Daphnia pulex mitochondrion, complete genome.
type: Entry
definition: Daphnia pulex mitochondrion, complete genome.
sequence version: NC_000844.1
sequence date: 2023-04-03
sequence: sequence
division: INV
label: NC_000844.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA927338
keyword: RefSeq
source: mitochondrion Daphnia pulex (water flea)
organism: Daphnia pulex
taxonomy: Eukaryota; Metazoa; Ecdysozoa; Arthropoda; Crustacea; Branchiopoda; Diplostraca; Cladocera; Anomopoda; Daphniidae; Daphnia.
reference: 1
references: 10375625
reference: 2
reference: 3
comment: PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence was derived from AF117817.\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000819
sequence length: 15333
topology: circular
so has quality: SO_0000988
location: 1..15333
location: region:1-15333:1
RO_0002162: 6669

NC_000844
type: RefSeq
SIO_000068: refseq

PRJNA927338
type: BioProject
SIO_000068: bioproject

1
title: The complete sequence of the mitochondrial genome of Daphnia pulex (Cladocera: Crustacea)
author: Crease, T.J.
journal: Gene 233 (1-2), 89-99 (1999)
pubmed: 10375625

10375625
type: PubMed
SIO_000068: pubmed

2
title: Direct Submission
journal: Submitted (08-SEP-1999) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA

3
title: Direct Submission
author: Crease, T.J.
journal: Submitted (04-JAN-1999) Zoology, University of Guelph, 50 Stone Road, Guelph, Ont N1G 2W1, Canada

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15333:1
position: 15333
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15333:1:source
so part of: sequence
organism: Daphnia pulex
organelle: mitochondrion
mol type: genomic DNA
common: water flea

6669
type: Taxonomy
SIO_000068: taxonomy

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Ile
so part of: sequence
location: 1..64
location: region:1-64:1
so has part: feature:1-64:1:region

position:64:1
position: 64
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-64:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Gln
so part of: sequence
location: complement(66..133)
location: region:66-133:-1
so has part: feature:66-133:-1:region

position:66:-1
position: 66
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:133:-1
position: 133
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:66-133:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Met
so part of: sequence
location: 134..197
location: region:134-197:1
so has part: feature:134-197:1:region

position:134:1
position: 134
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:197:1
position: 197
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:134-197:1:region

ND2
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
gene: ND2
so part of: sequence
location: 198..1187
location: region:198-1187:1
so has part: feature:198-1187:1:exon
subclass of: SO_0000010

808487
type: Gene
SIO_000068: ncbigene

position:198:1
position: 198
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1187:1
position: 1187
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:198-1187:1:exon

ND2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
gene: ND2
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 2
translation: MWLSPSLLLMIISIVTSICLVISSPSLFISWIGLELNTLAFLPLLLSKKSKLASEASIKYFLTQTLASVLILVGGLWFLAPWGGLATLTLLLGLSIKLGAAPFHSWVLSIAEASGWVPLFALLTIQKINPLLMLWMFCHLSMPFFYVVVLSSLIMGGLAGLTQTSVRSILTFSSINHVGWLMTALSFSLSVGAYYFLIYLTTLLCSILIFHMFNVSHINQLPLLSFKPSNQMLLFFALLSLGGLPPFLGFLPKWMILQLTVSYSLLLVGGVMISMSLVVLFFYLRLMFSAFMMGGVNLTTLSSDPLPFPVYFVALFSITGGGLSMIYFL
SIO_010081: ND2
subclass of: SO_0000673
so part of: ND2
location: 198..1187
location: region:198-1187:1
so has part: feature:198-1187:1:exon

NP_008621.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:198-1187:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Trp
so part of: sequence
location: 1186..1251
location: region:1186-1251:1
so has part: feature:1186-1251:1:region

position:1186:1
position: 1186
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1251:1
position: 1251
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1186-1251:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Cys
so part of: sequence
location: complement(1253..1316)
location: region:1253-1316:-1
so has part: feature:1253-1316:-1:region

position:1253:-1
position: 1253
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1316:-1
position: 1316
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1253-1316:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Tyr
so part of: sequence
location: complement(1328..1391)
location: region:1328-1391:-1
so has part: feature:1328-1391:-1:region

position:1328:-1
position: 1328
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:1391:-1
position: 1391
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1328-1391:-1:region

