Methylorubrum extorquens DM4 plasmid p2METDI, complete sequence.
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Methylobacteriaceae; Methylorubrum.
Submitted (09-OCT-2017) Genoscope - CEA (Commissariat a l'energie atomique et aux energies alternatives) : BP 191 91006 EVRY cedex - FRANCE (E-mail : seqref@genoscope.cns.fr - Web : www.genoscope.cns.fr)
REFSEQ INFORMATION: The reference sequence is identical to\nFP103044.1.\nAnnotation results relative to BLAST similarities, COG\nassignations, enzymatic function prediction (PRIAM software), TMHMM\nand SignalP predictions, and synteny conservation (Syntonizer\nsoftware) are available in the MicroScope annotation system\nhttp://www.genoscope.cns.fr/agc/microscope.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/16/2023 02:38:24\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,821\nCDSs (total) :: 5,744\nGenes (coding) :: 5,561\nCDSs (with protein) :: 5,561\nGenes (RNA) :: 77\nrRNAs :: 5, 5, 5 (5S, 16S, 23S)\ncomplete rRNAs :: 5, 5, 5 (5S, 16S, 23S)\ntRNAs :: 58\nncRNAs :: 4\nPseudo Genes (total) :: 183\nCDSs (without protein) :: 183\nPseudo Genes (ambiguous residues) :: 0 of 183\nPseudo Genes (frameshifted) :: 56 of 183\nPseudo Genes (incomplete) :: 147 of 183\nPseudo Genes (internal stop) :: 34 of 183\nPseudo Genes (multiple problems) :: 46 of 183\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methylobacterium dichloromethanicum
COORDINATES: similar to AA sequence:RefSeq:WP_009466936.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
bifunctional enoyl-CoA hydratase/phosphate acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013069069.1
GO:0008776 - acetate kinase activity [Evidence IEA]
GO:0006083 - acetate metabolic process [Evidence IEA]; GO:0006113 - fermentation [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_003598531.1
COORDINATES: similar to AA sequence:RefSeq:WP_019867088.1
COORDINATES: protein motif:HMM:NF023113.2
COORDINATES: similar to AA sequence:RefSeq:WP_019903082.1
COORDINATES: similar to AA sequence:RefSeq:WP_012753468.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017482494.1
COORDINATES: similar to AA sequence:RefSeq:WP_017482495.1
COORDINATES: similar to AA sequence:RefSeq:WP_018867178.1
COORDINATES: similar to AA sequence:RefSeq:WP_012753462.1
COORDINATES: similar to AA sequence:RefSeq:WP_017482499.1
COORDINATES: similar to AA sequence:RefSeq:WP_012753460.1
COORDINATES: similar to AA sequence:RefSeq:WP_012319572.1
IS256-like element ISMex3 family transposase
COORDINATES: protein motif:HMM:NF024830.2
COORDINATES: similar to AA sequence:RefSeq:WP_014342017.1
COORDINATES: similar to AA sequence:RefSeq:WP_014342016.1
COORDINATES: similar to AA sequence:RefSeq:WP_012316969.1
COORDINATES: similar to AA sequence:RefSeq:WP_012316970.1
COORDINATES: protein motif:HMM:NF041492.1
COORDINATES: similar to AA sequence:RefSeq:WP_015951883.1
endonuclease/exonuclease/phosphatase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012779294.1
GO:0005886 - plasma membrane [Evidence IEA]
GO:0015105 - arsenite transmembrane transporter activity [Evidence IEA]
GO:0046685 - response to arsenic-containing substance [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012455866.1
GO:0008794 - arsenate reductase (glutaredoxin) activity [Evidence IEA]
This arsenate reductase requires both glutathione and glutaredoxin to convert arsenate to arsenite, after which the efflux transporter formed by ArsA and ArsB can extrude the arsenite from the cell, providing resistance; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_010682456.1
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012255058.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: similar to AA sequence:RefSeq:WP_012253453.1
GO:0003674 - molecular_function [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_076611370.1
GO:0004803 - transposase activity [Evidence IEA]
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS3-like element ISMex5 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076612217.1
IS630-like element ISMex18 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_076611756.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - DNA transposition [Evidence IEA]
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_020095942.1
COORDINATES: similar to AA sequence:RefSeq:WP_015822506.1
COORDINATES: similar to AA sequence:RefSeq:WP_014290156.1
GO:0004318 - enoyl-[acyl-carrier-protein] reductase (NADH) activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019964770.1