Gloeothece citriformis PCC 7424 plasmid pP742406, complete sequence.
type: Entry
definition: Gloeothece citriformis PCC 7424 plasmid pP742406, complete sequence.
sequence version: NC_011734.1
sequence date: 2023-03-10
sequence: sequence
division: CON
label: NC_011734.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00000286
keyword: RefSeq
source: Gloeothece citriformis PCC 7424
organism: Gloeothece citriformis PCC 7424
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Gloeothece; Gloeothece citriformis.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001297.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4024136\nSource DNA and bacteria available from Himadri Pakrasi\n(pakrasi@biology2.wustl.edu)\nContacts: Himadri Pakrasi (pakrasi@biology2.wustl.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/10/2023 02:55:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,937\nCDSs (total) :: 5,878\nGenes (coding) :: 5,768\nCDSs (with protein) :: 5,768\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 110\nCDSs (without protein) :: 110\nPseudo Genes (ambiguous residues) :: 0 of 110\nPseudo Genes (frameshifted) :: 30 of 110\nPseudo Genes (incomplete) :: 76 of 110\nPseudo Genes (internal stop) :…

sequence
subclass of: SO_0000155
sequence length: 15219
topology: circular
so has quality: SO_0000988
location: 1..15219
location: region:1-15219:1
RO_0002162: 65393

NC_011734
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00000286
type: BioSample
SIO_000068: biosample

1
title: Complete sequence of plasmid6 of Cyanothece sp. PCC 7424
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikhailova, N.
author: Liberton, M.
author: Stoeckel, J.
author: Banerjee, A.
author: Singh, A.
author: Page, L.
author: Sato, H.
author: Zhao, L.
author: Sherman, L.
author: Pakrasi, H.
author: Richardson, P.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikhailova, N.
author: Liberton, M.
author: Stoeckel, J.
author: Banerjee, A.
author: Singh, A.
author: Page, L.
author: Sato, H.
author: Zhao, L.
author: Sherman, L.
author: Pakrasi, H.
author: Richardson, P.
journal: Submitted (11-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15219:1
position: 15219
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-15219:1:source
so part of: sequence
organism: Gloeothece citriformis PCC 7424
mol type: genomic DNA
strain: PCC 7424
type material: reference strain of Gloeothece citriformis
plasmid: pP742406

65393
type: Taxonomy
SIO_000068: taxonomy

PCC7424_RS31125
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS31125
so part of: sequence
location: join(15008..15219,1..46)
location: region:1-15219:1
so has part: feature:15008-15219:1:exon
so has part: feature:1-46:1:exon
subclass of: SO_0000010

urn:…
SIO_000300: 1
SIO_000628: feature:15008-15219:1:exon

position:15008:1
position: 15008
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:1-46:1:exon

position:46:1
position: 46
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

PCC7424_RS31125
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS31125
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGAVSEYKLERKQLTQVIPGRTRVAISQRKVRRTSINDLITEVMAKISLINEKISFIKSSKRELRLHSTDIREEVFSRWLERSEE
SIO_010081: PCC7424_RS31125
subclass of: SO_0000673
so part of: PCC7424_RS31125
location: join(15008..15219,1..46)
location: region:1-15219:1
so has part: feature:15008-15219:1:exon
so has part: feature:1-46:1:exon

WP_157867694.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15008-15219:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:1-46:1:exon

PCC7424_RS28950
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28950
old locus tag: PCC7424_5615
so part of: sequence
location: complement(163..972)
location: region:163-972:-1
so has part: feature:163-972:-1:exon
subclass of: SO_0000010

position:163:-1
position: 163
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:972:-1
position: 972
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:163-972:-1:exon

PCC7424_RS28950
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28950
old locus tag: PCC7424_5615
inference: COORDINATES: protein motif:HMM:NF040132.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MGSNVDSFGMTSDPQGNFYILTQDPRYPNDAVLLSSPPTLDTWYEQLLGNPGFDGLPRGDVAINSTNQKAYVTFSNSVIAVTDIIPPTPPTPPTPPTPSTPPTPSTTPDDLTGGVNGVLTDAVYRFYNATSRGHFFTTNTAERDNVLANPQWGYTFEGVGFEASTTPGDNLLPVFRFYNATSRGHFFTTNTAERDNVLANPQWGYTFEGIGFYAYGANANLASDVYRFYNSTSQGHFFTINPAERDTVLAHSEWGYTFEGTGFEANGIS
SIO_010081: PCC7424_RS28950
subclass of: SO_0000673
so part of: PCC7424_RS28950
location: complement(163..972)
location: region:163-972:-1
so has part: feature:163-972:-1:exon