COX1
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
alternative label: COI
gene: COX1
gene synonym: COI
so part of: sequence
location: 1397..2934
location: region:1397-2934:1
so has part: feature:1397-2934:1:exon
subclass of: SO_0000010

808488
type: Gene
SIO_000068: ncbigene

position:1397:1
position: 1397
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2934:1
position: 2934
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1397-2934:1:exon

COX1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
alternative label: COI
gene: COX1
gene synonym: COI
note: mechanism underlying reading frame shift after first codon uncertain; TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:2934,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit I
translation: MLRRWLFSTNHKDIGTLYFIFGIWSGMVGTALSLLIRAELGQSGSLIGDDQIYNVIVTAHAFVMIFFMVMPIMIGGFGNWLVPLMLGAPDMAFPRLNNLSFWFLPPALTLLLVGGAVESGAGTGWTVYPPLSAGIAHAGASVDLSIFSLHLAGISSILGAVNFITTIINMRSAGMSLDRIPLFVWAVGITALLLLLSLPVLAGAITMLLTDRNLNTSFFDPAGGGDPILYQHLFWFFGHPEVYILILPGFGMISHIISHESGKKEAFGTLGMIYAMLAIGVLGFVVWAHHMFTVGMDVDTRAYFTAATMIIAVPTGIKIFSWLGTLHGTQLVFTPSLLWAAGFVFLFTVGGLTGVVLANSSIDIILHDTYYVVAHFHYVLSMGAVFAIFAGVAHWFPLFTGLTLQARWLKIHFFTMFVGVNLTFFPQHFLGLAGMPRRYSDYPDAYMTWNVISSVGSVISFVATLGFIFIIWESFVSLRPTLFSTHLSTSIEWQHSFPPAEHSYNELVFISQ
SIO_010081: COX1
subclass of: SO_0000673
so part of: COX1
location: join(1397..1399,1401..2934)
location: region:1397-2934:1
so has part: feature:1397-1399:1:exon
so has part: feature:1401-2934:1:exon

NP_008622.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1397-1399:1:exon

position:1399:1
position: 1399
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1401-2934:1:exon

position:1401:1
position: 1401
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Leu
codon recognized: UUR
so part of: sequence
location: 2935..3002
location: region:2935-3002:1
so has part: feature:2935-3002:1:region

position:2935:1
position: 2935
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3002:1
position: 3002
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2935-3002:1:region

COX2
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
alternative label: COII
gene: COX2
gene synonym: COII
so part of: sequence
location: 3004..3682
location: region:3004-3682:1
so has part: feature:3004-3682:1:exon
subclass of: SO_0000010

808489
type: Gene
SIO_000068: ncbigene

position:3004:1
position: 3004
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3682:1
position: 3682
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3004-3682:1:exon

COX2
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
alternative label: COII
gene: COX2
gene synonym: COII
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:3682,aa:TERM)
transl table: 5
product: cytochrome c oxidase subunit II
translation: MATWAQIGFQNSASPLMEQLIFFHDHALLILILITTLVGYFMLSLVTNKFVNRYLLDGQMIEIIWTVLPAVILIILALPSLRLLYLIDETTEPSITLKTVGHQWYWSYEYSDFKDIEFDSYMMPSNDLEKGQFRLLEVDNRVILPYLTQVRLLVTAGDVIHSWTIPSLGIKADAVPGRLNQLNVFFNRPGVFYGQCSEICGANHSFMPITVEAVNPADFLSWVKSF
SIO_010081: COX2
subclass of: SO_0000673
so part of: COX2
location: 3004..3682
location: region:3004-3682:1
so has part: feature:3004-3682:1:exon

NP_008623.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3004-3682:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Lys
so part of: sequence
location: 3683..3752
location: region:3683-3752:1
so has part: feature:3683-3752:1:region

position:3683:1
position: 3683
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3752:1
position: 3752
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3683-3752:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Asp
so part of: sequence
location: 3757..3821
location: region:3757-3821:1
so has part: feature:3757-3821:1:region

position:3757:1
position: 3757
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3821:1
position: 3821
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3757-3821:1:region

