Haloplanus aerogenes strain JCM 16430 plasmid pJCM16430-01, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Halobacteria; Haloferacales; Haloferacaceae; Haloplanus.
Genome sequences of Haloplanus aerogenes JCM 16430T
Submitted (18-JUL-2018) Microbiology and Functionality Research Group, World Institute of Kimchi, 86, Kimchi-ro, Nam-gu, Gwangju, Gwangju 61755, South Korea
REFSEQ INFORMATION: The reference sequence is identical to\nCP034146.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: PacBio SMRT Analysis v. 2.3.0\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 277.77x\nSequencing Technology :: PacBio\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 04/19/2023 00:59:25\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,665\nCDSs (total) :: 3,606\nGenes (coding) :: 3,575\nCDSs (with protein) :: 3,575\nGenes (RNA) :: 59\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 51\nncRNAs :: 2\nPseudo Genes (total) :: 31\nCDSs (without protein) :: 31\nPseudo Genes (ambiguous residues) :: 0 of 31\nPseudo Genes (frameshifted) :: 10 of 31\nPseudo Genes (incomplete) :: 23 of 31\nPseudo Genes (internal stop) :: 3 of 31\nPseudo Genes (multiple problems) :: 5 of 31\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_008528303.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008528304.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_006183538.1
COORDINATES: similar to AA sequence:RefSeq:WP_006185974.1
orc1/cdc6 family replication initiation protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488128.1
COORDINATES: protein motif:HMM:NF012955.2
COORDINATES: similar to AA sequence:RefSeq:WP_009488163.1
COORDINATES: similar to AA sequence:RefSeq:WP_008456893.1
COORDINATES: protein motif:HMM:NF012572.2
COORDINATES: similar to AA sequence:RefSeq:WP_008441549.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008237 - metallopeptidase activity [Evidence IEA]
SprT family zinc-dependent metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_014556071.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0009035 - type I site-specific deoxyribonuclease activity [Evidence IEA]
type I restriction endonuclease subunit R
COORDINATES: protein motif:HMM:NF013579.2
GO:0006304 - DNA modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015301184.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
class I SAM-dependent DNA methyltransferase
COORDINATES: protein motif:HMM:NF024212.2
helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488154.1
COORDINATES: similar to AA sequence:RefSeq:WP_015762108.1
COORDINATES: similar to AA sequence:RefSeq:WP_015310229.1
COORDINATES: similar to AA sequence:RefSeq:WP_004048613.1
transcription initiation factor IIB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488150.1
COORDINATES: similar to AA sequence:RefSeq:WP_011572759.1
COORDINATES: similar to AA sequence:RefSeq:WP_008608490.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_008322123.1
COORDINATES: similar to AA sequence:RefSeq:WP_008847080.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF013629.2
winged helix-turn-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_009488135.1
COORDINATES: similar to AA sequence:RefSeq:WP_009488134.1