Streptomyces incarnatus strain NRRL 8089 isolate Taxonomy ID: 665007 plasmid unnamed_1.
Bacteria; Actinomycetota; Actinomycetes; Kitasatosporales; Streptomycetaceae; Streptomyces.
Draft Genome Sequence of Streptomyces incarnatus NRRL8089, which Produces the Nucleoside Antibiotic Sinefungin
Submitted (19-MAY-2015) Grad Sch Life Environ Sci, Okayama University, 1-1-1Tsushima-naka, Okayama, Okayama 700-8530, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nCP011498.1.\n\nAnnotation modified by submitter to include selenosome genes.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 15-MAY-2015\nAssembly Method :: Newbler v. 2.3\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 50.0x\nSequencing Technology :: 454\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/22/2023 04:16:41\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 8,139\nCDSs (total) :: 8,063\nGenes (coding) :: 7,753\nCDSs (with protein) :: 7,753\nGenes (RNA) :: 76\nrRNAs :: 1 (5S)\ncomplete rRNAs :: 1 (5S)\ntRNAs :: 72\nncRNAs :: 3\nPseudo Genes (total) :: 310\nCDSs (without protein) :: 310\nPseudo Genes (ambiguous residues) :: 0 of 310\nPseudo Genes (frameshifted) :: 124 of 310\nPseudo Genes (incomplete) :: 246 of 310\nPseudo Genes (internal stop) :: 25 of 310\nPseudo Genes (multiple problems) :: 77 of 310\n##Genome-Annotation-Data-END##
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024967.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020140348.1
GO:0008236 - serine-type peptidase activity [Evidence IEA]
Type 1 glutamine amidotransferase-like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_020133231.1
COORDINATES: protein motif:HMM:NF023202.2
histone-like nucleoid-structuring protein Lsr2
COORDINATES: similar to AA sequence:RefSeq:WP_020550403.1
COORDINATES: similar to AA sequence:RefSeq:WP_019808227.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018720495.1
COORDINATES: similar to AA sequence:RefSeq:WP_007262457.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004994313.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014669335.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF017760.2
COORDINATES: similar to AA sequence:RefSeq:WP_018569291.1
COORDINATES: similar to AA sequence:RefSeq:WP_007387459.1
COORDINATES: similar to AA sequence:RefSeq:WP_019979985.1
COORDINATES: similar to AA sequence:RefSeq:WP_014669152.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_003995098.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521702.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268493.1
COORDINATES: similar to AA sequence:RefSeq:WP_019979987.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018521694.1
COORDINATES: similar to AA sequence:RefSeq:WP_008742102.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521701.1
COORDINATES: similar to AA sequence:RefSeq:WP_018106289.1
COORDINATES: similar to AA sequence:RefSeq:WP_007387458.1
ScbR family autoregulator-binding transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_018546905.1
AfsA-related hotdog domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006608009.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014050041.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007387457.1
ScbA/BarX family gamma-butyrolactone biosynthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_018548737.1
COORDINATES: similar to AA sequence:RefSeq:WP_005321575.1
AfsR/SARP family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_018521707.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521709.1
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
4'-phosphopantetheinyl transferase superfamily protein
COORDINATES: similar to AA sequence:RefSeq:WP_018569599.1
COORDINATES: similar to AA sequence:RefSeq:WP_018087208.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521821.1
COORDINATES: similar to AA sequence:RefSeq:WP_018521819.1
COORDINATES: similar to AA sequence:RefSeq:WP_007268976.1
COORDINATES: similar to AA sequence:RefSeq:WP_016828562.1
COORDINATES: similar to AA sequence:RefSeq:WP_018568320.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: similar to AA sequence:RefSeq:WP_018568322.1
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_018568327.1
COORDINATES: similar to AA sequence:RefSeq:WP_003998890.1
incomplete; too short partial abutting assembly gap; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
2-oxoacid:ferredoxin oxidoreductase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_019980608.1
COORDINATES: similar to AA sequence:RefSeq:WP_019890938.1
COORDINATES: similar to AA sequence:RefSeq:WP_008404412.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_016575074.1
COORDINATES: similar to AA sequence:RefSeq:WP_019890942.1
COORDINATES: similar to AA sequence:RefSeq:WP_010471976.1
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013805464.1
COORDINATES: similar to AA sequence:RefSeq:WP_006344618.1
lysine N(6)-hydroxylase/L-ornithine N(5)-oxygenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006344617.1
