Gloeothece citriformis PCC 7424 plasmid pP742401, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Gloeothece; Gloeothece citriformis.
Complete sequence of plasmid1 of Cyanothece sp. PCC 7424
Submitted (11-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001292.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4024136\nSource DNA and bacteria available from Himadri Pakrasi\n(pakrasi@biology2.wustl.edu)\nContacts: Himadri Pakrasi (pakrasi@biology2.wustl.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/10/2023 02:55:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,937\nCDSs (total) :: 5,878\nGenes (coding) :: 5,768\nCDSs (with protein) :: 5,768\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 110\nCDSs (without protein) :: 110\nPseudo Genes (ambiguous residues) :: 0 of 110\nPseudo Genes (frameshifted) :: 30 of 110\nPseudo Genes (incomplete) :: 76 of 110\nPseudo Genes (internal stop) :: 21 of 110\nPseudo Genes (multiple problems) :: 16 of 110\nCRISPR Arrays :: 12\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Gloeothece citriformis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_012593039.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_007307641.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012599486.1
ISAs1-like element ISCysp8 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012599551.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599624.1
COORDINATES: protein motif:HMM:TIGR02937.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
sigma-70 family RNA polymerase sigma factor
COORDINATES: similar to AA sequence:RefSeq:WP_012599553.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334766.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334767.1
COORDINATES: protein motif:HMM:NF015803.2
ShlB/FhaC/HecB family hemolysin secretion/activation protein
COORDINATES: protein motif:HMM:NF017658.2
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: similar to AA sequence:RefSeq:WP_013334933.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334934.1
COORDINATES: protein motif:HMM:NF033545.0
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024954.2
winged helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF033590.1
COORDINATES: similar to AA sequence:RefSeq:WP_007313580.1
COORDINATES: similar to AA sequence:RefSeq:WP_017655704.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
RAMP superfamily CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334238.1
COORDINATES: protein motif:HMM:NF013842.2
COORDINATES: protein motif:HMM:NF025056.2
toll/interleukin-1 receptor domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_006098102.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334735.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_012599651.1
COORDINATES: similar to AA sequence:RefSeq:WP_015137436.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_015955833.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
IS5-like element ISCysp19 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012597149.1
COORDINATES: protein motif:HMM:TIGR02397.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334670.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334669.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334668.1
ISAs1-like element ISCysp7 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_012599547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334753.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334752.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325601.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013325600.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325596.1
COORDINATES: similar to AA sequence:RefSeq:WP_015954541.1
COORDINATES: similar to AA sequence:RefSeq:WP_007357649.1
COORDINATES: similar to AA sequence:RefSeq:WP_017290673.1
isoaspartyl peptidase/L-asparaginase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012411029.1
COORDINATES: similar to AA sequence:RefSeq:WP_015954044.1
COORDINATES: similar to AA sequence:RefSeq:WP_015159323.1
COORDINATES: similar to AA sequence:RefSeq:WP_008278923.1
COORDINATES: similar to AA sequence:RefSeq:WP_006509979.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599530.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325738.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325586.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013325587.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325588.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325589.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334960.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325591.1
COORDINATES: protein motif:HMM:NF015688.2
COORDINATES: similar to AA sequence:RefSeq:WP_002788809.1
COORDINATES: similar to AA sequence:RefSeq:WP_015184040.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334520.1
GO:0009235 - cobalamin metabolic process [Evidence IEA]
methylmalonic aciduria and homocystinuria type D protein
COORDINATES: similar to AA sequence:RefSeq:WP_012599614.1
COORDINATES: similar to AA sequence:RefSeq:WP_012597294.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016864436.1
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_009756714.1
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_010468062.1
COORDINATES: similar to AA sequence:RefSeq:WP_016875441.1
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019508654.1
TetR/AcrR family transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007352896.1
COORDINATES: similar to AA sequence:RefSeq:WP_008384056.1
COORDINATES: protein motif:HMM:NF012655.2
COORDINATES: similar to AA sequence:RefSeq:WP_015196723.1
COORDINATES: similar to AA sequence:RefSeq:WP_012410158.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324024.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324025.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324026.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593089.1
GO:0030089 - phycobilisome [Evidence IEA]
GO:0015979 - photosynthesis [Evidence IEA]
phycobilisome rod-core linker polypeptide
COORDINATES: similar to AA sequence:RefSeq:WP_012599691.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324029.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324030.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324031.1
15,16-dihydrobiliverdin:ferredoxin oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_015174906.1
phycoerythrobilin:ferredoxin oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013324039.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324038.1
COORDINATES: similar to AA sequence:RefSeq:WP_011932400.1
COORDINATES: similar to AA sequence:RefSeq:WP_045870829.1
COORDINATES: similar to AA sequence:RefSeq:WP_013324035.1
COORDINATES: protein motif:HMM:NF019540.2
type II toxin-antitoxin system HicA family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017652987.1
type II toxin-antitoxin system HicB family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_013324033.1
