Erwinia tracheiphila strain BHKY plasmid pETR004-b, complete sequence.
type: Entry
definition: Erwinia tracheiphila strain BHKY plasmid pETR004-b, complete sequence.
sequence version: NZ_CP089933.1
sequence date: 2022-12-08
sequence: sequence
division: CON
label: NZ_CP089933.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN24011481
keyword: RefSeq
source: Erwinia tracheiphila
organism: Erwinia tracheiphila
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Erwiniaceae; Erwinia.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP089933.1.\nBacteria and source DNA available from Gwyn Beattie Lab, Iowa State\nUniversity, Department of Plant Pathology and Microbiology, 1344\nAdvanced Teaching & Research Bldg, 2213 Pammel Dr, Ames, IA, USA.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Date :: NOV-2021\nAssembly Method :: Flye v. 2.9; Raven v. 1.6.1; Unicycler v.\n 0.4.9; Miniasm v. 0.3; Minipolish v.\n 0.1.3; NextDenovo v. 2.5.0; NextPolish v.\n 1.4.0; Trycycler v. 0.4.1; Racon v.\n 1.6.1; Medaka v. 1.4.1; SMRTLink Arrow v.\n 7.0.1; Circlator v. 1.5.5\nAssembly Name :: BHKY_assembly_2021\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 71.0x\nSequencing Technology :: Oxford Nanopore MinION; PacBio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/08/2022 10:01:55\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,143\nCDSs (total) :: 5,054\nGenes (coding) :: 4,223\nCDSs (with protein) :: 4,223\nGenes (RNA) :: 89\nrRNAs :: 7, 6, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 7, 6, 6 (5S, 16S, 23S)\ntRNAs :: 65\nncRNAs :: 5\nPseudo Genes (total) :: 831\nCDSs (without protein) :: 831\nPseudo Genes (ambiguous residues) :: 0 of 831\nPseudo Genes (frameshifted) :: 465 of 831\nPseudo Genes (incomplete) :: 474 of 831\nPseudo Genes (internal stop) :: 290 of 831\nPseudo Genes (multiple problems) :: 339 of 831\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 37808
topology: circular
so has quality: SO_0000988
location: 1..37808
location: region:1-37808:1
RO_0002162: 65700

NZ_CP089933
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN24011481
type: BioSample
SIO_000068: biosample

1
title: Complete Genome Sequences of Four Strains of Erwinia tracheiphila, a bacterial plant pathogen with a highly complex genome
author: LaSarre, B.
author: Olawole, O.I.
author: Paulsen, A.
author: Halverson, L.J.
author: Gleason, M.L.
author: Beattie, G.A.
journal: Unpublished

2
title: Direct Submission
author: LaSarre, B.
author: Olawole, O.I.
author: Beattie, G.A.
journal: Submitted (16-DEC-2021) Plant Pathology and Microbiology, Iowa State University, 2213 Pammel Dr, Ames, IA 50011, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37808:1
position: 37808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-37808:1:source
so part of: sequence
organism: Erwinia tracheiphila
mol type: genomic DNA
strain: BHKY
isolation source: Infected agricultural plant
host: Cucurbita moschata
plasmid: pETR004-b
country: USA: Kentucky
collection date: 2010

65700
type: Taxonomy
SIO_000068: taxonomy

LU633_RS25505
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
gene: repA
locus tag: LU633_RS25505
old locus tag: LU633_25505
so part of: sequence
location: 1..864
location: region:1-864:1
so has part: feature:1-864:1:exon
subclass of: SO_0000010

position:864:1
position: 864
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1-864:1:exon

LU633_RS25505
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
gene: repA
locus tag: LU633_RS25505
old locus tag: LU633_25505
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002225475.1
GO process: GO:0006276 - plasmid maintenance [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: incFII family plasmid replication initiator RepA
translation: MADAQALFTHYRQVKNPNPEFTPREGKKTLPFCRKLMAKAEGFTSRFDFSMHVAFARSLGVRHRMPPLLRRRAIDALLQGLCFHYDPLANRVQRSITNLAIECGLATESKNGNLSITRATRALKFMAELGLITYQTEYDPQIGCNIPTDITFTPALFSALDVSDVAVVAARRSRVEWENQQREKQRLPRLDMDELIAKAWRFVRERFRSYQSERKSHGLKRARARRDADRNRRDIETIVKRQLTREIAEGRFTGNLDAVRREQARRVKERMLMSRGNNYTRLATATT
SIO_010081: LU633_RS25505
subclass of: SO_0000673
so part of: LU633_RS25505
location: 1..864
location: region:1-864:1
so has part: feature:1-864:1:exon

WP_016193194.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1-864:1:exon

LU633_RS25510
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25510
old locus tag: LU633_25510
so part of: sequence
location: 2028..2678
location: region:2028-2678:1
so has part: feature:2028-2678:1:exon
subclass of: SO_0000010

position:2028:1
position: 2028
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2678:1
position: 2678
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2028-2678:1:exon

LU633_RS25510
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25510
old locus tag: LU633_25510
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012592917.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: AAA family ATPase
translation: MILTIANTKGGVGKSTLAVNIAVERARLGKRVWLVDGDRQGSSQTAILIRSEAGLEPGLACSHFPDGPILRTQVLQQKSNFDEVIIECGGRDSTAMRAALTLTDILVVPFVPGSFEVWAMEDVVNLVRDARSVRDGLTAFSLLNRADPNPRSNDNADMLDAMREYNEDIQLLDHTIRQRKVFAAAAGSGRSVSELKLRTHEKAAKTELDTLVSILF
SIO_010081: LU633_RS25510
subclass of: SO_0000673
so part of: LU633_RS25510
location: 2028..2678
location: region:2028-2678:1
so has part: feature:2028-2678:1:exon

WP_016193196.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2028-2678:1:exon

