Vibrio alginolyticus strain E110 plasmid p1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio.
Temporal Transcriptional Responses of a Vibrio alginolyticus Strain to Podoviridae Phage HH109 Revealed by RNA-Seq
Submitted (27-MAY-2022) College of Oceanography, Hohai University, No. 1 Xikang Road, Nanjing, Jiangsu 210098, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP098035.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Flye v. 2.9\nGenome Representation :: Full\nExpected Final Version :: No\nGenome Coverage :: 63.0x\nSequencing Technology :: PacBio HIFI\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/27/2023 04:49:01\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,787\nCDSs (total) :: 4,617\nGenes (coding) :: 4,596\nCDSs (with protein) :: 4,596\nGenes (RNA) :: 170\nrRNAs :: 13, 12, 12 (5S, 16S, 23S)\ncomplete rRNAs :: 13, 12, 12 (5S, 16S, 23S)\ntRNAs :: 129\nncRNAs :: 4\nPseudo Genes (total) :: 21\nCDSs (without protein) :: 21\nPseudo Genes (ambiguous residues) :: 0 of 21\nPseudo Genes (frameshifted) :: 7 of 21\nPseudo Genes (incomplete) :: 12 of 21\nPseudo Genes (internal stop) :: 3 of 21\nPseudo Genes (multiple problems) :: 1 of 21\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_002051937.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_000568304.1
COORDINATES: similar to AA sequence:RefSeq:WP_002051941.1
host specificity factor TipJ family phage tail protein
COORDINATES: protein motif:HMM:NF014444.2
COORDINATES: similar to AA sequence:RefSeq:WP_016790693.1
COORDINATES: protein motif:HMM:NF018043.2
COORDINATES: similar to AA sequence:RefSeq:WP_017094083.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_012592964.1
COORDINATES: similar to AA sequence:RefSeq:WP_016790686.1
COORDINATES: similar to AA sequence:RefSeq:WP_005307092.1
COORDINATES: similar to AA sequence:RefSeq:WP_016060680.1
COORDINATES: similar to AA sequence:RefSeq:WP_017017638.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0009007 - site-specific DNA-methyltransferase (adenine-specific) activity [Evidence IEA]
GO:0032775 - DNA methylation on adenine [Evidence IEA]
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012196657.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012089985.1
COORDINATES: similar to AA sequence:RefSeq:WP_020335484.1
COORDINATES: similar to AA sequence:RefSeq:WP_020333073.1
COORDINATES: similar to AA sequence:RefSeq:WP_014232310.1
COORDINATES: similar to AA sequence:RefSeq:WP_016530194.1
COORDINATES: similar to AA sequence:RefSeq:WP_012542168.1
phage terminase small subunit P27 family
COORDINATES: similar to AA sequence:RefSeq:WP_009286612.1
COORDINATES: similar to AA sequence:RefSeq:WP_005967184.1
COORDINATES: similar to AA sequence:RefSeq:WP_016854782.1
GO:0044423 - virion component [Evidence IEA]
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0019068 - virion assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000003790.1
GO:0008233 - peptidase activity [Evidence IEA]; GO:0005198 - structural molecule activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007668795.1
COORDINATES: protein motif:HMM:TIGR01560.2
GO:0016032 - viral process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01563.1
COORDINATES: similar to AA sequence:RefSeq:WP_015700600.1
COORDINATES: protein motif:HMM:NF027778.2
COORDINATES: protein motif:HMM:NF027777.2