ATP8
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
alternative label: ATPase8
gene: ATP8
gene synonym: ATPase8
so part of: sequence
location: 3821..3982
location: region:3821-3982:1
so has part: feature:3821-3982:1:exon
subclass of: SO_0000010

808490
type: Gene
SIO_000068: ncbigene

position:3982:1
position: 3982
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3821-3982:1:exon

ATP8
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
alternative label: ATPase8
gene: ATP8
gene synonym: ATPase8
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 8
translation: MPQIWPMNWVILFWIFALTFVMFMTFLYFTNFSPKISLEKSHQTTLSHLDWKW
SIO_010081: ATP8
subclass of: SO_0000673
so part of: ATP8
location: 3821..3982
location: region:3821-3982:1
so has part: feature:3821-3982:1:exon

NP_008624.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3821-3982:1:exon

ATP6
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
alternative label: ATPase6
gene: ATP6
gene synonym: ATPase6
so part of: sequence
location: 3976..4650
location: region:3976-4650:1
so has part: feature:3976-4650:1:exon
subclass of: SO_0000010

808497
type: Gene
SIO_000068: ncbigene

position:3976:1
position: 3976
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4650:1
position: 4650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3976-4650:1:exon

ATP6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
alternative label: ATPase6
gene: ATP6
gene synonym: ATPase6
codon start: 1
transl table: 5
product: ATP synthase F0 subunit 6
translation: MMANLFSIFDPSSMLTLPLNWLAVFVGLFALPWGFWISTNRAAKFFTLVSDQLHSEFKTLVGVGGAQGHTLIFISLFLFILFNNFFGLAPYVFTASSHLAMTLALAFPLWLAFILYGWLSHTTHMLAHLVPLGTPPVLMPFMVLIETVSNVIRPGTLAVRLAANMIAGHLLLVLLGNQGPSLSSSLLSILLVTQILLLTLESAVAIIQSYVFAVLATLYSSEVV
SIO_010081: ATP6
subclass of: SO_0000673
so part of: ATP6
location: 3976..4650
location: region:3976-4650:1
so has part: feature:3976-4650:1:exon

NP_008625.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3976-4650:1:exon

COX3
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
alternative label: COIII
gene: COX3
gene synonym: COIII
so part of: sequence
location: 4650..5438
location: region:4650-5438:1
so has part: feature:4650-5438:1:exon
subclass of: SO_0000010

808491
type: Gene
SIO_000068: ncbigene

position:5438:1
position: 5438
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4650-5438:1:exon

COX3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
alternative label: COIII
gene: COX3
gene synonym: COIII
codon start: 1
transl table: 5
product: cytochrome c oxidase subunit III
translation: MSNHMNHPFHLVDKSPWPILSAFSVMSLVSGLAKWFHTFNMDLAILGILSTTLVMIQWWRDVVREGTFQGLHTSKVGVGLRWGMILFIASEVLFFVSFFWAFFHSSLAPAVELGSAWPPLGIKPFNPFQIPLLNTAILLASGVTVTWAHHALMENNHTQAFQGLFLTVFLGFYFTSLQALEYFEAPFSIADAVYGTTFFVATGFHGLHVIIGTTFLLICLIRHTLHHFSFTHHFGFEAAAWYWHFVDVVWLFLFISIYWWGN
SIO_010081: COX3
subclass of: SO_0000673
so part of: COX3
location: 4650..5438
location: region:4650-5438:1
so has part: feature:4650-5438:1:exon

NP_008626.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4650-5438:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Gly
so part of: sequence
location: 5439..5499
location: region:5439-5499:1
so has part: feature:5439-5499:1:region

position:5439:1
position: 5439
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5499:1
position: 5499
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5439-5499:1:region

ND3
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
gene: ND3
so part of: sequence
location: 5500..5853
location: region:5500-5853:1
so has part: feature:5500-5853:1:exon
subclass of: SO_0000010

808492
type: Gene
SIO_000068: ncbigene

position:5500:1
position: 5500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5853:1
position: 5853
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5500-5853:1:exon

ND3
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
gene: ND3
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 3
translation: MFQLMIFTPLILTISSVVLVLSLALSKKSKMNREKSSPFECGFDANSNQRLPFSLRFFLVTIIFLIFDVEIVILFPAIQSIFTSQEFYWNFIFISFLIILLGGLFHEWKQGSLNWAI
SIO_010081: ND3
subclass of: SO_0000673
so part of: ND3
location: 5500..5853
location: region:5500-5853:1
so has part: feature:5500-5853:1:exon