LU633_RS25515
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25515
old locus tag: LU633_25515
so part of: sequence
location: 2718..2999
location: region:2718-2999:1
so has part: feature:2718-2999:1:exon
subclass of: SO_0000010

position:2718:1
position: 2718
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2999:1
position: 2999
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2718-2999:1:exon

LU633_RS25515
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25515
old locus tag: LU633_25515
inference: COORDINATES: protein motif:HMM:NF013561.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CopG family transcriptional regulator
translation: MAITRKPVVKAEPVDTISNFINQAPDGIKSETPPEKKGVVKGQRQQITVTFDPDVIELLDIMSTEEGVSRAALIRMAVKQLITRGTTVGGTNQ
SIO_010081: LU633_RS25515
subclass of: SO_0000673
so part of: LU633_RS25515
location: 2718..2999
location: region:2718-2999:1
so has part: feature:2718-2999:1:exon

WP_016193197.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2718-2999:1:exon

LU633_RS25520
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25520
old locus tag: LU633_25520
so part of: sequence
location: complement(3416..4630)
location: region:3416-4630:-1
so has part: feature:3416-4630:-1:exon
subclass of: SO_0000010

position:3416:-1
position: 3416
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4630:-1
position: 4630
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3416-4630:-1:exon

LU633_RS25520
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25520
old locus tag: LU633_25520
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004144477.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS91 family transposase
translation: MYIPRPAKLLFTTDDAWNRYMDKHGDTLSPWTVLCVERMLACGTAAMGVKRYCCASPDCTHTRFFCQTCKSKGCSSCGHKATEQWITEQQQILPDCDWQHITFTMPHLLWPFFNNNWPLLNALFRAATRAMLRWARKQGVEVGIFCALHTYGRQLNQHPHIHLSVTRGGLDIKHGVWRDLFFKKHAVEEIWRGAVIRLLRHSYDLINPGRLPGLGHIHDKKQWLRYLQAQYGRRWKVHFAKKTRGAWRSVKYLGRYLKRPPVSAAKLRHYSGGAVVHHYYDHRTQQYRQQTLTQEDMIGRYISHIPAKHFKMVRYYGFLSNRKRGSLLPKVYEALEMEARKKPEKPGFAALMKEFLRTDPYKCILCGNRLRFSSAQAGRHASELVAERLHNIDRKRWLLAQTAG
SIO_010081: LU633_RS25520
subclass of: SO_0000673
so part of: LU633_RS25520
location: complement(3416..4630)
location: region:3416-4630:-1
so has part: feature:3416-4630:-1:exon

WP_046371879.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3416-4630:-1:exon

LU633_RS25525
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25525
old locus tag: LU633_25525
so part of: sequence
location: complement(4639..4779)
location: region:4639-4779:-1
so has part: feature:4639-4779:-1:exon
subclass of: SO_0000010

position:4639:-1
position: 4639
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4779:-1
position: 4779
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4639-4779:-1:exon

LU633_RS25525
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25525
old locus tag: LU633_25525
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPADVFIIATESGMLPVTFAPWDKHTDNWADDCDDWHYNTGATAER
SIO_010081: LU633_RS25525
subclass of: SO_0000673
so part of: LU633_RS25525
location: complement(4639..4779)
location: region:4639-4779:-1
so has part: feature:4639-4779:-1:exon

WP_161796965.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4639-4779:-1:exon

LU633_RS25530
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25530
old locus tag: LU633_25530
so part of: sequence
location: 5343..8054
location: region:5343-8054:1
so has part: feature:5343-8054:1:exon
subclass of: SO_0000010

position:5343:1
position: 5343
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8054:1
position: 8054
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5343-8054:1:exon

LU633_RS25530
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25530
old locus tag: LU633_25530
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPVSALQHRVTAGAYQNKLHDNIKGNFTTQAQSLHSDRSANPDEIHHLGRSINRVVNSHEELSRPSYQTTSPRQGIAAPLLMLLSQVRLDGIPVSSTTDIPAFTSERSMSSPVSRDTAHSDNSGNGFSTMLSPVANALYETGKFIARHDPLRFPGADAATLPGEGVNSITATDIAKDINESRYLSGDIGKKIIEIVSTIERREDLIAIKNVINKLNGIATNAEDKYPSDTTEKNIDHLIYLIENSDGIISDFEIKHHQNSFCNQLKMQLENYIKTAVDITDKKDALKFKEYIGKIPSLKLTPDSRGEGYEPVESQVASNLVRSVYWFQNDDGYSAAHGLRYEAHKAMLTYIIAEKGLGDLNKLPDNWYKGDEALRLFSILYRDLENNLKNKGETYLIRSARQFYSSLRGSYSGDSTLEIKGLEKKTLSSYSDKDKLLALRYYFNKPVDIEYHQETNKQRFLKIVDFVLTLQSISAVMRPKTSSGGNHRHHHNGQRTVTSTIYGKQPGGKTRNFRLKINKKNNELVITPTKGVGLKKQGLINRKNKEILSNRNKISDVKFKSSKGKVSNKFQPTVSREVRDKIMPNMHAENIDPKKLSTPNDMGLMRHENGRKYIKIDKSYIEVKEREGYFFIKKNGGGVINIEYRNNEIHLESHRHRLARIKYQGLSGRMTRPDQMIANRLKVSEVKAKEILSKYEFPEGIQLYTEGTFAMSVRDTGTFPEWAKSFKKIDANDYVSPYRESKVMDNGLHGFNGKSNYFYRVDNTPPETVLKNGFKASEDYTAISKMLPEDMDGVIVAESLEGARRYQTINKNSHIYRIDGKNVEGVSLRDNLYTNEKGLNDFLGEPLAKKHATLESLAEDTNGAIYLDEVHLRKETISPSAISIVHPHEISGDLSSGPWQKYL
SIO_010081: LU633_RS25530
subclass of: SO_0000673
so part of: LU633_RS25530
location: 5343..8054
location: region:5343-8054:1
so has part: feature:5343-8054:1:exon

