Pantoea stewartii strain ZJ-FGZX1 plasmid unnamed1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Pantoea.
First report of leaf blight wilt on Dracaena sanderiana by Pantoea stewartii subsp. indologenes in China
Submitted (21-FEB-2020) College of food science and technology, Guangdong Ocean University, East of Huguangyan, Zhanjiang, Guangdong 524088, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP049116.1.\nBacteria and source DNA available from Dr. Hanqiao Hu.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 04-JUL-2019\nAssembly Method :: GS De Novo Assembler v. Canu v1.5\nAssembly Name :: PanSte\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 100.0x\nSequencing Technology :: Oxford Nanopore\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/28/2023 11:00:02\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,717\nCDSs (total) :: 4,604\nGenes (coding) :: 4,545\nCDSs (with protein) :: 4,545\nGenes (RNA) :: 113\nrRNAs :: 8, 7, 7 (5S, 16S, 23S)\ncomplete rRNAs :: 8, 7, 7 (5S, 16S, 23S)\ntRNAs :: 79\nncRNAs :: 12\nPseudo Genes (total) :: 59\nCDSs (without protein) :: 59\nPseudo Genes (ambiguous residues) :: 0 of 59\nPseudo Genes (frameshifted) :: 19 of 59\nPseudo Genes (incomplete) :: 36 of 59\nPseudo Genes (internal stop) :: 17 of 59\nPseudo Genes (multiple problems) :: 12 of 59\nPseudo Genes (short protein) :: 1 of 59\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF014698.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016937038.1
COORDINATES: similar to AA sequence:RefSeq:WP_013025465.1
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_024650469.1
YopT-type cysteine protease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017701518.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027913.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604650.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333131.1
GO:0004339 - glucan 1,4-alpha-glucosidase activity [Evidence IEA]
GO:0009251 - glucan catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003517664.1
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: similar to AA sequence:RefSeq:WP_006121896.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013027850.1
COORDINATES: similar to AA sequence:RefSeq:WP_013023785.1
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]
GO:0006276 - plasmid maintenance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015854771.1
type II toxin-antitoxin system CcdA family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_006121901.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004179523.1
GO:0043856 - anti-sigma factor antagonist activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008501669.1
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020324874.1
COORDINATES: similar to AA sequence:RefSeq:WP_019705449.1
COORDINATES: similar to AA sequence:RefSeq:WP_019704221.1
COORDINATES: similar to AA sequence:RefSeq:WP_007793450.1
COORDINATES: similar to AA sequence:RefSeq:WP_004179509.1
COORDINATES: similar to AA sequence:RefSeq:WP_004179507.1
COORDINATES: similar to AA sequence:RefSeq:WP_004183750.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121909.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121910.1
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006121911.1
GO:0015218 - pyrimidine nucleotide transmembrane transporter activity [Evidence IEA]
GO:0006864 - pyrimidine nucleotide transport [Evidence IEA]
pyrimidine utilization transport protein G
COORDINATES: similar to AA sequence:RefSeq:WP_014333149.1
pyrimidine utilization flavin reductase protein F
COORDINATES: similar to AA sequence:RefSeq:WP_011816247.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121915.1
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
GO:0006212 - uracil catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004443491.1
COORDINATES: similar to AA sequence:RefSeq:WP_013576308.1
COORDINATES: similar to AA sequence:RefSeq:NP_309285.4
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014598333.1
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007893036.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
amino acid ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006121921.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333166.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006121924.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121925.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027863.1
COORDINATES: similar to AA sequence:RefSeq:WP_019106603.1
GO:0009288 - bacterial-type flagellum [Evidence IEA]; GO:0009421 - bacterial-type flagellum filament cap [Evidence IEA]
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017458354.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0071973 - bacterial-type flagellum-dependent cell motility [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121928.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0052873 - FMN reductase (NADPH) activity [Evidence IEA]; GO:0008752 - FMN reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121929.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121930.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333133.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121932.1
COORDINATES: similar to AA sequence:RefSeq:WP_010433580.1
PTS beta-glucoside transporter subunit IIABC
COORDINATES: similar to AA sequence:RefSeq:WP_004864750.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_005227943.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027843.1
GO:0046417 - chorismate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019105837.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121942.1
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF
COORDINATES: similar to AA sequence:RefSeq:WP_014333104.1
4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE
COORDINATES: similar to AA sequence:RefSeq:WP_006121944.1
GO:0000030 - mannosyltransferase activity [Evidence IEA]; GO:0016763 - pentosyltransferase activity [Evidence IEA]
GO:0006493 - protein O-linked glycosylation [Evidence IEA]
lipid IV(A) 4-amino-4-deoxy-L-arabinosyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_006121945.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
4-deoxy-4-formamido-L-arabinose- phosphoundecaprenol deformylase
COORDINATES: similar to AA sequence:RefSeq:WP_006121946.1
GO:0016742 - hydroxymethyl-, formyl- and related transferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA
COORDINATES: similar to AA sequence:RefSeq:WP_013027836.1
GO:0016780 - phosphotransferase activity, for other substituted phosphate groups [Evidence IEA]
undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase
COORDINATES: similar to AA sequence:RefSeq:WP_014333101.1
GO:0008483 - transaminase activity [Evidence IEA]
UDP-4-amino-4-deoxy-L-arabinose aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013185251.1
COORDINATES: similar to AA sequence:RefSeq:WP_012968478.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604614.1
COORDINATES: similar to AA sequence:RefSeq:WP_013096847.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121954.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333093.1
GO:0005215 - transporter activity [Evidence IEA]
efflux RND transporter periplasmic adaptor subunit
COORDINATES: similar to AA sequence:RefSeq:WP_006121956.1
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333091.1
COORDINATES: similar to AA sequence:RefSeq:WP_017146169.1
gamma-glutamylcyclotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006121959.1
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121960.1
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121962.1
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121963.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604602.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027815.1
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121966.1
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014333073.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598171.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121969.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333071.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598172.1
COORDINATES: similar to AA sequence:RefSeq:WP_004102954.1
GO:0005886 - plasma membrane [Evidence IEA]
MetQ/NlpA family ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014333068.1
phage antirepressor KilAC domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006121974.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333065.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019105848.1
COORDINATES: similar to AA sequence:RefSeq:WP_013356613.1
GO:0019152 - acetoin dehydrogenase activity [Evidence IEA]
GO:0045150 - acetoin catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003850593.1
GO:0003984 - acetolactate synthase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
GO:0034077 - butanediol metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019105851.1
GO:0047605 - acetolactate decarboxylase activity [Evidence IEA]
GO:0045151 - acetoin biosynthetic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008926805.1
GO:0001216 - DNA-binding transcription activator activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005122303.1
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019105853.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121980.1
COORDINATES: similar to AA sequence:RefSeq:WP_003857437.1
COORDINATES: similar to AA sequence:RefSeq:WP_010618046.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121984.1
GO:0047429 - nucleoside triphosphate diphosphatase activity [Evidence IEA]
GO:0009143 - nucleoside triphosphate catabolic process [Evidence IEA]
non-canonical purine NTP pyrophosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_013028069.1
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_013196326.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121990.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121991.1
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121992.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013028065.1
COORDINATES: similar to AA sequence:RefSeq:WP_011817158.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017348691.1
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121995.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598185.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105858.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333044.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121999.1
DNA-binding transcriptional regulator YciT
COORDINATES: similar to AA sequence:RefSeq:WP_006122000.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006122001.1
GO:0008982 - protein-N(PI)-phosphohistidine-sugar phosphotransferase activity [Evidence IEA]
GO:0009401 - phosphoenolpyruvate-dependent sugar phosphotransferase system [Evidence IEA]
PTS cellobiose/arbutin/salicin transporter subunit IIBC
COORDINATES: similar to AA sequence:RefSeq:WP_013028055.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333038.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598192.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122004.1
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014333035.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105862.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105863.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333030.1
COORDINATES: similar to AA sequence:RefSeq:WP_013511642.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
23S rRNA pseudouridine(2604) synthase RluF
COORDINATES: similar to AA sequence:RefSeq:WP_014333028.1
autotransporter domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014598196.1
MurR/RpiR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013196441.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014341919.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333023.1
COORDINATES: similar to AA sequence:RefSeq:WP_010670556.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604574.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
xanthine dehydrogenase family protein molybdopterin-binding subunit
COORDINATES: similar to AA sequence:RefSeq:WP_010670557.1
xanthine dehydrogenase family protein subunit M
COORDINATES: similar to AA sequence:RefSeq:WP_014333021.1
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015571184.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016157327.1
iron/manganese ABC transporter permease subunit SitC
COORDINATES: similar to AA sequence:RefSeq:WP_014333019.1
manganese/iron ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_014598204.1
GO:0046872 - metal ion binding [Evidence IEA]
GO:0030001 - metal ion transport [Evidence IEA]
metal ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013028032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028031.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028030.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604571.1
