Haloarcula sinaiiensis ATCC 33800 plasmid pHsi139, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800
Microbiol Resour Announc 10 (34), e0061921 (2021)
Submitted (20-APR-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP073372.1.\nBacteria and source DNA available from ATCC 33800.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-MAR-2019\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Hsi_HGAP3_2_jobs_028_028947_data_polished\n _assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 167.79x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:44:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,624\nCDSs (total) :: 4,560\nGenes (coding) :: 4,447\nCDSs (with protein) :: 4,447\nGenes (RNA) :: 64\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 39 of 113\nPseudo Genes (incomplete) :: 82 of 113\nPseudo Genes (internal stop) :: 28 of 113\nPseudo Genes (multiple problems) :: 30 of 113\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: ab initio prediction:GeneMarkS-2+
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004971306.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012492.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: similar to AA sequence:RefSeq:WP_006651690.1
COORDINATES: similar to AA sequence:RefSeq:WP_008007694.1
COORDINATES: similar to AA sequence:RefSeq:WP_011225048.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966100.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030996.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966098.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190014.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190015.1
COORDINATES: similar to AA sequence:RefSeq:WP_007696293.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030760.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966089.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966088.1
COORDINATES: similar to AA sequence:RefSeq:WP_011225016.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030594.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190041.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966082.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004966820.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005532655.1
COORDINATES: similar to AA sequence:RefSeq:WP_006110624.1
COORDINATES: similar to AA sequence:RefSeq:WP_008388183.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966458.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966457.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189800.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524527.1
COORDINATES: similar to AA sequence:RefSeq:WP_014556661.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311410.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966779.1
COORDINATES: similar to AA sequence:RefSeq:WP_006828030.1
GO:0016301 - kinase activity [Evidence IEA]
type II toxin-antitoxin system death-on-curing family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_008313850.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030737.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533612.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313551.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004592306.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966057.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966056.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030731.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592310.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533891.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313885.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533600.1
COORDINATES: protein motif:HMM:TIGR02928.1
COORDINATES: similar to AA sequence:RefSeq:WP_004043318.1
GO:0004803 - transposase activity [Evidence IEA]
IS1595-like element ISHja1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_005533591.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533504.1
COORDINATES: protein motif:HMM:NF012234.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006078381.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182387.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966031.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966030.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313500.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533565.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592324.1
ArdC-like ssDNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005533880.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030704.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966418.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592328.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030657.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966223.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030698.1
COORDINATES: protein motif:HMM:NF024583.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020084.2
FIST C-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966420.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030695.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188962.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313416.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966206.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966204.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966202.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966200.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966197.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188968.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007188969.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004592346.1
COORDINATES: similar to AA sequence:RefSeq:WP_005533840.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966431.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030670.1
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011224987.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011224986.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966181.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313479.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966173.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313955.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014030680.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516568.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222227.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014052383.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008526969.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: similar to AA sequence:RefSeq:WP_008524439.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF014684.2
COORDINATES: protein motif:HMM:NF024799.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611983.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222276.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222285.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053459.1
COORDINATES: similar to AA sequence:RefSeq:WP_008893489.1
DUF2791 family P-loop domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008893490.1
COORDINATES: protein motif:HMM:NF013835.2
COORDINATES: protein motif:HMM:NF013777.2
winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_006090816.1
COORDINATES: similar to AA sequence:RefSeq:WP_004971299.1
COORDINATES: similar to AA sequence:RefSeq:WP_005537405.1
6-pyruvoyl tetrahydropterin synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004595531.1
COORDINATES: protein motif:HMM:NF024117.2