WP_016193170.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5343-8054:1:exon

LU633_RS25535
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25535
old locus tag: LU633_25535
so part of: sequence
location: 8135..8326
location: region:8135-8326:1
so has part: feature:8135-8326:1:exon
subclass of: SO_0000010

position:8135:1
position: 8135
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:8326:1
position: 8326
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8135-8326:1:exon

LU633_RS25535
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25535
old locus tag: LU633_25535
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: IS3 family transposase
translation: MAGSRLQPHEWLLLVPQPTRADMKQDVATYIRHYNLERNHAADGGLSPALYERLTEKKVSGLN
SIO_010081: LU633_RS25535
subclass of: SO_0000673
so part of: LU633_RS25535
location: 8135..8326
location: region:8135-8326:1
so has part: feature:8135-8326:1:exon

WP_016193171.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8135-8326:1:exon

LU633_RS25540
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25540
old locus tag: LU633_25540
so part of: sequence
location: 8784..9044
location: region:8784-9044:1
so has part: feature:8784-9044:1:exon
subclass of: SO_0000010

position:8784:1
position: 8784
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9044:1
position: 9044
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:8784-9044:1:exon

LU633_RS25540
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25540
old locus tag: LU633_25540
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000510385.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGHYTIRTNDEEDQVIRKAQEATGMASASKAFMTAILELQRNRDEIAQLWHSLAQEKARCQELVSSVNQFRSSLNTMFELADNGKS
SIO_010081: LU633_RS25540
subclass of: SO_0000673
so part of: LU633_RS25540
location: 8784..9044
location: region:8784-9044:1
so has part: feature:8784-9044:1:exon

WP_016193173.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:8784-9044:1:exon

LU633_RS25545
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25545
old locus tag: LU633_25545
so part of: sequence
location: 9331..9567
location: region:9331-9567:1
so has part: feature:9331-9567:1:exon
subclass of: SO_0000010

position:9331:1
position: 9331
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:9567:1
position: 9567
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9331-9567:1:exon

LU633_RS25545
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25545
old locus tag: LU633_25545
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001361845.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: damage-inducible type I toxin DinQ
translation: MNRLKVLAKTSGGAGFSALVGGELSIPNHIETAVTGSVRASSGVLSPFMEKRMGAFIDKAIMVLRVLIALLELIRMFF
SIO_010081: LU633_RS25545
subclass of: SO_0000673
so part of: LU633_RS25545
location: 9331..9567
location: region:9331-9567:1
so has part: feature:9331-9567:1:exon

WP_016193174.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9331-9567:1:exon

LU633_RS25550
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25550
old locus tag: LU633_25550
so part of: sequence
location: 9726..10766
location: region:9726-10766:1
so has part: feature:9726-10766:1:exon
subclass of: SO_0000010

position:9726:1
position: 9726
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10766:1
position: 10766
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:9726-10766:1:exon

LU633_RS25550
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25550
old locus tag: LU633_25550
inference: COORDINATES: similar to AA sequence:RefSeq:WP_014543172.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS481 family transposase
translation: MLHTNNPIIKHKAGLLNLAEELGNVSKACKIMGVSRDTFYRYQELAAEGGIDALINQNRRVPNLKNRADEATERAVVEYAVEFPAHGQHRTSNELRKKGVFISGSGVRSIWQRHDLENFRKRLKALEEKVAREGIVLTDAQIAALEKKAHDDEASGEIETAHPGYLGSQDTFYVGNLKGVGRIYQQTFVDTYSKVAHCKLYTSKTPITAADLLNDRVLPFYEAQGLPMLRILTDRGTEYCGKVEQHDYQLYLAINDIDHTKTKAMSPQTNGICERFHKTILQDFYQVTFRKKLYEDLESLQTDLDNGLWHYNNERTHQGKMCCGRTPMATLLDGKRVWAEKNLNQM
SIO_010081: LU633_RS25550
subclass of: SO_0000673
so part of: LU633_RS25550
location: 9726..10766
location: region:9726-10766:1
so has part: feature:9726-10766:1:exon

WP_046372128.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:9726-10766:1:exon

LU633_RS25555
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25555
old locus tag: LU633_25555
so part of: sequence
location: complement(11229..14537)
location: region:11229-14537:-1
so has part: feature:11229-14537:-1:exon
subclass of: SO_0000010

position:11229:-1
position: 11229
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14537:-1
position: 14537
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11229-14537:-1:exon

