVWSRQLDKKNRIRYMVNETTVIVFIISAWGHYDDK
SIO_010081: BACSA_RS18785
subclass of: SO_0000673
so part of: BACSA_RS18785
location: complement(2097..2366)
location: region:2097-2366:-1
so has part: feature:2097-2366:-1:exon

WP_032536520.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2097-2366:-1:exon

BACSA_RS20715
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS20715
so part of: sequence
location: complement(2359..2787)
location: region:2359-2787:-1
so has part: feature:2359-2787:-1:exon
subclass of: SO_0000010

position:2359:-1
position: 2359
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2787:-1
position: 2787
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2359-2787:-1:exon

BACSA_RS20715
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS20715
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: prevent-host-death protein
translation: MKNEFLNVCESKAKASAAFFEERIFRACTQISTQNFCFIDFYPYFCGENQYIRTMQIVTTREFRANQKKYFEMAETETILVSRRNAAPIMVCAVREGDFPSKEELAAIQRGIEDIRNGNTFRMAKNESLDDFLNRIEGEGNV
SIO_010081: BACSA_RS20715
subclass of: SO_0000673
so part of: BACSA_RS20715
location: complement(2359..2787)
location: region:2359-2787:-1
so has part: feature:2359-2787:-1:exon

WP_225231023.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2359-2787:-1:exon

BACSA_RS18795
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18795
old locus tag: Bacsa_3734
so part of: sequence
location: 3078..4058
location: region:3078-4058:1
so has part: feature:3078-4058:1:exon
subclass of: SO_0000010

position:3078:1
position: 3078
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4058:1
position: 4058
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3078-4058:1:exon

BACSA_RS18795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18795
old locus tag: Bacsa_3734
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005812759.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication initiation protein
translation: MAIVNKDLIQSYIMTTAKYDFNVYEKRIIYRLVEMAQGELQGIKFADNCQKIEHDLFSCVNITMPIACLLNGEDDKNYARVKEALQSLQRKIFEYEDDEIWQSISIIALPYIRKRSSVLSFQVHPRVWDCILDFSKGFRKYELKAAMSFKSQFSMRFYELLSNQKTPLIYSIEQLKEMFCVTDKYERINDFIRYVVDAAKKELDEISPYTFEYTPLKTGRKITAIKFYPVYQPEHRDSDLEKHDLQKQTALSWSLAPEIRSYLKNSIEFSDKEIKNNLDLFISAQTLLPDFLNELAILKGKSREKKNPKGYIINAIKGKIKDRKKL
SIO_010081: BACSA_RS18795
subclass of: SO_0000673
so part of: BACSA_RS18795
location: 3078..4058
location: region:3078-4058:1
so has part: feature:3078-4058:1:exon

WP_013619581.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3078-4058:1:exon

BACSA_RS18800
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18800
old locus tag: Bacsa_3735
so part of: sequence
location: 4088..4288
location: region:4088-4288:1
so has part: feature:4088-4288:1:exon
subclass of: SO_0000010

position:4088:1
position: 4088
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4288:1
position: 4288
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4088-4288:1:exon

BACSA_RS18800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18800
old locus tag: Bacsa_3735
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005812761.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKEGDLILVSAEATGLGKPMEAIIDKIETFMGQTLVTVTYTQPDALSGFGGCFVDSHITLSEKKAK
SIO_010081: BACSA_RS18800
subclass of: SO_0000673
so part of: BACSA_RS18800
location: 4088..4288
location: region:4088-4288:1
so has part: feature:4088-4288:1:exon

WP_013619582.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4088-4288:1:exon

BACSA_RS18805
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18805
old locus tag: Bacsa_3736
so part of: sequence
location: 4402..4944
location: region:4402-4944:1
so has part: feature:4402-4944:1:exon
subclass of: SO_0000010

position:4402:1
position: 4402
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4944:1
position: 4944
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4402-4944:1:exon

BACSA_RS18805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18805
old locus tag: Bacsa_3736
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013619583.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: BfmA/BtgA family mobilization protein
translation: MTDKATIQPKSKPEKTTISISGETSERLEIYCRANGILRKEFVSLALEYFERTGFDLKSNALDYSPLEKIIGELNEVKATMQTSNEGTEAIRQLLQAVREQTAKQLPAPELIAQATEAKAKAESLATERAKDLQLLQEENNRLRNEIKVLQEYKEKAHRELCRVRDEQKTFGKIKVNTEL
SIO_010081: BACSA_RS18805
subclass of: SO_0000673
so part of: BACSA_RS18805
location: 4402..4944
location: region:4402-4944:1
so has part: feature:4402-4944:1:exon

WP_013619583.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4402-4944:1:exon

BACSA_RS18810
type: Gene
subclass of: SO_0000704
RO_0002162: 667015
locus tag: BACSA_RS18810
old locus tag: Bacsa_3737
so part of: sequence
location: complement(5220..6206)
location: region:5220-6206:-1
so has part: feature:5220-6206:-1:exon
subclass of: SO_0000010

position:5220:-1
position: 5220
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6206:-1
position: 6206
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5220-6206:-1:exon

BACSA_RS18810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 667015
locus tag: BACSA_RS18810
old locus tag: Bacsa_3737
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004295351.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKKLFYSLMLCSFFVACSNEDDIVMQDDQSFSNEEVLTRSASMRRSLTPQEADMLKKAFPNLKTDNVTVTGEATYTYNCIAYSMGITSKWINPEELYNDFINQYKNAKSLYGASSNYEQTSTQGSGADVDGWGLNTYKMTHGSVIYSGNTWESKLGPNIRITHGRTELNGSEYGSILVSFVKQNSKISDLKEVAEEVSKEDIVLSDLEKNKVLERSKKVDSEIVSKFESLIAAWKNEINTNPKTMFSSSTLDYKQLPQFKSLQEMGSVIIPLIMEKLLDEENFFMLPLYDTLQLDSNLKIVYNKNDRKCLEGEQNRARRTVRMWVNSL
SIO_010081: BACSA_RS18810
subclass of: SO_0000673
so part of: BACSA_RS18810
location: complement(5220..6206)
location: region:5220-6206:-1
so has part: feature:5220-6206:-1:exon

WP_013619584.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5220-6206:-1:exon