Streptomyces incarnatus strain NRRL 8089 isolate Taxonomy ID: 665007 plasmid unnamed_2, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Draft Genome Sequence of Streptomyces incarnatus NRRL8089, which Produces the Nucleoside Antibiotic Sinefungin
Submitted (19-MAY-2015) Grad Sch Life Environ Sci, Okayama University, 1-1-1Tsushima-naka, Okayama, Okayama 700-8530, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP011499.1.\n\nAnnotation modified by submitter to include selenosome genes.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-MAY-2015\nAssembly Method :: Newbler v. 2.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 50.0x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/22/2023 04:16:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,139\nCDSs (total) :: 8,063\nGenes (coding) :: 7,753\nCDSs (with protein) :: 7,753\nGenes (RNA) :: 76\nrRNAs :: 1 (5S)\ncomplete rRNAs :: 1 (5S)\ntRNAs :: 72\nncRNAs :: 3\nPseudo Genes (total) :: 310\nCDSs (without protein) :: 310\nPseudo Genes (ambiguous residues) :: 0 of 310\nPseudo Genes (frameshifted) :: 124 of 310\nPseudo Genes (incomplete) :: 246 of 310\nPseudo Genes (internal stop) :: 25 of 310\nPseudo Genes (multiple problems) :: 77 of 310\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_018553410.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_020120488.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_019358610.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612234.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020126321.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
TetR-like C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014672788.1
COORDINATES: similar to AA sequence:RefSeq:WP_014672789.1
COORDINATES: similar to AA sequence:RefSeq:WP_018537947.1
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF039693.1
COORDINATES: protein motif:HMM:NF013753.2
COORDINATES: similar to AA sequence:RefSeq:WP_015655536.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_004994365.1
COORDINATES: protein motif:HMM:NF006967.0
COORDINATES: protein motif:HMM:NF017760.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013254.2
COORDINATES: similar to AA sequence:RefSeq:WP_020458371.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_010305194.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:NF013237.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007490524.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019640.2
COORDINATES: similar to AA sequence:RefSeq:WP_012894258.1
nitroreductase family deazaflavin-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF024925.2
COORDINATES: similar to AA sequence:RefSeq:WP_018544266.1