LU633_RS25555
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25555
old locus tag: LU633_25555
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016192563.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: autotransporter outer membrane beta-barrel domain-containing protein
translation: MKKLFMTAALTGLLASNNSYAGESYLVYSPQNIAVFQVRFFDVGDGPFMPDWPQPFESTWALGQQQKEKILDAMRYWAEVITPRPGQLPAIINVGTFDVNNAAGSSDSVNNGVISLTQLQGALSGIDTGELTFGSHAQFIMGKMDFDDIPYVPAQLPRTGKTDLVSVAVHELAHGLGISNMVTDLQGEGTFTPAFDTQPFGSWTSHLRDDHGNPARPGQVILCNGCNNPWDPQGFDVRLDKGYFTGRHVDEVLAGAMPGVPVKMLGDGGSVDDNYMSHIELKNSMMSHQGYRNYTTFMEAELALLQDMGYQIDRRNFFGFSLYGNGQTLINRNGYFLRNQQGDGYLAGQYNTATQGVGLHVYGSDNRIFQQADLLTQGAGGAGIRIDGQNNTLNIEPGTRVYADGLNGRGVMFTYGKQHNLIQRGDIQALGANGVAISFDFGNNLLGNEADYRGSWLHIVDGYNDALLPELQGSLVDNADISGRVAGKGAAIYISPNALVGNINILNGTRLEGDIFSDYAQRDAYGQQRLTQLTFGRKASAHGQATDGADSDFSFTYRGNIEGINNLALNAHGGKTSLNGDFQIYSMTIAPGAILSGNGSYTLNEEGRFVNNGILAPGNSLGQINVTGAYQQGDTGQLLLEVDGRGGHDTLRVDGHAQFNGQLTFAPQPDWYAANWRLDSQDLLKTNSYSGKFSAVNSLLRSPTLALQTTPLGENGWQLSMLRASNAYSRYAQDDNARQVGQALDKIVAVADSDIQPLYSTLDFSATDGGSISNALQQLSAAAYSAMFASSLHREQQITRIIGGPNPVVTPKQLAEGEWRSFAIPFGGGFWQQRQGGSVGYDASSYGIVFGAEKTNEQDRNWIYGFHGAVSGQSVTVKSPETANGKTTAFDLGIHARYGVERPEGMYLFGNGRFGIEDSWLDRNIHVETYGASYHASWTGLSSSLTAGGGYRWALNDNMSAGPITSLNYTTLHRPGVKESGNDGSRLMLGAETFDSLRSSIGMNGNWNLPLASGASIAAELQLTWDHELLDGNVVQQASFANYRSTGFSSRNQVTGRDALGVKAGMSYKINTDVELGIGIESELFRSGYDSIAGNLSATWRF
SIO_010081: LU633_RS25555
subclass of: SO_0000673
so part of: LU633_RS25555
location: complement(11229..14537)
location: region:11229-14537:-1
so has part: feature:11229-14537:-1:exon

WP_016193188.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11229-14537:-1:exon

LU633_RS25560
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25560
old locus tag: LU633_25560
so part of: sequence
location: complement(14647..15225)
location: region:14647-15225:-1
so has part: feature:14647-15225:-1:exon
subclass of: SO_0000010

position:14647:-1
position: 14647
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:15225:-1
position: 15225
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14647-15225:-1:exon

LU633_RS25560
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25560
old locus tag: LU633_25560
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004937746.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MRLFGYARVSTSQQSLDIQVKALKEAGVKANRIFTDKVSGSSTDREGLGLLRMKVEEGDVILVKKLDRLGRDTADMIQLIKEFDAQGVAVRFIDDGISTDGEMGQMVVTILSAVAQAERRRILERTNEGREEAKLKGIKFGRKRTVDRNVVLALYQKGNGATEIARQLSIARSTVYKILEDETVAAAGHLFL
SIO_010081: LU633_RS25560
subclass of: SO_0000673
so part of: LU633_RS25560
location: complement(14647..15225)
location: region:14647-15225:-1
so has part: feature:14647-15225:-1:exon

WP_016193187.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14647-15225:-1:exon

LU633_RS25565
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25565
old locus tag: LU633_25565
so part of: sequence
location: 15389..18394
location: region:15389-18394:1
so has part: feature:15389-18394:1:exon
subclass of: SO_0000010

position:15389:1
position: 15389
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:18394:1
position: 18394
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15389-18394:1:exon

LU633_RS25565
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25565
old locus tag: LU633_25565
inference: COORDINATES: similar to AA sequence:RefSeq:WP_032495017.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: Tn3 family transposase
translation: MPVDFLTTEQTESYGRFTGEPDELQLARYFHLDEADKEFIGKSRGDHNRLGIALQIGCVRFLGTFLTDMNHIPSGVRHFIARQLAIHDITVLAEYGQRENTRREHAALIRQHYDYREFAWPWTFRLTRLLYTRSWISNERPGLLFDLATGWLMQHRIILPGATTLTRLISEVREKATLRLWNRLAMIPSAMQRSQLETLLGPADSGRLSLLESLKKGPVTISGPAFNEAIDRWKMLSDFGLHNESLNAIPTVRLKNLARYAGMTSVFNIARMAPQKRMAVLVAFVLAWETLALDDALDVLDAMLTVIIRDARKIGQKKRLRSLKDLDKSALALASACSYLLKEETPDESIRAEVFSHIPRQKLADIIALVREIARPSDDNFHDEMVEQYGRVRRFLPRLLNTVKFSAAPAGRTTLNACDYLSREFSSRRQYFDDAPTEIISRPWKRLVINKEKHITRRGYTLCFLSKLQDSLRRRDVYVTGSNRWGDPREKLLQGADWQANRIKVYRSLGHPTNPQDAIKSLGLQLDARYRQVAARLGENEAVQLDISGPKPRLTITPLASLDEPDSLKRLSKMVSDLLPAVDLTELLLEINAHTGFADEFFHASEASARVDDLPVSISAVLMAEACNIGLEPLIRSNVPALTRHRLNWTKANYLRAETITSANARLVDFQATLPLAQVWGGGEVASADGMRFVTPVRTINAGPNRKYFGYNRGITWYNFISDQYSGFHGIVIPGTLRDSIFVLEGLLEQETGLNPTEIMTDTAGASDLVFGLFWLLGYQFSPRLADAGSSVFWRMDNDADYGVLNDIARGQSDPRKITLQWDEMIRAAGSLKLGKVQASVLVRSLLKSERPSGLTQAIIEVGRINKTLYLLNYIDDEDYRRRILTQLNRGESRHAVARAICHGQKGEIRKRYTDGQEDQLGALGLVTNAVVLWNTIYMQAALDHLRAQGETLNDEDIARLSPLCHGHINMLGHYSFTLTELVTKGHLRPLKEASEEENIA
SIO_010081: LU633_RS25565
subclass of: SO_0000673
so part of: LU633_RS25565
location: 15389..18394
location: region:15389-18394:1
so has part: feature:15389-18394:1:exon

