Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed2, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea.
First report of leaf blight wilt on Dracaena sanderiana by Pantoea stewartii subsp. indologenes in China
Submitted (21-FEB-2020) College of food science and technology, Guangdong Ocean University, East of Huguangyan, Zhanjiang, Guangdong 524088, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP049117.1.\nBacteria and source DNA available from Dr. Hanqiao Hu.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 04-JUL-2019\nAssembly Method :: GS De Novo Assembler v. Canu v1.5\nAssembly Name :: PanSte\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:00:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,717\nCDSs (total) :: 4,604\nGenes (coding) :: 4,545\nCDSs (with protein) :: 4,545\nGenes (RNA) :: 113\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 12\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 19 of 59\nPseudo Genes (incomplete) :: 36 of 59\nPseudo Genes (internal stop) :: 17 of 59\nPseudo Genes (multiple problems) :: 12 of 59\nPseudo Genes (short protein) :: 1 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_013036422.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013036421.1
COORDINATES: similar to AA sequence:RefSeq:WP_002556014.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036419.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013036418.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036417.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036416.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036415.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036414.1
DotH/IcmK family type IV secretion protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036413.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036412.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036411.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036410.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036409.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036408.1
type IV secretory system conjugative DNA transfer family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036407.1
Members of this family include DotD of type IVB secretion systems and TraH of plasmid conjugative plasmid systems, both lipoproteins; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004720806.1
lytic transglycosylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011988434.1
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013036403.1
COORDINATES: protein motif:HMM:NF013884.2
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013036401.1
shufflon system plasmid conjugative transfer pilus tip adhesin PilV
COORDINATES: similar to AA sequence:RefSeq:WP_013036400.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036399.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036398.1
type II secretion system F family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012443221.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036396.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012443219.1
COORDINATES: similar to AA sequence:RefSeq:WP_001034975.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]; GO:0009306 - protein secretion [Evidence IEA]
PilN family type IVB pilus formation outer membrane protein
COORDINATES: protein motif:HMM:NF022136.2
COORDINATES: similar to AA sequence:RefSeq:WP_013036391.1
COORDINATES: similar to AA sequence:RefSeq:WP_012439776.1
COORDINATES: similar to AA sequence:RefSeq:WP_012439775.1
COORDINATES: similar to AA sequence:RefSeq:WP_012439774.1
TraI/MobA(P) family conjugative relaxase
COORDINATES: similar to AA sequence:RefSeq:WP_013036386.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013036385.1
COORDINATES: similar to AA sequence:RefSeq:WP_000113358.1
COORDINATES: similar to AA sequence:RefSeq:WP_013199998.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036382.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013036381.1
COORDINATES: similar to AA sequence:RefSeq:WP_014063861.1
COORDINATES: similar to AA sequence:RefSeq:WP_013512861.1
COORDINATES: similar to AA sequence:RefSeq:WP_007869725.1
COORDINATES: protein motif:HMM:NF014273.2
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019104708.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036372.1
COORDINATES: similar to AA sequence:RefSeq:WP_016495620.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105022.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104971.1
COORDINATES: similar to AA sequence:RefSeq:WP_006322813.1
COORDINATES: protein motif:HMM:NF039499.1
COORDINATES: similar to AA sequence:RefSeq:WP_019104950.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_000457616.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014839921.1
COORDINATES: similar to AA sequence:RefSeq:WP_012541816.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000549075.1
COORDINATES: similar to AA sequence:RefSeq:WP_014594566.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606796.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260801.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260804.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606793.1
GO:0004619 - phosphoglycerate mutase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
2,3-bisphosphoglycerate-dependent phosphoglycerate mutase
COORDINATES: similar to AA sequence:RefSeq:WP_010260810.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010260813.1
COORDINATES: similar to AA sequence:RefSeq:WP_010260815.1
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_010260817.1
COORDINATES: similar to AA sequence:RefSeq:WP_014594570.1
COORDINATES: similar to AA sequence:RefSeq:WP_014606787.1
beta-propeller fold lactonase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_000457546.1
GO:0003684 - damaged DNA binding [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_015874449.1
COORDINATES: similar to AA sequence:RefSeq:WP_004861255.1
COORDINATES: protein motif:HMM:NF037432.2
HEPN/Toprim-associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008322828.1
COORDINATES: protein motif:HMM:NF028182.2
putative phage abortive infection protein
COORDINATES: similar to AA sequence:RefSeq:WP_008786839.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: protein motif:HMM:NF020442.2
COORDINATES: similar to AA sequence:RefSeq:WP_013199725.1
COORDINATES: similar to AA sequence:RefSeq:WP_000253166.1
COORDINATES: similar to AA sequence:RefSeq:WP_002211098.1
COORDINATES: similar to AA sequence:RefSeq:WP_008109314.1
COORDINATES: similar to AA sequence:RefSeq:WP_004093746.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017801953.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_008814894.1
COORDINATES: similar to AA sequence:RefSeq:WP_002463340.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006122289.1
COORDINATES: protein motif:HMM:TIGR03475.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002233139.1
COORDINATES: similar to AA sequence:RefSeq:WP_001568070.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036430.1
F-type conjugative transfer protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_013036429.1
thioredoxin fold domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036428.1
COORDINATES: similar to AA sequence:RefSeq:WP_013036427.1
plasmid IncI1-type surface exclusion protein ExcA
COORDINATES: similar to AA sequence:RefSeq:WP_017493772.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105438.1
Hha/YmoA family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036423.1