NP_008627.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5500-5853:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Ala
so part of: sequence
location: 5853..5918
location: region:5853-5918:1
so has part: feature:5853-5918:1:region

position:5918:1
position: 5918
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5853-5918:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Arg
so part of: sequence
location: 5920..5984
location: region:5920-5984:1
so has part: feature:5920-5984:1:region

position:5920:1
position: 5920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5984:1
position: 5984
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5920-5984:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Asn
so part of: sequence
location: 5985..6051
location: region:5985-6051:1
so has part: feature:5985-6051:1:region

position:5985:1
position: 5985
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6051:1
position: 6051
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5985-6051:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Ser
codon recognized: AGN
so part of: sequence
location: 6052..6116
location: region:6052-6116:1
so has part: feature:6052-6116:1:region

position:6052:1
position: 6052
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6116:1
position: 6116
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6052-6116:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Glu
so part of: sequence
location: 6117..6184
location: region:6117-6184:1
so has part: feature:6117-6184:1:region

position:6117:1
position: 6117
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6184:1
position: 6184
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6117-6184:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Phe
so part of: sequence
location: complement(6184..6249)
location: region:6184-6249:-1
so has part: feature:6184-6249:-1:region

position:6184:-1
position: 6184
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:6249:-1
position: 6249
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6184-6249:-1:region

ND5
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
gene: ND5
so part of: sequence
location: complement(6250..7957)
location: region:6250-7957:-1
so has part: feature:6250-7957:-1:exon
subclass of: SO_0000010

808493
type: Gene
SIO_000068: ncbigene

position:6250:-1
position: 6250
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7957:-1
position: 7957
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6250-7957:-1:exon

ND5
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
gene: ND5
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(6250),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 5
translation: MTVDKYLYQKISFFLVNLMFIAGFTGVFLSSEGTSIFFEWFLGGSSVNFSMIFLLDSMSCFFLAVVLCISGNVVWYSKSYMALDPNANRFILLVLGFVASMAILILSPNILSILLGWDGLGLISYGLVIYYPSKKSSSAGMITVLSNRVGDVCILLSIAWFVSVGDFNFSIWAFYNNVEFSNWVPLLVLLAAMTKSAQIPFSAWLPAAMAAPTPVSALVHSSTLVTAGVYLLIRFSFILGETCSALLLFISIMTMFMSGVVAIFEYDLKKIIALSTLSQLGMMMFSISLGLYELAFFHLLTHALFKALLFLCAGILIHGAGNTQDIRSFGGLSLNFPLVTVCMNLANLSLCGVPFLAGFYSKDLIVELACQYSWGIFVLLMMFICLSLTVLYSVRLTYLSFVGPYGGGTSISVCESDYSLVGPVVILSFTSLVSGPILSWLNFPAPVLIFLPVFLKWGALFFVGVSLLVMLSLQGLTYSYKWGAVSKFSGLMWFLPWLTGQGFSMKTLKNADHLLKIYDQGWLEFYSSKGLEVVGGKVNTLNLKFQHSSLKLHFLIFLLWLFLCFIYIL
SIO_010081: ND5
subclass of: SO_0000673
so part of: ND5
location: complement(6250..7957)
location: region:6250-7957:-1
so has part: feature:6250-7957:-1:exon

NP_008628.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6250-7957:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-His
so part of: sequence
location: complement(7952..8015)
location: region:7952-8015:-1
so has part: feature:7952-8015:-1:region

position:7952:-1
position: 7952
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:8015:-1
position: 8015
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7952-8015:-1:region

ND4
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
gene: ND4
so part of: sequence
location: complement(8016..9336)
location: region:8016-9336:-1
so has part: feature:8016-9336:-1:exon
subclass of: SO_0000010

808494
type: Gene
SIO_000068: ncbigene

position:8016:-1
position: 8016
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9336:-1
position: 9336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8016-9336:-1:exon