WP_016193186.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15389-18394:1:exon

LU633_RS25570
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25570
old locus tag: LU633_25570
so part of: sequence
location: complement(18456..19103)
location: region:18456-19103:-1
so has part: feature:18456-19103:-1:exon
subclass of: SO_0000010

position:18456:-1
position: 18456
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19103:-1
position: 19103
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18456-19103:-1:exon

LU633_RS25570
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25570
old locus tag: LU633_25570
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001549893.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MTTQTVPNSFVRAYLRASTSEQDATRALETINAFASERGLSICNYYIENESGSRLDRPELFRLLKDCQQNDILLIEDVDRLSRLAGEDWNSLKKMIRQKDIRVVAVNVPTTWIASGIHDFDSRMFAAINDMLLDMLAAVARRDYEQRRERQKQGIARARKEGKYRGRQPDQSRYDAINKLLTSGSSWSQVQRVLGCSRGTISCAVKQRNKAESDL
SIO_010081: LU633_RS25570
subclass of: SO_0000673
so part of: LU633_RS25570
location: complement(18456..19103)
location: region:18456-19103:-1
so has part: feature:18456-19103:-1:exon

WP_015256836.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18456-19103:-1:exon

LU633_RS25575
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25575
old locus tag: LU633_25575
so part of: sequence
location: 19337..19672
location: region:19337-19672:1
so has part: feature:19337-19672:1:exon
subclass of: SO_0000010

position:19337:1
position: 19337
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19672:1
position: 19672
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19337-19672:1:exon

LU633_RS25575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25575
old locus tag: LU633_25575
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004026069.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type II toxin-antitoxin system RelE/ParE family toxin
translation: MPYTAKRYQTENGEVPYTDWMKKLRRKDQTAALKVDSRIARAMGGNFGDHKFERDGVWELRVDYGPGYRVYYSIEDGEIILLLIGGNKKTQTADLDKAVGYLQDFKKRSKK
SIO_010081: LU633_RS25575
subclass of: SO_0000673
so part of: LU633_RS25575
location: 19337..19672
location: region:19337-19672:1
so has part: feature:19337-19672:1:exon

WP_046372428.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19337-19672:1:exon

LU633_RS25580
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25580
old locus tag: LU633_25580
so part of: sequence
location: 19669..20025
location: region:19669-20025:1
so has part: feature:19669-20025:1:exon
subclass of: SO_0000010

position:19669:1
position: 19669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:20025:1
position: 20025
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19669-20025:1:exon

LU633_RS25580
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25580
old locus tag: LU633_25580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000127484.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTATKNVKSLISKNDYPAAVDHNAAMIEELRADPDYANAYLANALEEINESGGLGGFLVALRQVIEARGGISEAAKKSGLARQSIYRALSPNGNPTITTLAQLAAVAGLQFTLSKSSH
SIO_010081: LU633_RS25580
subclass of: SO_0000673
so part of: LU633_RS25580
location: 19669..20025
location: region:19669-20025:1
so has part: feature:19669-20025:1:exon

WP_006122339.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19669-20025:1:exon

LU633_RS25585
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25585
old locus tag: LU633_25585
so part of: sequence
location: 20808..21146
location: region:20808-21146:1
so has part: feature:20808-21146:1:exon
subclass of: SO_0000010

position:20808:1
position: 20808
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21146:1
position: 21146
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20808-21146:1:exon

LU633_RS25585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25585
old locus tag: LU633_25585
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNVSGNSSISVNNAYRTESANTNSLKSESAALTNIKNVKNEPVLFRKSIISAETFDRIQQKATDAKNARKQAIPVSDKSINALKNMRKVPINADLFDRIQQKAIDAKNARKS
SIO_010081: LU633_RS25585
subclass of: SO_0000673
so part of: LU633_RS25585
location: 20808..21146
location: region:20808-21146:1
so has part: feature:20808-21146:1:exon

WP_016193175.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20808-21146:1:exon

LU633_RS25590
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25590
old locus tag: LU633_25590
so part of: sequence
location: 21387..21947
location: region:21387-21947:1
so has part: feature:21387-21947:1:exon
subclass of: SO_0000010

position:21387:1
position: 21387
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21947:1
position: 21947
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21387-21947:1:exon

LU633_RS25590
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25590
old locus tag: LU633_25590
inference: COORDINATES: similar to AA sequence:RefSeq:NP_490535.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: recombinase family protein
translation: MALYGYARVSTSEQDLTLQTQTLRAAGCEIIRAEKASGSSRTGRSELQLLLEFLRPGDTLMVTRVDRLARSIKDLQDIVYALTLQGVTLRATEQPVDTRSAAGKAFLDMLGVFAEFETNLRRERQMEGIAAAKARGVYRGRKPSIDPAEVWRLYTTEKMGATAIARQLGIGRASVYRALENYEQPA
SIO_010081: LU633_RS25590
subclass of: SO_0000673
so part of: LU633_RS25590
location: 21387..21947
location: region:21387-21947:1
so has part: feature:21387-21947:1:exon

WP_016193176.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21387-21947:1:exon

LU633_RS25595
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25595
old locus tag: LU633_25595
so part of: sequence
location: 21931..23595
location: region:21931-23595:1
so has part: feature:21931-23595:1:exon
subclass of: SO_0000010

position:21931:1
position: 21931
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:23595:1
position: 23595
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21931-23595:1:exon

