Aeromonas allosaccharophila strain FDAARGOS_933 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.
FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
Submitted (02-DEC-2020) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP065746.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3.0, HGAP v. 3, SPAdes v. 3.11.1\nGenome Coverage :: 571x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 02:41:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,257\nCDSs (total) :: 4,097\nGenes (coding) :: 4,055\nCDSs (with protein) :: 4,055\nGenes (RNA) :: 160\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 124\nncRNAs :: 5\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 18 of 42\nPseudo Genes (incomplete) :: 28 of 42\nPseudo Genes (internal stop) :: 11 of 42\nPseudo Genes (multiple problems) :: 13 of 42\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005322034.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005322038.1
plasmid mobilization relaxosome protein MobC
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015397.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
relaxase/mobilization nuclease domain-containing protein
COORDINATES: protein motif:HMM:NF016710.2
COORDINATES: protein motif:HMM:NF016769.2
MbeD family mobilization/exclusion protein
COORDINATES: similar to AA sequence:RefSeq:WP_016518892.1
COORDINATES: similar to AA sequence:RefSeq:WP_012763663.1
PmeII family type II restriction endonuclease