Gloeothece citriformis PCC 7424 plasmid pP742402, complete sequence.
Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Gloeothece; Gloeothece citriformis.
Complete sequence of plasmid2 of Cyanothece sp. PCC 7424
Submitted (11-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP001293.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4024136\nSource DNA and bacteria available from Himadri Pakrasi\n(pakrasi@biology2.wustl.edu)\nContacts: Himadri Pakrasi (pakrasi@biology2.wustl.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/10/2023 02:55:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,937\nCDSs (total) :: 5,878\nGenes (coding) :: 5,768\nCDSs (with protein) :: 5,768\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 110\nCDSs (without protein) :: 110\nPseudo Genes (ambiguous residues) :: 0 of 110\nPseudo Genes (frameshifted) :: 30 of 110\nPseudo Genes (incomplete) :: 76 of 110\nPseudo Genes (internal stop) :: 21 of 110\nPseudo Genes (multiple problems) :: 16 of 110\nCRISPR Arrays :: 12\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
reference strain of Gloeothece citriformis
COORDINATES: protein motif:HMM:NF013124.2
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_009547533.1
COORDINATES: similar to AA sequence:RefSeq:WP_015447566.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_019503302.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF026979.2
papain fold toxin domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013325648.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325699.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325647.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325646.1
COORDINATES: similar to AA sequence:RefSeq:WP_006670411.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_006635796.1
COORDINATES: similar to AA sequence:RefSeq:WP_015186344.1
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF013561.2
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
ribbon-helix-helix domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008277976.1
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF024793.2
COORDINATES: similar to AA sequence:RefSeq:WP_007304190.1
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013335035.1
COORDINATES: similar to AA sequence:RefSeq:WP_013335034.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334547.1
COORDINATES: similar to AA sequence:RefSeq:WP_013335023.1
COORDINATES: similar to AA sequence:RefSeq:WP_006100058.1
COORDINATES: similar to AA sequence:RefSeq:WP_002798098.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
type II toxin-antitoxin system Phd/YefM family antitoxin
type II toxin-antitoxin system VapC family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_017717504.1
COORDINATES: similar to AA sequence:RefSeq:WP_016515525.1
COORDINATES: similar to AA sequence:RefSeq:WP_002771672.1
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_016862335.1
nuclear transport factor 2 family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015163146.1
COORDINATES: similar to AA sequence:RefSeq:WP_016516279.1
COORDINATES: protein motif:HMM:NF021634.2
COORDINATES: similar to AA sequence:RefSeq:WP_013334644.1
COORDINATES: similar to AA sequence:RefSeq:WP_006529757.1
COORDINATES: similar to AA sequence:RefSeq:WP_012409591.1
COORDINATES: similar to AA sequence:RefSeq:WP_007352860.1
COORDINATES: similar to AA sequence:RefSeq:WP_002741513.1
COORDINATES: similar to AA sequence:RefSeq:WP_002782439.1
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: similar to AA sequence:RefSeq:WP_012599486.1
ISAs1-like element ISCysp8 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_002733125.1
COORDINATES: protein motif:HMM:NF024180.2
COORDINATES: protein motif:HMM:NF013594.2
COORDINATES: similar to AA sequence:RefSeq:WP_013335114.1
COORDINATES: protein motif:HMM:NF018259.2
COORDINATES: similar to AA sequence:RefSeq:WP_013325644.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325703.1
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013325704.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325638.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325637.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599507.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325635.1
COORDINATES: protein motif:HMM:NF016232.2
COORDINATES: protein motif:HMM:NF012372.2
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013325609.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325633.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325630.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325629.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325628.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325627.1
COORDINATES: protein motif:HMM:NF017256.2
COORDINATES: similar to AA sequence:RefSeq:WP_013325626.1
MobC family plasmid mobilization relaxosome protein
COORDINATES: similar to AA sequence:RefSeq:WP_013325625.1
relaxase/mobilization nuclease domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_041238570.1
IS701-like element ISCysp20 family transposase
COORDINATES: protein motif:HMM:NF015748.2
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: protein motif:HMM:NF024935.2
COORDINATES: similar to AA sequence:RefSeq:WP_012599663.1
COORDINATES: protein motif:HMM:NF012301.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012599530.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325738.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325586.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013325587.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325588.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325589.1
type IV secretion system DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013334960.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325729.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325593.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325594.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325595.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325600.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325601.1
LuxR C-terminal-related transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_013334752.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334753.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599547.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599623.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599624.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599627.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325515.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325516.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325517.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013325518.1
filamentous hemagglutinin N-terminal domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013325519.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325520.1
COORDINATES: protein motif:HMM:NF017829.2
COORDINATES: similar to AA sequence:RefSeq:WP_013325522.1
COORDINATES: similar to AA sequence:RefSeq:WP_016877622.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_012627555.1
COORDINATES: similar to AA sequence:RefSeq:WP_013320599.1
COORDINATES: similar to AA sequence:RefSeq:WP_015221246.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: similar to AA sequence:RefSeq:WP_019503465.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325694.1
COORDINATES: similar to AA sequence:RefSeq:WP_013334865.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325572.1
zincin-like metallopeptidase domain-containing protein
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: similar to AA sequence:RefSeq:WP_013334872.1
COORDINATES: similar to AA sequence:RefSeq:WP_013325661.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013325656.1
COORDINATES: similar to AA sequence:RefSeq:WP_008278295.1
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02397.1
COORDINATES: protein motif:HMM:NF024873.2
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:NF005638.0
COORDINATES: similar to AA sequence:RefSeq:WP_015784601.1
COORDINATES: similar to AA sequence:RefSeq:WP_007309177.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015189441.1
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015189440.1
type I-MYXAN CRISPR-associated endonuclease Cas4/Cas1
COORDINATES: similar to AA sequence:RefSeq:WP_013334848.1
COORDINATES: similar to AA sequence:RefSeq:WP_002749876.1
GO:0003674 - molecular_function [Evidence IEA]
type I-MYXAN CRISPR-associated protein Cas5/Cmx5/DevS
COORDINATES: similar to AA sequence:RefSeq:WP_002749877.1
DevR family CRISPR-associated autoregulator
COORDINATES: similar to AA sequence:RefSeq:WP_012241781.1
type I-MYXAN CRISPR-associated Cas8a1/Cmx1
COORDINATES: similar to AA sequence:RefSeq:WP_015123921.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002749880.1
type I-MYXAN CRISPR-associated protein Cas6/Cmx6
COORDINATES: similar to AA sequence:RefSeq:WP_017303321.1
COORDINATES: similar to AA sequence:RefSeq:WP_015224026.1
COORDINATES: similar to AA sequence:RefSeq:WP_015211892.1
COORDINATES: protein motif:HMM:NF016283.2
COORDINATES: similar to AA sequence:RefSeq:WP_009782159.1
GO:0004518 - nuclease activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015954780.1
COORDINATES: similar to AA sequence:RefSeq:WP_015784952.1
ssl1498 family light-harvesting-like protein
COORDINATES: similar to AA sequence:RefSeq:WP_015112000.1
COORDINATES: similar to AA sequence:RefSeq:WP_012593109.1
COORDINATES: similar to AA sequence:RefSeq:WP_012599673.1
COORDINATES: similar to AA sequence:RefSeq:WP_013335120.1
COORDINATES: similar to AA sequence:RefSeq:WP_011316357.1