ND4
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
gene: ND4
note: TAA stop codon is completed by the addition of 3' A residues to the mRNA
codon start: 1
transl except: (pos:complement(8016),aa:TERM)
transl table: 5
product: NADH dehydrogenase subunit 4
translation: MLKFILMGSCMTLFFSNWGVAVTLLFFMAFVFGVGMSGFGLGLVNLIQVDLMSYFLSYLSIWILAMMIMMSFYVKDHKSFPEVFLGLGVGMLIFLLVSFGTSDLLMYYIAFETTLIPIFLLVMGWGYQPERISASYFLLFYTLAASLPLLLGILWVNFTDCSLDYFFLGQGAQFSNPILFWLMLLAFLVKLPVYFGHLWLPKAHVEAPVAGSMILAGVLLKLGGYGMVRVVPYIELSLSEFSSFLMSVSLVGGVTASVICIRQTDCKSLVAYSSVAHMALVLLGVVINSSVGLAGVVTIMISHGLCSSGLFSLVGMIYERMGTRSIILIRSLITLAPLSTLWWFLFAISNMAAPPSPNLLGEIYLFISSIGWWGGSSLLVGGLSFMAGAYNLFLFVSTQHGTDSFLSNSMGDCSFREHLVLFLHMAPFILLFPVLSHLFL
SIO_010081: ND4
subclass of: SO_0000673
so part of: ND4
location: complement(8016..9336)
location: region:8016-9336:-1
so has part: feature:8016-9336:-1:exon

NP_008629.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8016-9336:-1:exon

ND4L
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
gene: ND4L
so part of: sequence
location: complement(9339..9614)
location: region:9339-9614:-1
so has part: feature:9339-9614:-1:exon
subclass of: SO_0000010

808495
type: Gene
SIO_000068: ncbigene

position:9339:-1
position: 9339
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9614:-1
position: 9614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9339-9614:-1:exon

ND4L
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
gene: ND4L
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 4L
translation: MVLLMGSMLIFLFSFISKRKHLLATLLSLEGLMLMIFGVLFWVSSMVSFSNFVLIFLTLTACEGALGLSLLVSLVRTHGGDNFNSLNALQC
SIO_010081: ND4L
subclass of: SO_0000673
so part of: ND4L
location: complement(9339..9614)
location: region:9339-9614:-1
so has part: feature:9339-9614:-1:exon

NP_008630.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9339-9614:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Thr
so part of: sequence
location: 9646..9710
location: region:9646-9710:1
so has part: feature:9646-9710:1:region

position:9646:1
position: 9646
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9710:1
position: 9710
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9646-9710:1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Pro
so part of: sequence
location: complement(9711..9775)
location: region:9711-9775:-1
so has part: feature:9711-9775:-1:region

position:9711:-1
position: 9711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:9775:-1
position: 9775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9711-9775:-1:region

ND6
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
gene: ND6
so part of: sequence
location: 9778..10290
location: region:9778-10290:1
so has part: feature:9778-10290:1:exon
subclass of: SO_0000010

808496
type: Gene
SIO_000068: ncbigene

position:9778:1
position: 9778
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10290:1
position: 10290
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9778-10290:1:exon

ND6
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
gene: ND6
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 6
translation: MGQFFLLTGTVFMVFMFPLVSHPLLMGLIILIITFMIAATLGLGGLSSWLSYVLVLILLGGLLVIFIYISLLASNENQTPQSNKIKMFFLSTTSILAGSLVISSSLKVFDSKTNALLKMTHYNNESTDWLNLLYSEQLGGMTIFLVLYLLLTLIVVVAISKNDSSSLRAL
SIO_010081: ND6
subclass of: SO_0000673
so part of: ND6
location: 9778..10290
location: region:9778-10290:1
so has part: feature:9778-10290:1:exon

NP_008631.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9778-10290:1:exon

CYTB
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
alternative label: CytB
gene: CYTB
gene synonym: CytB
so part of: sequence
location: 10298..11431
location: region:10298-11431:1
so has part: feature:10298-11431:1:exon
subclass of: SO_0000010

808498
type: Gene
SIO_000068: ncbigene

position:10298:1
position: 10298
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11431:1
position: 11431
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10298-11431:1:exon