LU633_RS25595
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25595
old locus tag: LU633_25595
inference: COORDINATES: similar to AA sequence:RefSeq:NP_490534.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS481 family transposase
translation: MSSRRSAIPADSLLQLRQRLDRLPPKSPERASQIAAAAQLYGISATTVYRALRLVLRPRTAHRRDHGQPRILPPSELEHYCELIAALKLRTTNKSGRHLSTGRAIQLLEEHGVETAQGVIKSPKGLLSKQTVNRWLSRWCLDQPRLLREPPAVRFQAENSNDCWQFDMSPSDLKHIERPDWIDPTRGDPTLMLFSVVDDRSGVTYQEYRCVYGEDAESALRFLFNAMAPKARSDFPFQGRPKLLYLDNGPVAKSHVFQNVMQSLKVDWLTHTPAGKDGTRTSARSKGKVERPFRTVKEAHETLYHFHKPETELQANEWLWNYLSRYNAQRHRSEKHSRLEDWLANISQEGVRDMCSWEQYCRFAREPESRKVGVDARVTIDGSAWEVEPDMAGETVILLWGLFDEEMYVEFTGETWGPYYPVSGPVPLHRYRTFRRGKAAERADRIHALARQLNIPISALSGSDLRVVSDDTQQRIDELPHQPFDARKFEYHFPGVIAAKLAIADDLAIPLARMSDEDRAFIDSILTETLNRSEVLARIRDYFRNRQSGEDHAG
SIO_010081: LU633_RS25595
subclass of: SO_0000673
so part of: LU633_RS25595
location: 21931..23595
location: region:21931-23595:1
so has part: feature:21931-23595:1:exon

WP_016193177.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21931-23595:1:exon

LU633_RS25600
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25600
old locus tag: LU633_25600
so part of: sequence
location: 23528..24553
location: region:23528-24553:1
so has part: feature:23528-24553:1:exon
subclass of: SO_0000010

position:23528:1
position: 23528
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24553:1
position: 24553
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:23528-24553:1:exon

LU633_RS25600
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25600
old locus tag: LU633_25600
inference: COORDINATES: similar to AA sequence:RefSeq:NP_490533.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ExeA family protein
translation: MKYSPASETIFVTDNQEKIMRVEVMEHYGLTQSVEQAGYYETAHHKQLMKDIKGAIREGRLIAVCGVVGSGKTVTLRRLQQQLMDENKIIVARSLSVDKQSVRLATLINALFYDLAQDKQVQIPKQGERRERELQELVKKGKRPVALFVDEAHDLNGNTLTGLKRLMEVVEDGGGRLSVVLAGHPKLRNDLRRPTMEEIGYRTDIFTLDGITGSQREYIRWLLKTSTGKGNPEDILTTEAVDLLAMKLRTPLQVQLHLTLAMEAGYQIGEKPITATLVESVLSRQLDDLEPTLTRHGYRLKDMVEQFDAKPAEIRALFNNQLDPARTAELRDRMLAVGLPI
SIO_010081: LU633_RS25600
subclass of: SO_0000673
so part of: LU633_RS25600
location: 23528..24553
location: region:23528-24553:1
so has part: feature:23528-24553:1:exon

WP_087949743.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:23528-24553:1:exon

LU633_RS25605
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25605
old locus tag: LU633_25605
so part of: sequence
location: 24691..24993
location: region:24691-24993:1
so has part: feature:24691-24993:1:exon
subclass of: SO_0000010

position:24691:1
position: 24691
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24993:1
position: 24993
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:24691-24993:1:exon

LU633_RS25605
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25605
old locus tag: LU633_25605
inference: COORDINATES: similar to AA sequence:RefSeq:WP_020322723.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MRVGGISIASRYSYEQTNVTFYQVLSVHGKKTVTVREIRANSEYTDSMVGFKTPVLNDFTGEYFKRQIKDCGDELAIKIEDFETAYKTAPGKKHRFTSYY
SIO_010081: LU633_RS25605
subclass of: SO_0000673
so part of: LU633_RS25605
location: 24691..24993
location: region:24691-24993:1
so has part: feature:24691-24993:1:exon

WP_016193179.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:24691-24993:1:exon

LU633_RS25610
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25610
old locus tag: LU633_25610
so part of: sequence
location: 25045..25239
location: region:25045-25239:1
so has part: feature:25045-25239:1:exon
subclass of: SO_0000010

position:25045:1
position: 25045
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25239:1
position: 25239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25045-25239:1:exon

LU633_RS25610
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25610
old locus tag: LU633_25610
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006122357.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MEREFSAVASLKRNVKFWFECCGCNNEQVISNVKNWFDFAYCPAEQEKAKNEIISALTGEEKKI
SIO_010081: LU633_RS25610
subclass of: SO_0000673
so part of: LU633_RS25610
location: 25045..25239
location: region:25045-25239:1
so has part: feature:25045-25239:1:exon

WP_016193180.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25045-25239:1:exon

LU633_RS25615
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25615
old locus tag: LU633_25615
so part of: sequence
location: 25236..25442
location: region:25236-25442:1
so has part: feature:25236-25442:1:exon
subclass of: SO_0000010

position:25236:1
position: 25236
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:25442:1
position: 25442
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25236-25442:1:exon

LU633_RS25615
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25615
old locus tag: LU633_25615
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MIVEVSGCWNSLIPMTYKHIEGVQMSMQKIIAIADSLVKGWEVKIPALKATEWDELRWWLDYLKGYDI
SIO_010081: LU633_RS25615
subclass of: SO_0000673
so part of: LU633_RS25615
location: 25236..25442
location: region:25236-25442:1
so has part: feature:25236-25442:1:exon

WP_016193181.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25236-25442:1:exon

LU633_RS25620
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25620
old locus tag: LU633_25620
so part of: sequence
location: 25945..26352
location: region:25945-26352:1
so has part: feature:25945-26352:1:exon
subclass of: SO_0000010

position:25945:1
position: 25945
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:26352:1
position: 26352
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:25945-26352:1:exon

