Arthrobacter alpinus strain A3 plasmid unnamed, complete sequence.
Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Micrococcaceae; Arthrobacter.
Submitted (18-DEC-2015) Key Laboratory of Desert & Desertification, Cold & Arid Regions Environmental & Engineering Research Institute, Chinese Academy of Sciences, Donggang West Rd. 320, Lanzhou 730000, China
Submitted (28-AUG-2014) Cold and Arid Regions Environmental and Engineering Research Institute, Chinese Academy of Sciences, 320 W. Donggang Road, Lanzhou, Gansu 730000, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP013746.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT Analysis v. 2.2, SOAPsnp and\n SOAPIndel\nGenome Coverage :: Ilumina 110X; PacBio 320X\nSequencing Technology :: Illumina Hiseq4000 and Pacbio RSII\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/12/2023 01:32:47\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,047\nCDSs (total) :: 3,973\nGenes (coding) :: 3,934\nCDSs (with protein) :: 3,934\nGenes (RNA) :: 74\nrRNAs :: 6, 7, 6 (5S, 16S, 23S)\ncomplete rRNAs :: 6, 7, 6 (5S, 16S, 23S)\ntRNAs :: 52\nncRNAs :: 3\nPseudo Genes (total) :: 39\nCDSs (without protein) :: 39\nPseudo Genes (ambiguous residues) :: 0 of 39\nPseudo Genes (frameshifted) :: 14 of 39\nPseudo Genes (incomplete) :: 27 of 39\nPseudo Genes (internal stop) :: 12 of 39\nPseudo Genes (multiple problems) :: 13 of 39\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_009359320.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF036700.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF017469.2
COORDINATES: similar to AA sequence:RefSeq:WP_017200683.1
COORDINATES: protein motif:HMM:NF012759.2
COORDINATES: similar to AA sequence:RefSeq:WP_018851249.1
COORDINATES: protein motif:HMM:NF013166.2
COORDINATES: similar to AA sequence:RefSeq:WP_017200679.1
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024122.2
COORDINATES: similar to AA sequence:RefSeq:WP_011776084.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200676.1
COORDINATES: protein motif:HMM:NF037627.2
COORDINATES: similar to AA sequence:RefSeq:WP_018638728.1
COORDINATES: similar to AA sequence:RefSeq:WP_007271063.1
PDDEXK nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF014814.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0000150 - DNA strand exchange activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01653.1
COORDINATES: similar to AA sequence:RefSeq:WP_015099662.1
ATP-binding cassette domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005268114.1
COORDINATES: similar to AA sequence:RefSeq:WP_020488929.1
COORDINATES: similar to AA sequence:RefSeq:WP_018769835.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689836.1
COORDINATES: similar to AA sequence:RefSeq:WP_012243587.1
COORDINATES: protein motif:HMM:NF036995.2
DUF1016 N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007269339.1
COORDINATES: similar to AA sequence:RefSeq:WP_013349579.1
GO:0004803 - transposase activity [Evidence IEA]
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_001297906.1
COORDINATES: protein motif:HMM:NF014626.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012742.2
substrate-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_007454726.1
COORDINATES: similar to AA sequence:RefSeq:WP_011775704.1
COORDINATES: similar to AA sequence:RefSeq:WP_007449225.1
COORDINATES: similar to AA sequence:RefSeq:WP_010069822.1
COORDINATES: similar to AA sequence:RefSeq:WP_015884536.1
COORDINATES: protein motif:HMM:NF013697.2
COORDINATES: similar to AA sequence:RefSeq:WP_012630816.1
COORDINATES: similar to AA sequence:RefSeq:WP_017200449.1
COORDINATES: similar to AA sequence:RefSeq:WP_017829386.1
SpaH/EbpB family LPXTG-anchored major pilin
COORDINATES: protein motif:HMM:NF013508.2
SpaA isopeptide-forming pilin-related protein
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: protein motif:HMM:NF018822.2