COORDINATES: similar to AA sequence:RefSeq:WP_017748907.1
TOMM precursor leader peptide-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_006104406.1
COORDINATES: similar to AA sequence:RefSeq:WP_013320763.1
COORDINATES: similar to AA sequence:RefSeq:WP_013320764.1
COORDINATES: similar to AA sequence:RefSeq:WP_013320773.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612309.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860222.1
COORDINATES: similar to AA sequence:RefSeq:WP_015181683.1
COORDINATES: similar to AA sequence:RefSeq:WP_006512432.1
COORDINATES: similar to AA sequence:RefSeq:WP_017320428.1
aspartate aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015188204.1
COORDINATES: protein motif:HMM:NF012873.2
COORDINATES: similar to AA sequence:RefSeq:WP_015188199.1
COORDINATES: protein motif:HMM:NF024880.2
COORDINATES: similar to AA sequence:RefSeq:WP_015207065.1
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF003417.0
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:TIGR01783.1
GO:0019867 - outer membrane [Evidence IEA]
GO:0015343 - siderophore-iron transmembrane transporter activity [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013648.2
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_016866935.1
COORDINATES: similar to AA sequence:RefSeq:WP_015207074.1
COORDINATES: similar to AA sequence:RefSeq:WP_016875661.1
COORDINATES: similar to AA sequence:RefSeq:WP_015155695.1
COORDINATES: similar to AA sequence:RefSeq:WP_015193857.1
COORDINATES: similar to AA sequence:RefSeq:WP_012412053.1
COORDINATES: similar to AA sequence:RefSeq:WP_011319344.1
frameshifted; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076611717.1
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF013793.2
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: similar to AA sequence:RefSeq:WP_013334330.1
COORDINATES: similar to AA sequence:RefSeq:WP_015156744.1
polysaccharide ABC transporter ATP-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334332.1
COORDINATES: similar to AA sequence:RefSeq:WP_016874305.1
COORDINATES: similar to AA sequence:RefSeq:WP_016860726.1
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_003595502.1
COORDINATES: similar to AA sequence:RefSeq:WP_017312026.1
COORDINATES: similar to AA sequence:RefSeq:WP_009458692.1
COORDINATES: protein motif:HMM:NF024914.2
COORDINATES: protein motif:HMM:NF013652.2
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: similar to AA sequence:RefSeq:WP_017292529.1
COORDINATES: similar to AA sequence:RefSeq:WP_015138209.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334346.1
COORDINATES: protein motif:HMM:NF015007.2
COORDINATES: similar to AA sequence:RefSeq:WP_013334347.1
COORDINATES: similar to AA sequence:RefSeq:WP_009149868.1
COORDINATES: protein motif:HMM:TIGR01536.1
GO:0004066 - asparagine synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006529 - asparagine biosynthetic process [Evidence IEA]
asparagine synthase (glutamine-hydrolyzing)
COORDINATES: similar to AA sequence:RefSeq:WP_017292519.1
COORDINATES: similar to AA sequence:RefSeq:WP_019499473.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999364.1
COORDINATES: similar to AA sequence:RefSeq:WP_017324032.1
COORDINATES: similar to AA sequence:RefSeq:WP_010999366.1
COORDINATES: protein motif:HMM:NF024776.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF024751.2
COORDINATES: protein motif:HMM:NF024980.2
COORDINATES: protein motif:HMM:NF017829.2
COORDINATES: protein motif:HMM:NF017076.2
COORDINATES: similar to AA sequence:RefSeq:WP_015955362.1
Rpn family recombination-promoting nuclease/putative transposase
COORDINATES: similar to AA sequence:RefSeq:WP_013335023.1
COORDINATES: similar to AA sequence:RefSeq:WP_019508103.1
COORDINATES: similar to AA sequence:RefSeq:WP_012160769.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013814316.1
COORDINATES: protein motif:HMM:NF012298.2
COORDINATES: similar to AA sequence:RefSeq:WP_008276777.1
COORDINATES: similar to AA sequence:RefSeq:WP_006278642.1
COORDINATES: protein motif:HMM:NF026057.2
transposase DNA-binding-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_015195722.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_015364314.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211997.1
COORDINATES: protein motif:HMM:TIGR00758.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211825.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334510.1
COORDINATES: protein motif:HMM:TIGR03985.1
TIGR03985 family CRISPR-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_015201664.1
GO:0003674 - molecular_function [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015158969.1
type II toxin-antitoxin system PrlF family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_009630884.1
type II toxin-antitoxin system YhaV family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017307934.1
GO:0003964 - RNA-directed DNA polymerase activity [Evidence IEA]
GO:0000373 - Group II intron splicing [Evidence IEA]
group II intron reverse transcriptase/maturase
COORDINATES: similar to AA sequence:RefSeq:WP_006106276.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017307932.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012599660.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF014898.2
GO:0015074 - DNA integration [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005103543.1
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013191088.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334808.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611868.1
COORDINATES: similar to AA sequence:RefSeq:WP_008274984.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334585.1
COORDINATES: protein motif:HMM:NF017775.2
GO:1904680 - peptide transmembrane transporter activity [Evidence IEA]
GO:0015833 - peptide transport [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013334584.1
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF015527.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334583.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334582.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334581.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334580.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334579.1
polysaccharide pyruvyl transferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334578.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334572.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334573.1
sulfotransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334574.1
COORDINATES: similar to AA sequence:RefSeq:WP_002752286.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334576.1
COORDINATES: similar to AA sequence:RefSeq:WP_015162591.1
internal stop; incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024835.2
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013334785.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334775.1
COORDINATES: similar to AA sequence:RefSeq:WP_012596440.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_012596441.1