WP_012599407.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:163-972:-1:exon

PCC7424_RS28955
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28955
old locus tag: PCC7424_5616
so part of: sequence
location: complement(978..2261)
location: region:978-2261:-1
so has part: feature:978-2261:-1:exon
subclass of: SO_0000010

position:978:-1
position: 978
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2261:-1
position: 2261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:978-2261:-1:exon

PCC7424_RS28955
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28955
old locus tag: PCC7424_5616
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MNTKQIRTLLLGELIASELPFKIESDSLILQKAETLAKEKLQSLAEAPDFISKMKLTFGENADPTKLQADWGTGDFTVIPKIEVRSPSEINGANGAYAAAIDRIFISQDFLYQNARNIEAIASVVLEEIGHAVDSQLNVLDSPGDEGEIFSSLAQGIELSELKLQRLKAEDDTVTVNVDGQNLQIEQATSVFVNNLPSANGVLVDSQENVLVSMLGLNEQTLQNETLIAKFTSNGQLINAKIFGFNRKIKMAAAPSLGGAIGLQDDGLVFRLDTNTLTGYPLFNIRQLPTIDTSAVYDYTTDFVYKPGSASGVSPQTATYNDIAVRENGSVTELFLTGDSIGSGLSPFIMRIRLDTREAKVLISGHRAGIAPQLPSPGIAVNPQGKVITTLPKADYLVTHPHLITFSADFNLSRLILILTTRFNLKN
SIO_010081: PCC7424_RS28955
subclass of: SO_0000673
so part of: PCC7424_RS28955
location: complement(978..2261)
location: region:978-2261:-1
so has part: feature:978-2261:-1:exon

WP_012599408.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:978-2261:-1:exon

PCC7424_RS28960
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28960
old locus tag: PCC7424_5617
so part of: sequence
location: complement(2942..3850)
location: region:2942-3850:-1
so has part: feature:2942-3850:-1:exon
subclass of: SO_0000010

position:2942:-1
position: 2942
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3850:-1
position: 3850
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2942-3850:-1:exon

PCC7424_RS28960
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28960
old locus tag: PCC7424_5617
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015214438.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTRQPHDQFAKEYLEELLTPLGKVETSRDVKSEVREIDVWFVPTPENNPNVPSLGLLSQMAATSCLFEPYRNAPTEIEIRSCLLKLYTVHGEILRKAKREKQSLSEAELPFLWILSPSCSVRMLEGFGAKLNLKGNWGEGVYFLHSFLKTAIIAINQLPVTPDTLWLRVLGKGGTQRQAVEELVNLPEDNPFRDNLLKILASWRKTLELKDNRSEEERELIMNLSPAYVQQCEAWKEEGKLEGQSLMVALLLEGRFGALDEELKSLIPQIVQITPSERAQILINLANLERKELIARILGSEN
SIO_010081: PCC7424_RS28960
subclass of: SO_0000673
so part of: PCC7424_RS28960
location: complement(2942..3850)
location: region:2942-3850:-1
so has part: feature:2942-3850:-1:exon

WP_012599409.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2942-3850:-1:exon

PCC7424_RS28965
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28965
old locus tag: PCC7424_5618
so part of: sequence
location: 3920..4204
location: region:3920-4204:1
so has part: feature:3920-4204:1:exon
subclass of: SO_0000010

position:3920:1
position: 3920
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:4204:1
position: 4204
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3920-4204:1:exon

PCC7424_RS28965
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28965
old locus tag: PCC7424_5618
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012599393.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MPNSLTTSEPNVLHPEDFDPPLKRKEPIVPYYWTLDEIATELGVTSRRVGYDITGYPPRKIQPSLKAYKAGSLFLVPDADALAYIQRFRERKKS
SIO_010081: PCC7424_RS28965
subclass of: SO_0000673
so part of: PCC7424_RS28965
location: 3920..4204
location: region:3920-4204:1
so has part: feature:3920-4204:1:exon

WP_012599410.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3920-4204:1:exon

