Legionella longbeachae NSW150 plasmid pLLO, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Legionellales; Legionellaceae; Legionella.
Analysis of the Legionella longbeachae genome and transcriptome uncovers unique strategies to cause Legionnaires' disease
Submitted (06-JAN-2010) Rusniok C., Unite de Biologie des Bacteries Intracellulaires, Institut Pasteur, 25, 28 rue du Docteur Roux, 75015, FRANCE
REFSEQ INFORMATION: The reference sequence is identical to\nFN650141.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 11:22:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,607\nCDSs (total) :: 3,545\nGenes (coding) :: 3,483\nCDSs (with protein) :: 3,483\nGenes (RNA) :: 62\nrRNAs :: 4, 4, 4 (5S, 16S, 23S)\ncomplete rRNAs :: 4, 4, 4 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 62\nCDSs (without protein) :: 62\nPseudo Genes (ambiguous residues) :: 0 of 62\nPseudo Genes (frameshifted) :: 18 of 62\nPseudo Genes (incomplete) :: 44 of 62\nPseudo Genes (internal stop) :: 28 of 62\nPseudo Genes (multiple problems) :: 21 of 62\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_003637170.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003637169.1
ParB N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003637168.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637166.1
GO:0015333 - peptide:proton symporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003637165.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637164.1
COORDINATES: similar to AA sequence:RefSeq:WP_011212465.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235295.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450452.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235297.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450448.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347307.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450445.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655325.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347308.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_019235302.1
TraE/TraK family type IV conjugative transfer system protein
COORDINATES: similar to AA sequence:RefSeq:WP_013347310.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_013347311.1
COORDINATES: similar to AA sequence:RefSeq:WP_013347313.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235307.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_019235308.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_004450424.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_004450422.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_010655336.1
type-F conjugative transfer system mating-pair stabilization protein TraN
putative pilus assembly and synthesis protein
COORDINATES: similar to AA sequence:RefSeq:WP_004450417.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_010655338.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_010655339.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235315.1
conjugal transfer protein TraG N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_004450411.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_019235317.1
conjugative transfer relaxase/helicase TraI
COORDINATES: similar to AA sequence:RefSeq:WP_019235318.1
COORDINATES: similar to AA sequence:RefSeq:WP_019235319.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655346.1
COORDINATES: similar to AA sequence:RefSeq:WP_006871342.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_013347331.1
RNA-binding S4 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010653009.1
COORDINATES: similar to AA sequence:RefSeq:WP_015205085.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_009547302.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_004450378.1
COORDINATES: similar to AA sequence:RefSeq:WP_011947301.1
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003631568.1
COORDINATES: similar to AA sequence:RefSeq:WP_015961565.1
COORDINATES: similar to AA sequence:RefSeq:WP_010655385.1
GO:0018454 - acetoacetyl-CoA reductase activity [Evidence IEA]
GO:0042619 - poly-hydroxybutyrate biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011216270.1
GO:0015385 - sodium:proton antiporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003631564.1
transporter substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_003631562.1
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: similar to AA sequence:RefSeq:WP_006707191.1
COORDINATES: similar to AA sequence:RefSeq:WP_004450534.1
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF016281.2
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004450541.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013347338.1
COORDINATES: similar to AA sequence:RefSeq:WP_002809066.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637186.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637185.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637183.1
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003637182.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637181.1
helix-turn-helix domain-containing GNAT family N-acetyltransferase
COORDINATES: similar to AA sequence:RefSeq:WP_013347342.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010946964.1
COORDINATES: similar to AA sequence:RefSeq:WP_003637178.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003637177.1
COORDINATES: similar to AA sequence:RefSeq:WP_010653574.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010946962.1
GO:0006974 - cellular response to DNA damage stimulus [Evidence IEA]; GO:0018142 - protein-DNA covalent cross-linking [Evidence IEA]
frameshifted; internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
SOS response-associated peptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003637171.1