Aeromonas allosaccharophila strain FDAARGOS_933 plasmid unnamed, complete sequence.
type: Entry
definition: Aeromonas allosaccharophila strain FDAARGOS_933 plasmid unnamed, complete sequence.
sequence version: NZ_CP065746.1
sequence date: 2022-12-28
sequence: sequence
division: CON
label: NZ_CP065746.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN13450463
keyword: RefSeq
source: Aeromonas allosaccharophila
organism: Aeromonas allosaccharophila
taxonomy: Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP065746.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: SMRT v. 2.3.0, HGAP v. 3, SPAdes v. 3.11.1\nGenome Coverage :: 571x\nSequencing Technology :: Pacbio; Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 02:41:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,257\nCDSs (total) :: 4,097\nGenes (coding) :: 4,055\nCDSs (with protein) :: 4,055\nGenes (RNA) :: 160\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 124\nncRNAs :: 5\nPseudo Genes (total) :: 42\nCDSs (without protein) :: 42\nPseudo Genes (ambiguous residues) :: 0 of 42\nPseudo Genes (frameshifted) :: 18 of 42\nPseudo Genes (incomplete) :: 28 of 42\nPseudo Genes (internal stop) :: 11 of 42\nPseudo Genes (multiple problems) :: 13 of 42\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.

sequence
subclass of: SO_0000155
sequence length: 5636
topology: circular
so has quality: SO_0000988
location: 1..5636
location: region:1-5636:1
RO_0002162: 656

NZ_CP065746
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN13450463
type: BioSample
SIO_000068: biosample

1
title: FDA dAtabase for Regulatory Grade micrObial Sequences (FDA-ARGOS): Supporting development and validation of Infectious Disease Dx tests
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
author: Sichtig, H.
journal: Unpublished

2
title: Direct Submission
author: Sproer, C.
author: Gronow, S.
author: Severitt, S.
author: Schroder, I.
author: Tallon, L.
author: Sadzewicz, L.
author: Zhao, X.
author: Boylan, J.
author: Ott, S.
author: Bowen, H.
author: Vavikolanu, K.
author: Mehta, A.
author: Aluvathingal, J.
author: Nadendla, S.
author: Lowell, S.
author: Myers, T.
author: Yan, Y.
author: Sichtig, H.
journal: Submitted (02-DEC-2020) Center for Devices and Radiological Health, US Food and Drug Administration, 10903 New Hampshire Avenue, Silver Spring, MD 20993-0002, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5636:1
position: 5636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-5636:1:source
so part of: sequence
organism: Aeromonas allosaccharophila
mol type: genomic DNA
strain: FDAARGOS_933
culture collection: DSM:24388
plasmid: unnamed
collected by: DSMZ

656
type: Taxonomy
SIO_000068: taxonomy

I6G90_RS21220
type: Gene
subclass of: SO_0000704
RO_0002162: 656
locus tag: I6G90_RS21220
old locus tag: I6G90_21215
so part of: sequence
location: join(5573..5636,1..242)
location: region:1-5636:1
so has part: feature:5573-5636:1:exon
so has part: feature:1-242:1:exon
subclass of: SO_0000010

60788184
type: Gene
SIO_000068: ncbigene

urn:…
SIO_000300: 1
SIO_000628: feature:5573-5636:1:exon

position:5573:1
position: 5573
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-242:1:exon

position:242:1
position: 242
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

I6G90_RS21220
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
locus tag: I6G90_RS21220
old locus tag: I6G90_21215
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005322034.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKDERDDQTLDLLPSGKRRGRPPTGKALSPAAKQAAYRARQREKTVTVTLNRPDCGELEIFLRNLRDGRTSTLAPEVVARLHEAVQSAWRGQLHSGNGDQK
SIO_010081: I6G90_RS21220
subclass of: SO_0000673
so part of: I6G90_RS21220
location: join(5573..5636,1..242)
location: region:1-5636:1
so has part: feature:5573-5636:1:exon
so has part: feature:1-242:1:exon

WP_017411281.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5573-5636:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-242:1:exon

