Haloarcula sinaiiensis ATCC 33800 plasmid pHsi204, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800
Microbiol Resour Announc 10 (34), e0061921 (2021)
Submitted (20-APR-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP073371.1.\nBacteria and source DNA available from ATCC 33800.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-MAR-2019\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Hsi_HGAP3_2_jobs_028_028947_data_polished\n _assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 167.79x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:44:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,624\nCDSs (total) :: 4,560\nGenes (coding) :: 4,447\nCDSs (with protein) :: 4,447\nGenes (RNA) :: 64\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 39 of 113\nPseudo Genes (incomplete) :: 82 of 113\nPseudo Genes (internal stop) :: 28 of 113\nPseudo Genes (multiple problems) :: 30 of 113\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011222336.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035611.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008313922.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004515887.1
orc1/cdc6 family replication initiation protein
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_007188055.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076611400.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007188137.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035722.1
COORDINATES: similar to AA sequence:RefSeq:WP_015233380.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010903158.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188619.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011572285.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006884331.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188623.1
IS200/IS605-like element ISHma12 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011222229.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188624.1
HVO_2072 family ArtA-dependent S-layer glycoprotein
COORDINATES: similar to AA sequence:RefSeq:WP_011222290.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007188625.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313828.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011222252.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013035031.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010890462.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966299.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965335.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_004517248.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004516630.1
COORDINATES: similar to AA sequence:RefSeq:WP_014039908.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966933.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289547.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011324502.1
COORDINATES: protein motif:HMM:NF024980.2
COORDINATES: protein motif:HMM:NF033545.0
COORDINATES: similar to AA sequence:RefSeq:WP_013035246.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592189.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189995.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222322.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222282.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189730.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222284.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222285.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532655.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488264.1
COORDINATES: similar to AA sequence:RefSeq:WP_006653536.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188168.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190868.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966895.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188698.1
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004966893.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004966892.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189718.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966889.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035120.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847077.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611118.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004965308.1
frameshifted; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004592200.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592162.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188107.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966882.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005538656.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966879.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966761.1
COORDINATES: similar to AA sequence:RefSeq:WP_007187621.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030573.1
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02540
COORDINATES: nucleotide motif:Rfam:14.4:RF01959
COORDINATES: similar to AA sequence:RefSeq:WP_007188884.1
ribosome biogenesis/translation initiation ATPase RLI
COORDINATES: similar to AA sequence:RefSeq:WP_006181027.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013035018.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612019.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
COORDINATES: similar to AA sequence:RefSeq:WP_004959228.1
PAS domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_004967124.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_015790261.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967122.1
COORDINATES: similar to AA sequence:RefSeq:WP_004515932.1
Replication protein A protects and stabilize the intermediate ssDNA that is generated by the unwinding action of a DNA helicase at the replication fork. In addition, SSBs prevent the formation of secondary structures by single-stranded template DNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222154.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189604.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967118.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967117.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189601.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189757.1
COORDINATES: protein motif:HMM:NF024583.2
GAF domain-containing sensor histidine kinase
COORDINATES: similar to AA sequence:RefSeq:WP_011223724.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007189773.1
COORDINATES: similar to AA sequence:RefSeq:WP_015788816.1
COORDINATES: similar to AA sequence:RefSeq:WP_008526184.1
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611983.1
COORDINATES: similar to AA sequence:RefSeq:WP_006180950.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008526189.1
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: similar to AA sequence:RefSeq:WP_004041622.1
COORDINATES: similar to AA sequence:RefSeq:WP_004041623.1
COORDINATES: similar to AA sequence:RefSeq:WP_007997464.1
COORDINATES: protein motif:HMM:NF020926.2
COORDINATES: similar to AA sequence:RefSeq:WP_013035684.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222246.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182387.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222276.1
IS5-like element ISHma11 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011223694.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
ISH6-like element ISHma5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_004967099.1
IS1595-like element ISHsi1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_007190675.1
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007190705.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190704.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190703.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190702.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190701.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190700.1
IS5-like element ISHma10 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012289545.1
COORDINATES: similar to AA sequence:RefSeq:WP_009377239.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967086.1
COORDINATES: similar to AA sequence:RefSeq:WP_015911446.1
IS1595-like element ISHsi3 family transposase
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007276461.1
COORDINATES: similar to AA sequence:RefSeq:WP_008308683.1
COORDINATES: similar to AA sequence:RefSeq:WP_049912812.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592164.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222288.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222291.1
COORDINATES: similar to AA sequence:RefSeq:WP_014052195.1
GO:0016787 - hydrolase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006432961.1
sugar phosphate isomerase/epimerase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432960.1
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
GO:0019700 - organic phosphonate catabolic process [Evidence IEA]
alpha-D-ribose 1-methylphosphonate 5-triphosphate diphosphatase
COORDINATES: similar to AA sequence:RefSeq:WP_006432959.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006432958.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432957.1
alpha-D-ribose 1-methylphosphonate 5-phosphate C-P-lyase PhnJ
COORDINATES: similar to AA sequence:RefSeq:WP_006432956.1
carbon-phosphorus lyase complex subunit PhnI
COORDINATES: similar to AA sequence:RefSeq:WP_006432955.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]
phosphonate C-P lyase system protein PhnH
COORDINATES: similar to AA sequence:RefSeq:WP_006432954.1
GO:0019634 - organic phosphonate metabolic process [Evidence IEA]; GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate C-P lyase system protein PhnG
COORDINATES: similar to AA sequence:RefSeq:WP_014556265.1
PhnD/SsuA/transferrin family substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006088681.1
phosphonate ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_011571824.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: similar to AA sequence:RefSeq:WP_006432950.1
COORDINATES: similar to AA sequence:RefSeq:WP_011571822.1
COORDINATES: similar to AA sequence:RefSeq:WP_006432948.1
COORDINATES: protein motif:HMM:NF013752.2
COORDINATES: similar to AA sequence:RefSeq:WP_007189968.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011222301.1
COORDINATES: similar to AA sequence:RefSeq:WP_014030754.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592168.1
COORDINATES: similar to AA sequence:RefSeq:WP_050032404.1
COORDINATES: protein motif:HMM:NF039815.1
COORDINATES: protein motif:HMM:NF038197.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189963.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222309.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189961.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612197.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222312.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188990.1
COORDINATES: similar to AA sequence:RefSeq:WP_004062803.1
COORDINATES: similar to AA sequence:RefSeq:WP_007188991.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222280.1
COORDINATES: similar to AA sequence:RefSeq:WP_010890432.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611936.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222320.1
COORDINATES: similar to AA sequence:RefSeq:WP_009378103.1
COORDINATES: similar to AA sequence:RefSeq:WP_004967013.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222324.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222325.1
COORDINATES: similar to AA sequence:RefSeq:WP_004594981.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222327.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222328.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222329.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611935.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053535.1
COORDINATES: protein motif:HMM:NF018933.2