Haloarcula sinaiiensis ATCC 33800 plasmid pHsi55, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800
Microbiol Resour Announc 10 (34), e0061921 (2021)
Submitted (20-APR-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP073370.1.\nBacteria and source DNA available from ATCC 33800.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-MAR-2019\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Hsi_HGAP3_2_jobs_028_028947_data_polished\n _assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 167.79x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:44:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,624\nCDSs (total) :: 4,560\nGenes (coding) :: 4,447\nCDSs (with protein) :: 4,447\nGenes (RNA) :: 64\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 39 of 113\nPseudo Genes (incomplete) :: 82 of 113\nPseudo Genes (internal stop) :: 28 of 113\nPseudo Genes (multiple problems) :: 30 of 113\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_011222322.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_007577627.1
COORDINATES: protein motif:HMM:NF012515.2
COORDINATES: similar to AA sequence:RefSeq:WP_008313841.1
COORDINATES: protein motif:HMM:NF037740.2
COORDINATES: similar to AA sequence:RefSeq:WP_005532655.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966820.1
COORDINATES: protein motif:HMM:NF024804.2
COORDINATES: similar to AA sequence:RefSeq:WP_011222262.1
COORDINATES: similar to AA sequence:RefSeq:WP_008313828.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_004966299.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222258.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222167.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222256.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189753.1
type IV pilin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_011222254.1
COORDINATES: protein motif:HMM:NF021897.2
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004966314.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189749.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222186.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222247.1
COORDINATES: similar to AA sequence:RefSeq:WP_008524550.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_011222246.1
COORDINATES: similar to AA sequence:RefSeq:WP_006088222.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532759.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222149.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966322.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222242.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189739.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189800.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189736.1
COORDINATES: similar to AA sequence:RefSeq:WP_018258830.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189735.1
COORDINATES: protein motif:HMM:NF036452.2
COORDINATES: similar to AA sequence:RefSeq:WP_011225055.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189733.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966261.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189730.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222282.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189728.1
COORDINATES: protein motif:HMM:TIGR00229.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011223724.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007189718.1
COORDINATES: similar to AA sequence:RefSeq:WP_007108464.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_014555220.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024352.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
TaqI-like C-terminal specificity domain-containing protein