FMN-binding negative transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011603694.1
COORDINATES: similar to AA sequence:RefSeq:WP_014155600.1
COORDINATES: similar to AA sequence:RefSeq:WP_006133849.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_012887003.1
DUF4097 family beta strand repeat-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009301269.1
COORDINATES: similar to AA sequence:RefSeq:WP_018491011.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
GO:0006525 - arginine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018836813.1
COORDINATES: similar to AA sequence:RefSeq:WP_019325166.1
GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
COORDINATES: similar to AA sequence:RefSeq:WP_019526146.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: similar to AA sequence:RefSeq:WP_016642300.1
GO:0016787 - hydrolase activity [Evidence IEA]
serine hydrolase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004994432.1
COORDINATES: similar to AA sequence:RefSeq:WP_016645359.1
COORDINATES: similar to AA sequence:RefSeq:WP_011856103.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638465.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638466.1
amino acid adenylation domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006344614.1
COORDINATES: similar to AA sequence:RefSeq:WP_018803939.1
COORDINATES: similar to AA sequence:RefSeq:WP_006344612.1
COORDINATES: similar to AA sequence:RefSeq:WP_018803941.1
COORDINATES: similar to AA sequence:RefSeq:WP_018803942.1
COORDINATES: similar to AA sequence:RefSeq:WP_011603704.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638472.1
COORDINATES: similar to AA sequence:RefSeq:WP_004953788.1
COORDINATES: similar to AA sequence:RefSeq:WP_018803931.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018803945.1
COORDINATES: similar to AA sequence:RefSeq:WP_018803946.1
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018803947.1
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018803948.1
COORDINATES: similar to AA sequence:RefSeq:WP_011603718.1
COORDINATES: similar to AA sequence:RefSeq:WP_016638480.1
COORDINATES: similar to AA sequence:RefSeq:WP_011603720.1
COORDINATES: similar to AA sequence:RefSeq:WP_011603721.1
COORDINATES: similar to AA sequence:RefSeq:WP_006541952.1
GO:0043880 - crotonyl-CoA reductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003988464.1
COORDINATES: similar to AA sequence:RefSeq:WP_015100438.1
COORDINATES: similar to AA sequence:RefSeq:WP_015610889.1
COORDINATES: similar to AA sequence:RefSeq:WP_016644871.1
COORDINATES: similar to AA sequence:RefSeq:WP_014136439.1
GO:0016874 - ligase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009187898.1
COORDINATES: similar to AA sequence:RefSeq:WP_013006060.1
COORDINATES: similar to AA sequence:RefSeq:WP_014158136.1
COORDINATES: similar to AA sequence:RefSeq:WP_008740019.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_086558177.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018521674.1
COORDINATES: similar to AA sequence:RefSeq:WP_016645659.1
COORDINATES: similar to AA sequence:RefSeq:WP_007301559.1
COORDINATES: similar to AA sequence:RefSeq:WP_018552391.1
COORDINATES: similar to AA sequence:RefSeq:WP_009191647.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: similar to AA sequence:RefSeq:WP_013131530.1
COORDINATES: similar to AA sequence:RefSeq:WP_003970730.1
COORDINATES: protein motif:HMM:NF019429.2
COORDINATES: protein motif:HMM:TIGR00702.1
COORDINATES: protein motif:HMM:NF012546.2
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF019619.2
COORDINATES: similar to AA sequence:RefSeq:WP_005482045.1
COORDINATES: similar to AA sequence:RefSeq:WP_007830245.1
COORDINATES: similar to AA sequence:RefSeq:WP_007389722.1
COORDINATES: protein motif:HMM:NF016763.2
GO:0005576 - extracellular region [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018553992.1
COORDINATES: similar to AA sequence:RefSeq:WP_019886900.1
COORDINATES: similar to AA sequence:RefSeq:WP_018222319.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013253.2
COORDINATES: similar to AA sequence:RefSeq:WP_018543414.1
COORDINATES: similar to AA sequence:RefSeq:WP_018100055.1
COORDINATES: similar to AA sequence:RefSeq:WP_010358018.1
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
rhomboid family intramembrane serine protease
COORDINATES: similar to AA sequence:RefSeq:WP_006607080.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012377440.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014669745.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020134905.1
COORDINATES: similar to AA sequence:RefSeq:WP_014669743.1
GO:0015293 - symporter activity [Evidence IEA]
GO:0006835 - dicarboxylic acid transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013124.2
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: protein motif:HMM:NF015983.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]