Erwinia amylovora CFBP1430 plasmid pEA29, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
Complete genome sequence of the fire blight pathogen Erwinia amylovora CFBP 1430 and comparison to other Erwinia spp
Submitted (24-JUL-2009) Blom J., Cebitec, Bielefeld University, Universitaetsstr. 25, 33615, GERMANY
REFSEQ INFORMATION: The reference sequence is identical to\nFN434114.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/30/2022 00:58:51\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,488\nCDSs (total) :: 3,367\nGenes (coding) :: 3,284\nCDSs (with protein) :: 3,284\nGenes (RNA) :: 121\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 77\nncRNAs :: 22\nPseudo Genes (total) :: 83\nCDSs (without protein) :: 83\nPseudo Genes (ambiguous residues) :: 0 of 83\nPseudo Genes (frameshifted) :: 48 of 83\nPseudo Genes (incomplete) :: 43 of 83\nPseudo Genes (internal stop) :: 31 of 83\nPseudo Genes (multiple problems) :: 30 of 83\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
Protein involved in initiation of plasmid replication
COORDINATES: similar to AA sequence:RefSeq:WP_009351627.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011113994.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_002231174.1
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0004175 - endopeptidase activity [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_009351639.1
COORDINATES: similar to AA sequence:RefSeq:WP_012440525.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009351645.1
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013202123.1
COORDINATES: similar to AA sequence:RefSeq:WP_007899852.1
helix-turn-helix transcriptional regulator
Uncharacterized protein related to capsule biosynthesis enzymes
COORDINATES: similar to AA sequence:RefSeq:WP_009351649.1
type II toxin-antitoxin system HipA family toxin
Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2
COORDINATES: similar to AA sequence:RefSeq:WP_011078060.1
Uncharacterized enzyme of thiazole biosynthesis
COORDINATES: similar to AA sequence:RefSeq:WP_009093096.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598218.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006122035.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
Antitoxin of toxin-antitoxin stability system
COORDINATES: similar to AA sequence:RefSeq:WP_009351656.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_008958605.1
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_076611384.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611483.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: similar to AA sequence:RefSeq:WP_000051067.1
ATPases involved in chromosome partitioning
COORDINATES: similar to AA sequence:RefSeq:WP_000864791.1
Site-specific recombinases, DNA invertase Pin homologs
COORDINATES: similar to AA sequence:RefSeq:WP_009351668.1
COORDINATES: similar to AA sequence:RefSeq:WP_009351670.1
COORDINATES: similar to AA sequence:RefSeq:WP_011114006.1
COORDINATES: similar to AA sequence:RefSeq:WP_009351674.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013036341.1
COORDINATES: similar to AA sequence:RefSeq:WP_018412614.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011114009.1
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: similar to AA sequence:RefSeq:WP_001722375.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.