LU633_RS25620
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25620
old locus tag: LU633_25620
inference: COORDINATES: protein motif:HMM:NF017105.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: relaxosome protein TraM
translation: MPRAQVYITQNNYKRIQSIVDAKKEDGADRTEANVSSVAAMLLDIGLRVYEFQQKKEQEGEIDSIQENNDLPDPLMFNKVLLENILKASYASTTLLQMIGNLDEVKNIDSFNYENVKVQIRDKIDSQLTKIFSDD
SIO_010081: LU633_RS25620
subclass of: SO_0000673
so part of: LU633_RS25620
location: 25945..26352
location: region:25945-26352:1
so has part: feature:25945-26352:1:exon

WP_016193182.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:25945-26352:1:exon

LU633_RS25625
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25625
old locus tag: LU633_25625
so part of: sequence
location: complement(26503..27711)
location: region:26503-27711:-1
so has part: feature:26503-27711:-1:exon
subclass of: SO_0000010

position:26503:-1
position: 26503
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:27711:-1
position: 27711
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:26503-27711:-1:exon

LU633_RS25625
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25625
old locus tag: LU633_25625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_000343613.1
GO function: GO:0004803 - transposase activity [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: IS256 family transposase
translation: MDEKRLKALAAELAKGLKTEADLNQFSRMLTKLTVETALNAELTDHIGHEKNAPKTGSNTRNGYSSKTLLCDDGEIEISTPRDRESTFEPQLIKKNQTRITQMDSQILSLYAKGMTTREIVATFKEMYDADVSPTLISKVTDAVKEQVSEWQNRPLDALYPIVYLDCIVVKVRHSGTVINKAVFLALGINTEGQKELLGMWLAENEGAKFWLSVLTELKNRGLQDILIACVDGLKGFPDAINSVYPQTHIQLCIIHMVRNSLKYVSWKDYKAVTGGLKAVYQAPTEAAALMALDKFADVWDDKYPQISKSWRAHWENLNTFFGYPPDIRKAIYTTNAIESLNSVIRAAIKKRKVFPTDDSVRKVIYLAIQSASKKWSMPIQNWRLAMSRFIIEFGDRLSDHL
SIO_010081: LU633_RS25625
subclass of: SO_0000673
so part of: LU633_RS25625
location: complement(26503..27711)
location: region:26503-27711:-1
so has part: feature:26503-27711:-1:exon

WP_046371917.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:26503-27711:-1:exon

LU633_RS25630
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25630
old locus tag: LU633_25630
so part of: sequence
location: 27904..28371
location: region:27904-28371:1
so has part: feature:27904-28371:1:exon
subclass of: SO_0000010

position:27904:1
position: 27904
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28371:1
position: 28371
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:27904-28371:1:exon

LU633_RS25630
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25630
old locus tag: LU633_25630
inference: COORDINATES: similar to AA sequence:RefSeq:WP_004131847.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: lytic transglycosylase domain-containing protein
translation: MRLIKSLILVAVCLCSMNASAFCFVQAGERYHLDPMLLEAIAMQESSLNPRITNDNGPRLGKDYGLMQINSRHIPELVRMGVIRSPQDLLNDPCLNVQIGAWILARHLRTCGVNWHCLGSYNAGFSDKNAGKREHYANLIYNLYVRVNRSQKITG
SIO_010081: LU633_RS25630
subclass of: SO_0000673
so part of: LU633_RS25630
location: 27904..28371
location: region:27904-28371:1
so has part: feature:27904-28371:1:exon

WP_016193183.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:27904-28371:1:exon

LU633_RS25635
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
gene: traD
locus tag: LU633_RS25635
old locus tag: LU633_25635
so part of: sequence
location: 28393..30540
location: region:28393-30540:1
so has part: feature:28393-30540:1:exon
subclass of: SO_0000010

position:28393:1
position: 28393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:30540:1
position: 30540
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:28393-30540:1:exon

LU633_RS25635
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
gene: traD
locus tag: LU633_RS25635
old locus tag: LU633_25635
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001568075.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: type IV conjugative transfer system coupling protein TraD
translation: MSFKGRDITQGGQVTFMRFRMFLQVNNVLFYYVFIGWLALLGFILYLRLNTQTFLNGLVYWWSHTLIPFGSIIRKPPVYPVRYYGNILYYTYDKILTDKYTVWCGITLRNEIILSGLFASIITFTVVMGVFWYIGRVGKKASEDEVTGGRILEDNPKVVASLMRRRGTASHIVIDGLPIVKNSEIQNFAMHGTVGTGKSTLMRKKLLRLREAGVPVIIYDKGNTFVEEFFDESIDIILNPMDRRCANWDMWAECQTLPDLEAVTETLIPMGNSGDPFWQASARTIFAEGAEQMRGDKKRTYNSFLRTLLAIKLDKLRDFLAGTPASMLVDGSIEKTAISIRSVLTNYVKSLRYLQGIDREGKKPFTIREWMQGNSDKKRSGWLFITSNQRHHESLKPLISMWLGIASGNLLSLHENRYRRVWFFYDELTSLHKLPNLPYIIAEARKYGGCFVLGFQSYAQLEETYGPKFAAAIYDLLNTKYFFRSPSAAIAKFVEEDIGQTVRKRFSEQTSFGTDEVRDGISYGKDEERVSIVSYSDVQGLEDLQCFVTLPGKYPVVRLTLKYQPLPKVAEGLLERDVKTSLDPEIEKEISQQESSERLAARKLFIPSDTQVKTDPAPAGNSAGVSSVPTETEGSGPDSSSTGPSGDKPAATDKPARGGGRENEIPHGVSTDGEVVDMEAYEAWQQEMQHGTRDEVRREEVNINHHPSHEIDMEL
SIO_010081: LU633_RS25635
subclass of: SO_0000673
so part of: LU633_RS25635
location: 28393..30540
location: region:28393-30540:1
so has part: feature:28393-30540:1:exon

WP_016193184.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:28393-30540:1:exon