I6G90_RS21225
type: Gene
subclass of: SO_0000704
RO_0002162: 656
gene: mobC
locus tag: I6G90_RS21225
old locus tag: I6G90_21220
so part of: sequence
location: 239..580
location: region:239-580:1
so has part: feature:239-580:1:exon
subclass of: SO_0000010

60788185
type: Gene
SIO_000068: ncbigene

position:239:1
position: 239
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:580:1
position: 580
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:239-580:1:exon

I6G90_RS21225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
gene: mobC
locus tag: I6G90_RS21225
old locus tag: I6G90_21220
inference: COORDINATES: similar to AA sequence:RefSeq:WP_005322038.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: plasmid mobilization relaxosome protein MobC
translation: MTTAKRERVIKIRVTDEEFARLKGLSGDERLAEWMRSQCLGHDKAAGRRRTPVPKADPALLRQLAGIGNNLNQVARRVNSGEWGAVERVQVIAVLMAMERALQALSVPSTEVT
SIO_010081: I6G90_RS21225
subclass of: SO_0000673
so part of: I6G90_RS21225
location: 239..580
location: region:239-580:1
so has part: feature:239-580:1:exon

WP_182951819.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:239-580:1:exon

I6G90_RS21230
type: Gene
subclass of: SO_0000704
RO_0002162: 656
locus tag: I6G90_RS21230
old locus tag: I6G90_21225
so part of: sequence
location: 577..750
location: region:577-750:1
so has part: feature:577-750:1:exon
subclass of: SO_0000010

60788186
type: Gene
SIO_000068: ncbigene

position:577:1
position: 577
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:750:1
position: 750
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:577-750:1:exon

I6G90_RS21230
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
locus tag: I6G90_RS21230
old locus tag: I6G90_21225
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MMNECGVAEYDYTLIRLPGEQGWSLRLLKDGQEISGEVYQEHDEALSVATVWLCSES
SIO_010081: I6G90_RS21230
subclass of: SO_0000673
so part of: I6G90_RS21230
location: 577..750
location: region:577-750:1
so has part: feature:577-750:1:exon

WP_163157864.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:577-750:1:exon

I6G90_RS21360
type: Gene
subclass of: SO_0000704
RO_0002162: 656
locus tag: I6G90_RS21360
pseudo: true
so part of: sequence
location: 966..>1397
location: region:966-1397:1
so has part: feature:966-1397:1:exon
subclass of: SO_0000010

69065140
type: Gene
SIO_000068: ncbigene

position:966:1
position: 966
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1397:1
position: 1397
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:966-1397:1:exon

I6G90_RS21360
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
locus tag: I6G90_RS21360
inference: COORDINATES: protein motif:HMM:NF015397.2
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: relaxase/mobilization nuclease domain-containing protein
SIO_010081: I6G90_RS21360
subclass of: SO_0000673
so part of: I6G90_RS21360
location: 966..>1397
location: region:966-1397:1
so has part: feature:966-1397:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:966-1397:1:exon

I6G90_RS21365
type: Gene
subclass of: SO_0000704
RO_0002162: 656
locus tag: I6G90_RS21365
so part of: sequence
location: 1435..1908
location: region:1435-1908:1
so has part: feature:1435-1908:1:exon
subclass of: SO_0000010

69065141
type: Gene
SIO_000068: ncbigene

position:1435:1
position: 1435
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:1908:1
position: 1908
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1435-1908:1:exon

I6G90_RS21365
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
locus tag: I6G90_RS21365
inference: COORDINATES: protein motif:HMM:NF016710.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeB family mobilization protein
translation: MSKILELAKTFEESSKQQASDIETSVKNAFEPHEKAILAALDSSALRLNAAIDAQSRRWGWLVLKGWVFPLIGVAFLLGISWVVVWYQGRVIAENWVEISRQNKTLEQLAAKGGKLELSTCGKDQRLCVKMDLKELAYGREEESERGEYPWRIPEGY
SIO_010081: I6G90_RS21365
subclass of: SO_0000673
so part of: I6G90_RS21365
location: 1435..1908
location: region:1435-1908:1
so has part: feature:1435-1908:1:exon

WP_017411284.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1435-1908:1:exon