COORDINATES: similar to AA sequence:RefSeq:WP_000830285.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013347661.1
COORDINATES: protein motif:HMM:NF033902.0
COORDINATES: protein motif:HMM:NF039924.1
COORDINATES: similar to AA sequence:RefSeq:WP_011689802.1
COORDINATES: protein motif:HMM:NF015422.2
helicase associated domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013603139.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_014920324.1
COORDINATES: similar to AA sequence:RefSeq:WP_014920323.1
COORDINATES: similar to AA sequence:RefSeq:WP_018762617.1
COORDINATES: similar to AA sequence:RefSeq:WP_011776896.1
COORDINATES: similar to AA sequence:RefSeq:WP_005266402.1
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF022388.2
COORDINATES: protein motif:HMM:NF016430.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017102.2
COORDINATES: protein motif:HMM:NF022650.2
COORDINATES: protein motif:HMM:NF024254.2
COORDINATES: protein motif:HMM:NF014581.2
TraM recognition domain-containing protein
COORDINATES: protein motif:HMM:NF012651.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015100403.1
COORDINATES: similar to AA sequence:RefSeq:WP_011931506.1
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: similar to AA sequence:RefSeq:WP_009376393.1
COORDINATES: protein motif:HMM:NF024248.2
lipopolysaccharide assembly protein LapA domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015938223.1
COORDINATES: similar to AA sequence:RefSeq:WP_009358519.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF014665.2
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024107.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024212.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:TIGR03083.1
GO:0046872 - metal ion binding [Evidence IEA]
maleylpyruvate isomerase family mycothiol-dependent enzyme
COORDINATES: similar to AA sequence:RefSeq:WP_007272273.1
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019435619.1
COORDINATES: similar to AA sequence:RefSeq:WP_017829837.1
COORDINATES: similar to AA sequence:RefSeq:WP_017832712.1
COORDINATES: protein motif:HMM:NF033563.0
COORDINATES: similar to AA sequence:RefSeq:WP_017197314.1
COORDINATES: similar to AA sequence:RefSeq:WP_010146710.1
COORDINATES: similar to AA sequence:RefSeq:WP_007589492.1
COORDINATES: protein motif:HMM:NF037009.2
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_013415090.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017884649.1
COORDINATES: similar to AA sequence:RefSeq:WP_015770623.1
COORDINATES: similar to AA sequence:RefSeq:WP_013862327.1
COORDINATES: similar to AA sequence:RefSeq:WP_006590976.1
COORDINATES: similar to AA sequence:RefSeq:WP_003155746.1
COORDINATES: similar to AA sequence:RefSeq:WP_019693648.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: similar to AA sequence:RefSeq:WP_018779898.1
COORDINATES: similar to AA sequence:RefSeq:WP_014920417.1
COORDINATES: similar to AA sequence:RefSeq:WP_010543081.1
COORDINATES: similar to AA sequence:RefSeq:WP_018771431.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_018771432.1
COORDINATES: protein motif:HMM:NF013677.2
COORDINATES: protein motif:HMM:NF033516.0
COORDINATES: protein motif:HMM:NF025063.2
COORDINATES: similar to AA sequence:RefSeq:WP_003426383.1
COORDINATES: similar to AA sequence:RefSeq:WP_011031893.1
COORDINATES: protein motif:HMM:NF024854.2
COORDINATES: similar to AA sequence:RefSeq:WP_017202892.1
COORDINATES: similar to AA sequence:RefSeq:WP_020139693.1
COORDINATES: protein motif:HMM:NF041492.1
GO:0009986 - cell surface [Evidence IEA]
LPXTG cell wall anchor domain-containing protein
COORDINATES: protein motif:HMM:TIGR01451.2
COORDINATES: protein motif:HMM:NF016119.2
COORDINATES: protein motif:HMM:NF024863.2
GDSL-type esterase/lipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_018134250.1
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein