Haloarcula sinaiiensis ATCC 33800 plasmid pHsi117, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Halobacteriales; Haloarculaceae; Haloarcula.
Complete Genome and Methylome Analysis of the Box-Shaped Halophilic Archaeon Haloarcula sinaiiensis ATCC 33800
Microbiol Resour Announc 10 (34), e0061921 (2021)
Submitted (20-APR-2021) Microbiology and Immunology, University of Maryland, 701 East Pratt Street, Baltimore, MD 21202, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP073367.1.\nBacteria and source DNA available from ATCC 33800.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: 13-MAR-2019\nAssembly Method :: HGAP v. 2.3.0\nAssembly Name :: Hsi_HGAP3_2_jobs_028_028947_data_polished\n _assembly\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 167.79x\nSequencing Technology :: PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/20/2023 04:44:42\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,624\nCDSs (total) :: 4,560\nGenes (coding) :: 4,447\nCDSs (with protein) :: 4,447\nGenes (RNA) :: 64\nrRNAs :: 5, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 4, 4 (5S, 16S, 23S)\ntRNAs :: 49\nncRNAs :: 2\nPseudo Genes (total) :: 113\nCDSs (without protein) :: 113\nPseudo Genes (ambiguous residues) :: 0 of 113\nPseudo Genes (frameshifted) :: 39 of 113\nPseudo Genes (incomplete) :: 82 of 113\nPseudo Genes (internal stop) :: 28 of 113\nPseudo Genes (multiple problems) :: 30 of 113\nCRISPR Arrays :: 2\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:NF040120.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF024248.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF027245.2
COORDINATES: protein motif:HMM:NF024583.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004517237.1
COORDINATES: similar to AA sequence:RefSeq:WP_015301184.1
class I SAM-dependent DNA methyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_010902029.1
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018258731.1
type I restriction endonuclease subunit R
COORDINATES: similar to AA sequence:RefSeq:WP_010902031.1
SprT family zinc-dependent metalloprotease
COORDINATES: protein motif:HMM:NF016362.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011324502.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011224154.1
COORDINATES: similar to AA sequence:RefSeq:WP_012807990.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216157.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_004516119.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_008455043.1
COORDINATES: similar to AA sequence:RefSeq:WP_008455041.1
COORDINATES: similar to AA sequence:RefSeq:WP_007344381.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
saccharopine dehydrogenase NADP-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004044077.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004965093.1
COORDINATES: similar to AA sequence:RefSeq:WP_015763125.1
COORDINATES: similar to AA sequence:RefSeq:WP_008310652.1
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007188093.1
COORDINATES: similar to AA sequence:RefSeq:WP_004216257.1
COORDINATES: similar to AA sequence:RefSeq:WP_012289741.1
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008524572.1
COORDINATES: similar to AA sequence:RefSeq:WP_014053212.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007189614.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222322.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966725.1
COORDINATES: similar to AA sequence:RefSeq:WP_006181027.1
COORDINATES: protein motif:HMM:NF014156.2
COORDINATES: protein motif:HMM:NF013757.2
COORDINATES: similar to AA sequence:RefSeq:WP_009376775.1
COORDINATES: similar to AA sequence:RefSeq:WP_015326993.1
COORDINATES: similar to AA sequence:RefSeq:WP_007997753.1
COORDINATES: similar to AA sequence:RefSeq:WP_009376789.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111709.1
GO:0008869 - galactonate dehydratase activity [Evidence IEA]
GO:0009063 - amino acid catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_007980986.1
COORDINATES: similar to AA sequence:RefSeq:WP_007983152.1
COORDINATES: similar to AA sequence:RefSeq:WP_007190008.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222258.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966299.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_004965332.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_011222262.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966820.1
COORDINATES: similar to AA sequence:RefSeq:WP_005532655.1
COORDINATES: similar to AA sequence:RefSeq:WP_006111645.1
COORDINATES: similar to AA sequence:RefSeq:WP_004592288.1
COORDINATES: protein motif:HMM:NF036897.2
COORDINATES: similar to AA sequence:RefSeq:WP_004045801.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189730.1
COORDINATES: similar to AA sequence:RefSeq:WP_004516568.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965308.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966886.1
COORDINATES: similar to AA sequence:RefSeq:WP_011222285.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311451.1
COORDINATES: similar to AA sequence:RefSeq:WP_008311452.1
COORDINATES: similar to AA sequence:RefSeq:WP_004966761.1
COORDINATES: similar to AA sequence:RefSeq:WP_004057214.1
COORDINATES: similar to AA sequence:RefSeq:WP_004057215.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965268.1
GO:0008199 - ferric iron binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004965265.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189795.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189794.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189793.1
sulfite exporter TauE/SafE family protein
COORDINATES: similar to AA sequence:RefSeq:WP_007697050.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189791.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965245.1
b(o/a)3-type cytochrome-c oxidase subunit 1
COORDINATES: similar to AA sequence:RefSeq:WP_004965242.1
IS200/IS605-like element ISHsi2 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011322581.1
COORDINATES: similar to AA sequence:RefSeq:WP_006182441.1
COORDINATES: similar to AA sequence:RefSeq:WP_004598265.1
COORDINATES: similar to AA sequence:RefSeq:WP_006113174.1
cytochrome d ubiquinol oxidase subunit II
COORDINATES: similar to AA sequence:RefSeq:WP_004965225.1
COORDINATES: similar to AA sequence:RefSeq:WP_004965224.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189785.1
COORDINATES: similar to AA sequence:RefSeq:WP_004596084.1
COORDINATES: similar to AA sequence:RefSeq:WP_007189783.1
COORDINATES: similar to AA sequence:RefSeq:WP_007993908.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006183540.1
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: similar to AA sequence:RefSeq:WP_009488135.1