GO:0071468 - cellular response to acidic pH [Evidence IEA]
biofilm/acid-resistance regulator YmgB/AriR
COORDINATES: similar to AA sequence:RefSeq:WP_013028028.1
COORDINATES: protein motif:HMM:NF019078.2
COORDINATES: similar to AA sequence:RefSeq:WP_008460564.1
TcfC E-set like domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008107322.1
COORDINATES: similar to AA sequence:RefSeq:WP_004201219.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001536669.1
TnpB, as the term is used for proteins encoded by IS66 family insertion elements, is considered an accessory protein, since TnpC, encoded by a neighboring gene, is a DDE family transposase.; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS66 family insertion sequence element accessory protein TnpB
COORDINATES: similar to AA sequence:RefSeq:WP_006122016.1
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006122017.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122018.1
COORDINATES: similar to AA sequence:RefSeq:WP_009092747.1
COORDINATES: similar to AA sequence:RefSeq:WP_003855844.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604568.1
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]
RepB family plasmid replication initiator protein
COORDINATES: similar to AA sequence:RefSeq:WP_013195974.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028017.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122027.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333271.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122029.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122030.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014604694.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006122032.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028010.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_006122035.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598218.1
GO:0003824 - catalytic activity [Evidence IEA]
GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_009093096.1
GO:1990107 - thiazole synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019105885.1
COORDINATES: similar to AA sequence:RefSeq:WP_006810320.1
GO:0003674 - molecular_function [Evidence IEA]
type VI secretion system tube protein TssD
COORDINATES: similar to AA sequence:RefSeq:WP_004176129.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333263.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598222.1
COORDINATES: similar to AA sequence:RefSeq:WP_010308528.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014333261.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598224.1
COORDINATES: similar to AA sequence:RefSeq:WP_014333259.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017799524.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027996.1
GO:0005506 - iron ion binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013027995.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004659 - prenyltransferase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
phytoene/squalene synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019105891.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598228.1
GO:0045436 - lycopene beta cyclase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013027992.1
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333254.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122052.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122053.1
COORDINATES: similar to AA sequence:RefSeq:WP_010247433.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122055.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027987.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598235.1
GO:0004359 - glutaminase activity [Evidence IEA]
GO:0006541 - glutamine metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006122058.1
GO:0005247 - voltage-gated chloride channel activity [Evidence IEA]
GO:0006821 - chloride transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001389205.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122060.1
YbhB/YbcL family Raf kinase inhibitor-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_006122061.1
glycine betaine/L-proline transporter ProP
COORDINATES: similar to AA sequence:RefSeq:WP_014598266.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122063.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027955.1
COORDINATES: similar to AA sequence:RefSeq:WP_013196196.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604677.1
COORDINATES: similar to AA sequence:RefSeq:YP_005226720.1
COORDINATES: similar to AA sequence:RefSeq:WP_003851475.1
GO:0008509 - monoatomic anion transmembrane transporter activity [Evidence IEA]
GO:0006820 - monoatomic anion transport [Evidence IEA]
DASS family sodium-coupled anion symporter
COORDINATES: similar to AA sequence:RefSeq:WP_013196203.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122070.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
GO:0017013 - protein flavinylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013196205.1
two-component system response regulator DcuR
COORDINATES: similar to AA sequence:RefSeq:WP_003851467.1
COORDINATES: similar to AA sequence:RefSeq:NP_490541.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_014598277.1
GO:0008924 - malate dehydrogenase (quinone) activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333227.1
COORDINATES: similar to AA sequence:RefSeq:WP_010670318.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017802287.1
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
diaminobutyrate--2-oxoglutarate transaminase
COORDINATES: similar to AA sequence:RefSeq:WP_014333223.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF025123.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
ABC transporter six-transmembrane domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_019105913.1
sugar dehydrogenase complex small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_014598283.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604667.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122081.1
sensor domain-containing diguanylate cyclase
COORDINATES: similar to AA sequence:RefSeq:WP_003848185.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598293.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604661.1
COORDINATES: similar to AA sequence:RefSeq:WP_014598295.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122087.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014598297.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105921.1