LU633_RS25640
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25640
old locus tag: LU633_25640
pseudo: true
so part of: sequence
location: 30540..>33935
location: region:30540-33935:1
so has part: feature:30540-33935:1:exon
subclass of: SO_0000010

position:33935:1
position: 33935
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:30540-33935:1:exon

LU633_RS25640
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25640
old locus tag: LU633_25640
inference: COORDINATES: protein motif:HMM:NF024991.2
GO function: GO:0004386 - helicase activity [Evidence IEA]
GO process: GO:0006259 - DNA metabolic process [Evidence IEA]
note: internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: conjugative relaxase
SIO_010081: LU633_RS25640
subclass of: SO_0000673
so part of: LU633_RS25640
location: 30540..>33935
location: region:30540-33935:1
so has part: feature:30540-33935:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:30540-33935:1:exon

LU633_RS25645
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25645
old locus tag: LU633_25645
so part of: sequence
location: 34776..35765
location: region:34776-35765:1
so has part: feature:34776-35765:1:exon
subclass of: SO_0000010

position:34776:1
position: 34776
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:35765:1
position: 35765
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:34776-35765:1:exon

LU633_RS25645
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25645
old locus tag: LU633_25645
inference: COORDINATES: protein motif:HMM:NF018726.2
GO function: GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: conjugative transfer relaxase/helicase TraI
translation: MATKESGYVTLSRTKEHVQVYTDDRAGWLAELSKNKGDRTAHDYLMAGEDRAGKTAEGILSWASPLADVAAGRALLKNYGLADGDSQGLFVPGVRRHPEPGLAFALWDSSGNRSGVVILTIKADERNGVSLRGDFRVIGSSDARFAGIQQSRNGENRIAESLPEGLQLAQQHPDSGVIVRMEGDGLPLNISRITGADQVIDDNLTAQLARNVAEKTEDPLPFIPEPKENAEQEAERLAREALEKQGKGEKDIRVEDVLAAISEPEDDIHTGLLAGKLKEEKYQLSGRDIAAALSDKSPGKEPEAESQPDQSLHLKQIERDIVKEKSFED
SIO_010081: LU633_RS25645
subclass of: SO_0000673
so part of: LU633_RS25645
location: 34776..35765
location: region:34776-35765:1
so has part: feature:34776-35765:1:exon

WP_232426940.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:34776-35765:1:exon

LU633_RS25650
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25650
old locus tag: LU633_25650
so part of: sequence
location: complement(35775..36380)
location: region:35775-36380:-1
so has part: feature:35775-36380:-1:exon
subclass of: SO_0000010

position:35775:-1
position: 35775
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36380:-1
position: 36380
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:35775-36380:-1:exon

LU633_RS25650
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25650
old locus tag: LU633_25650
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016193191.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF2913 family protein
translation: MTVFYQKRTTEELAHLAWCLLVAVKLSQKQGKIRTDLQIHMFIMQWLTTAQKRKLFPRLVAQDILWLINEGKRYGFSAKLHRKLEYIWRASSGELLKQSVLFRFTFFIETLKTMGWRDFLLSPQEWHSYHRESVTANAVYTPKAKLHPAFSDGGELIKPLEIRFTGDISGVFPLLEQCHLRAEQRPDEEGFSVIMLLPEKA
SIO_010081: LU633_RS25650
subclass of: SO_0000673
so part of: LU633_RS25650
location: complement(35775..36380)
location: region:35775-36380:-1
so has part: feature:35775-36380:-1:exon

WP_016193191.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:35775-36380:-1:exon

LU633_RS25655
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
locus tag: LU633_RS25655
old locus tag: LU633_25655
so part of: sequence
location: 36547..37110
location: region:36547-37110:1
so has part: feature:36547-37110:1:exon
subclass of: SO_0000010

position:36547:1
position: 36547
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37110:1
position: 37110
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36547-37110:1:exon

LU633_RS25655
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
locus tag: LU633_RS25655
old locus tag: LU633_25655
inference: COORDINATES: similar to AA sequence:RefSeq:WP_008324931.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: phospholipase D family protein
translation: MMLFSYGKLVRASFLCLPLLSSLPFPAVAGISTAPDIQVGFSPEGTGRLLVLNTIGSAQQSIRMMAYSFTDPDVMKALIAAHQRGVDIKIVIDEKGNRNRASMAAMNLIVNAGIPLRTNDRFPIQHDKILIVDNHTVESGSYNFSRAGASKNSENVVVMRFMPAIASQYLSHWQSRWEMGTDWQSTY
SIO_010081: LU633_RS25655
subclass of: SO_0000673
so part of: LU633_RS25655
location: 36547..37110
location: region:36547-37110:1
so has part: feature:36547-37110:1:exon

WP_040465936.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:36547-37110:1:exon

LU633_RS25660
type: Gene
subclass of: SO_0000704
RO_0002162: 65700
gene: repA
locus tag: LU633_RS25660
old locus tag: LU633_25660
so part of: sequence
location: 37257..37502
location: region:37257-37502:1
so has part: feature:37257-37502:1:exon
subclass of: SO_0000010

position:37257:1
position: 37257
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:37502:1
position: 37502
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:37257-37502:1:exon

LU633_RS25660
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65700
gene: repA
locus tag: LU633_RS25660
old locus tag: LU633_25660
inference: COORDINATES: similar to AA sequence:RefSeq:WP_001485405.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: replication regulatory protein RepA
translation: MSQAVNAATSSSKRAYRKGNPLSVSERQQALMERRKETHKEIKVYVPTVLKERLQNLCEAEGVSQAEMISRLIADAGIPQK
SIO_010081: LU633_RS25660
subclass of: SO_0000673
so part of: LU633_RS25660
location: 37257..37502
location: region:37257-37502:1
so has part: feature:37257-37502:1:exon

WP_016193193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:37257-37502:1:exon