CYTB
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
alternative label: CytB
gene: CYTB
gene synonym: CytB
codon start: 1
transl table: 5
product: cytochrome b
translation: MATLRNTHPLMKILNSAVVDLPAPSNISSWWNFGSLLGLCLVTQIFTGIFLAMHYTPHVEMAFSSVIHIIRDVNYGWLLRTIHANGASFFFICLYLHVGRGLYYGSYLFLLTWFSGILLLLLTMAAAFMGYVLPWGQMSFWGATVITNLLSAIPYMGDMIVQWLWGGFAVDNATLNRFFSFHFLIPFIIMGVVIIHLLFLHQTGSNNPLGLKSDSDKIPFHPYFTIKDLVGFLFMLSFLIILTLLAPNLLGDPENFNPANPLVTPVHIQPEWYFLFAYAILRSIPNKLGGVLALLLSILILAIMPIWHKSEMKGLEFYPFNKFLFWSLIGTVFILTWIGAKPVEDPYVLVGQLFTAIYFSYFILAPLTLKIWDKILA
SIO_010081: CYTB
subclass of: SO_0000673
so part of: CYTB
location: 10298..11431
location: region:10298-11431:1
so has part: feature:10298-11431:1:exon

NP_008632.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10298-11431:1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Ser
codon recognized: UCN
so part of: sequence
location: 11432..11500
location: region:11432-11500:1
so has part: feature:11432-11500:1:region

position:11432:1
position: 11432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11500:1
position: 11500
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11432-11500:1:region

ND1
type: Gene
subclass of: SO_0000704
RO_0002162: 6669
gene: ND1
so part of: sequence
location: complement(11491..12426)
location: region:11491-12426:-1
so has part: feature:11491-12426:-1:exon
subclass of: SO_0000010

808499
type: Gene
SIO_000068: ncbigene

position:11491:-1
position: 11491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12426:-1
position: 12426
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11491-12426:-1:exon

ND1
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 6669
gene: ND1
codon start: 1
transl table: 5
product: NADH dehydrogenase subunit 1
translation: MIQVILFLVVVVCVLVGVAFFTLFERKLLGYIQLRKGPNKVGLGGVLQPFSDAIKLFSKEHVSPSTSNYSAFLIAPCFSLGLSLLMWLSIPSFFNLLSFNKSVLFFLCGLGVGVYGLLAAGWSSNSKYSLIGCLRGVAQTVSYEVSLVLILFTPLVVTVGYELGSFSSFQENLWFIFIFPAAGLIWFISCLAETNRTPFDFAEGESELVSGYNTEYSSGGFALIMLAEYTSILFMSFLFSVIFLGGDCSFFVLVSFGVMAFIFVWVRGTLPRFRYDKLMYLAWKFFLPFSISYLVLMAGLLSMLFLGFKEC
SIO_010081: ND1
subclass of: SO_0000673
so part of: ND1
location: complement(11491..12426)
location: region:11491-12426:-1
so has part: feature:11491-12426:-1:exon

NP_008633.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11491-12426:-1:exon

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Leu
codon recognized: CUN
so part of: sequence
location: complement(12430..12496)
location: region:12430-12496:-1
so has part: feature:12430-12496:-1:region

position:12430:-1
position: 12430
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:12496:-1
position: 12496
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12430-12496:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 6669
product: l-rRNA
so part of: sequence
location: complement(12506..13819)
location: region:12506-13819:-1
so has part: feature:12506-13819:-1:region

position:12506:-1
position: 12506
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13819:-1
position: 13819
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12506-13819:-1:region

tRNA
type: Transfer RNA
subclass of: SO_0000253
RO_0002162: 6669
product: tRNA-Val
so part of: sequence
location: complement(13821..13892)
location: region:13821-13892:-1
so has part: feature:13821-13892:-1:region

position:13821:-1
position: 13821
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:13892:-1
position: 13892
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13821-13892:-1:region

rRNA
type: Ribosomal RNA
subclass of: SO_0000252
RO_0002162: 6669
product: s-rRNA
so part of: sequence
location: complement(13892..14644)
location: region:13892-14644:-1
so has part: feature:13892-14644:-1:region

position:14644:-1
position: 14644
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13892-14644:-1:region

D-loop
type: Displacement Loop
subclass of: SO_0000297
RO_0002162: 6669
note: putative mitochondrial control region
so part of: sequence
location: 14645..15333
location: region:14645-15333:1
so has part: feature:14645-15333:1:region

position:14645:1
position: 14645
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14645-15333:1:region