LysR substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013027921.1
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019105923.1
COORDINATES: similar to AA sequence:RefSeq:WP_019105924.1
COORDINATES: similar to AA sequence:RefSeq:WP_010247149.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027917.1
COORDINATES: similar to AA sequence:RefSeq:WP_016247577.1
GO:0016855 - racemase and epimerase activity, acting on amino acids and derivatives [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006122092.1
COORDINATES: similar to AA sequence:RefSeq:WP_008106155.1
COORDINATES: similar to AA sequence:RefSeq:WP_013027911.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00442
guanidine-I (ykkC/yxkD leader) riboswitch; Guanidine-I riboswitches control genes whose products are involved in modification or pumping out guanidine as a toxic compound from bacteria; This is class of guanidine riboswitches is based on the ykkC/yxkD leader; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_012541695.1
putative urea ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_003855145.1
COORDINATES: similar to AA sequence:RefSeq:WP_014604646.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014333188.1
urea carboxylase-associated family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014700309.1
COORDINATES: similar to AA sequence:RefSeq:WP_004861838.1
GO:0004847 - urea carboxylase activity [Evidence IEA]
GO:0019627 - urea metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013358321.1
COORDINATES: similar to AA sequence:RefSeq:WP_003852463.1
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014598309.1
GO:0052689 - carboxylic ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012635.2
COORDINATES: protein motif:HMM:NF012786.2
GO:0015473 - fimbrial usher porin activity [Evidence IEA]
GO:0009297 - pilus assembly [Evidence IEA]
fimbria/pilus outer membrane usher protein
COORDINATES: protein motif:HMM:NF012565.2
GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]
COORDINATES: protein motif:HMM:NF012510.2
biotin carboxylase N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008109314.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005159173.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017801953.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013316604.1
COORDINATES: similar to AA sequence:RefSeq:WP_006120542.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003409094.1
GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
XopAH/AvrB family type III secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_012440297.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121853.1
AvrE-family type 3 secretion system effector
COORDINATES: similar to AA sequence:RefSeq:WP_012669299.1
COORDINATES: similar to AA sequence:RefSeq:WP_016191028.1
HrpV family type III secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_016191027.1
HrpT family type III secretion system protein
COORDINATES: similar to AA sequence:RefSeq:WP_004155366.1
type III secretion system outer membrane ring subunit SctC
COORDINATES: similar to AA sequence:RefSeq:WP_014543267.1
COORDINATES: similar to AA sequence:RefSeq:WP_012669304.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121863.1
GO:0030257 - type III protein secretion system complex [Evidence IEA]
type III secretion system stator protein SctL
COORDINATES: similar to AA sequence:RefSeq:WP_013036236.1
COORDINATES: similar to AA sequence:RefSeq:WP_012884577.1
type III secretion inner membrane ring lipoprotein SctJ
COORDINATES: similar to AA sequence:RefSeq:WP_012440282.1
GO:0009306 - protein secretion [Evidence IEA]
EscI/YscI/HrpB family type III secretion system inner rod protein
COORDINATES: similar to AA sequence:RefSeq:WP_009112561.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121868.1
sigma-54 dependent transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_014543260.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121870.1
COORDINATES: similar to AA sequence:RefSeq:WP_012440277.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006121872.1
GO:0009986 - cell surface [Evidence IEA]
GO:0050709 - negative regulation of protein secretion [Evidence IEA]; GO:0030254 - protein secretion by the type III secretion system [Evidence IEA]
type III secretion system gatekeeper subunit SctW
COORDINATES: similar to AA sequence:RefSeq:WP_004171929.1
type III secretion system export apparatus subunit SctV
COORDINATES: similar to AA sequence:RefSeq:WP_004155348.1
type III secretion system inner membrane ring subunit SctD
COORDINATES: similar to AA sequence:RefSeq:WP_012440273.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0046034 - ATP metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016191010.1
COORDINATES: similar to AA sequence:RefSeq:WP_014539471.1
type III secretion system HrpP C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006121879.1
FliM/FliN family flagellar motor switch protein
COORDINATES: similar to AA sequence:RefSeq:WP_004168417.1
type III secretion system export apparatus subunit SctR
COORDINATES: similar to AA sequence:RefSeq:WP_012669322.1
type III secretion system export apparatus subunit SctS
COORDINATES: similar to AA sequence:RefSeq:WP_012440267.1
type III secretion system export apparatus subunit SctT
COORDINATES: similar to AA sequence:RefSeq:WP_004168416.1
type III secretion system export apparatus subunit SctU
COORDINATES: similar to AA sequence:RefSeq:WP_016191003.1
COORDINATES: protein motif:HMM:NF018596.2
COORDINATES: similar to AA sequence:RefSeq:WP_006121888.1
COORDINATES: similar to AA sequence:RefSeq:WP_006121889.1
COORDINATES: similar to AA sequence:RefSeq:WP_002553184.1
COORDINATES: similar to AA sequence:RefSeq:WP_020322886.1
GO:0006750 - glutathione biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_020322885.1
GO:0016756 - glutathione gamma-glutamylcysteinyltransferase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0046938 - phytochelatin biosynthetic process [Evidence IEA]; GO:0010038 - response to metal ion [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014543222.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013036243.1
COORDINATES: similar to AA sequence:RefSeq:WP_006122098.1
GO:0036361 - racemase activity, acting on amino acids and derivatives [Evidence IEA]
aspartate/glutamate racemase family protein
COORDINATES: protein motif:HMM:NF019310.2