I6G90_RS21240
type: Gene
subclass of: SO_0000704
RO_0002162: 656
locus tag: I6G90_RS21240
old locus tag: I6G90_21235
so part of: sequence
location: 1909..2133
location: region:1909-2133:1
so has part: feature:1909-2133:1:exon
subclass of: SO_0000010

60788188
type: Gene
SIO_000068: ncbigene

position:1909:1
position: 1909
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:2133:1
position: 2133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:1909-2133:1:exon

I6G90_RS21240
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
locus tag: I6G90_RS21240
old locus tag: I6G90_21235
inference: COORDINATES: protein motif:HMM:NF016769.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MbeD family mobilization/exclusion protein
translation: MTELERQLLKALESLEGGYRAQHVAWENAYSDLRRMFEATSTENRALRESVGSLSKQVLHLSGQVETLSQKLKP
SIO_010081: I6G90_RS21240
subclass of: SO_0000673
so part of: I6G90_RS21240
location: 1909..2133
location: region:1909-2133:1
so has part: feature:1909-2133:1:exon

WP_128313264.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:1909-2133:1:exon

I6G90_RS21245
type: Gene
subclass of: SO_0000704
RO_0002162: 656
locus tag: I6G90_RS21245
old locus tag: I6G90_21240
so part of: sequence
location: 2432..3310
location: region:2432-3310:1
so has part: feature:2432-3310:1:exon
subclass of: SO_0000010

60788189
type: Gene
SIO_000068: ncbigene

position:2432:1
position: 2432
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:3310:1
position: 3310
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2432-3310:1:exon

I6G90_RS21245
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
locus tag: I6G90_RS21245
old locus tag: I6G90_21240
EC number: 2.1.1.-
inference: COORDINATES: similar to AA sequence:RefSeq:WP_016518892.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific DNA-methyltransferase
translation: MLQRTKNRLDINTSTLFNADCLSVLKRMDDESIDLIVTSPPYADQRKNTYGGVNPDEYVSWFLPIAKELLRVLRPTGSFVLNIKEKVVNGERHTYVLELIIKMRELGWLWTEEYMWHKKNSFPGKWPNRFRDSWERCLHFTKSKKFHMYQDAVKVPMGDWANSRLKNLSDTDKRRDESKVGSGFGKKIENWKDRKMALPSNVLHLATECSNKSHSAAFPESLPAWFIKLFTQSGDVVLDPFSGSGTTMKVAQDLGRIGIGIELLGEHCLVSAERVNLSKKEKNGFVVFEGAQ
SIO_010081: I6G90_RS21245
subclass of: SO_0000673
so part of: I6G90_RS21245
location: 2432..3310
location: region:2432-3310:1
so has part: feature:2432-3310:1:exon

WP_085946241.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2432-3310:1:exon

I6G90_RS21250
type: Gene
subclass of: SO_0000704
RO_0002162: 656
locus tag: I6G90_RS21250
old locus tag: I6G90_21245
so part of: sequence
location: 3307..4068
location: region:3307-4068:1
so has part: feature:3307-4068:1:exon
subclass of: SO_0000010

60788190
type: Gene
SIO_000068: ncbigene

position:3307:1
position: 3307
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4068:1
position: 4068
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3307-4068:1:exon

I6G90_RS21250
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 656
locus tag: I6G90_RS21250
old locus tag: I6G90_21245
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012763663.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: PmeII family type II restriction endonuclease
translation: MIDSATISDFIVSNVDGDFHKKKELKISSLKLVDITKRKNPYLFKAKGMNNASDLIKSIMDATVSSGEETVFGNFMEKVAIFTCSQALGGRKSSATGIDLEFERGGVKYLVSIKSGPNWGNSSQIKKMKDNFLLAKKVLGTSGGMSSQSIFCVEGCCYGYESSPDKGTHIKMCGEDFWGFISDGNSNLYKDIIEPFGRTAKERNEELQLLIDAKLNLFTAEFVSKYCNQFGVINWELLVQDNSGSRAGSNKPW
SIO_010081: I6G90_RS21250
subclass of: SO_0000673
so part of: I6G90_RS21250
location: 3307..4068
location: region:3307-4068:1
so has part: feature:3307-4068:1:exon

WP_080602840.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3307-4068:1:exon