PCC7424_RS28970
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28970
old locus tag: PCC7424_5619
so part of: sequence
location: 4342..7353
location: region:4342-7353:1
so has part: feature:4342-7353:1:exon
subclass of: SO_0000010

position:4342:1
position: 4342
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:7353:1
position: 7353
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4342-7353:1:exon

PCC7424_RS28970
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28970
old locus tag: PCC7424_5619
inference: COORDINATES: protein motif:HMM:NF024367.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF3854 domain-containing protein
translation: MINPTLNGQEQASVPKFPAAINSRTTTNTDLHQNINSGYSEWSKSLVKPSLIQANVIPFGPGEAWDWLIYSDLIPRRNTGVLTYGVLKQYDHFEKSGGWLVQNINPVTGEDSLYNRAKFDHPRVGSDGKVIKYESPPKTPTDPIFLKVPHEICHDVWSDVANVNNIPLPPSSEDPPHFWEWFKNSSAPLWITEGEKKAGCLLSKGRVTTSVPGINNYHDVKLKQEKNILKLHPYLEHFADGRDIIITFDRDEKPKTRVAVRKAIKKLGKLFKDKGCNVKICIWDGKKGKGIDDFLANGNTLSDCQYLTFERYCAGAERIEKYKGASHPVGEKINSRYIGNVSLPDARIIALKAPKGTGKTTLMAQLSQQFKDEGKAVITVSHRRNLAQHQSNLFGLRYRDEMVANSDHRKEGFLFGFGVVIDSLSLKSKFKFDVDRWIDSGQPYVVFLDEIEQLLWHLLDSNTEVKNNRLEIEENFRKLLSHAYRVVIGDADLSDLSLDYLINVMGIEDKKEVFLLENTYKGENNYTAYMYQDNTPEALIADLIDDLGELANTPPESRKPHFIFTHAREHKSLYSAVNLKRLINKYYSSLKVLVLDANTVVDPNNEAFGGVLELNNLIPKYDVIIASPVIETGVSIDKEHQFSCVWAIGQGVIPTDSVRQTLSRVRDNCDRRVWLPKRGLNKIGNGATNVKSLLETEGQKFQAHTTILRRFDWDEEADASTGIALDTWGKMACRINYGYMFYRDVAAEELEAEGNTIIWNEKTDYKALRNLRKRVSKNRDDSYNSELDKTEQTPSPTSEELKVLETKLTKTETERRQLKRGKLEKKYKVPFSASLAVEDDKNLHPKLRFYYYLTIGRKHLPERDKKVASSQVYKGKAWLPDFNKSQFGFLVHIFDKFGATKIFSMEEQEFSMDSEILKAIVEEALKYERDLKKLNITVSRELSVMQNINNLFKPTGMYFPFLRKIRDGERRIRIYGSPRFRFDHQICEEILKAWLAADESRSS
SIO_010081: PCC7424_RS28970
subclass of: SO_0000673
so part of: PCC7424_RS28970
location: 4342..7353
location: region:4342-7353:1
so has part: feature:4342-7353:1:exon

WP_012599411.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:4342-7353:1:exon

PCC7424_RS29585
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
gene: mobQ
locus tag: PCC7424_RS29585
old locus tag: PCC7424_5620
so part of: sequence
location: complement(7833..10013)
location: region:7833-10013:-1
so has part: feature:7833-10013:-1:exon
subclass of: SO_0000010

position:7833:-1
position: 7833
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:10013:-1
position: 10013
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7833-10013:-1:exon

PCC7424_RS29585
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
gene: mobQ
locus tag: PCC7424_RS29585
old locus tag: PCC7424_5620
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012599394.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: MobQ family relaxase
translation: MAIYHLNAKVISRGKGKSSTAAAAYRAGEKIHDERTGLTFDYTRKRGVYATEILAPLNAPNWVYNREKLWNAVELFETRSNSRLAREFDIALPVELNHQQKRELVREFVRGQIVNNGLVADVAFHDMNSHNPHVHILLTTREITPLGLGSKVRDLDKKDFLLQIRESWANYTNEALSNAGNTERIDHRTLSEQGINRIPQIHLGPDVAAMMDKGIVTERSQAYLTIEAANKKIEALERQLTQIAETIKPIEEDELELLELELPNQSVDTLKSDEQSEREREETTESRLTDLTAEFDRLAERLRGSGQQDRKSREQAKPTVQPTEPTIPNIDNAASRLSELAKRLKPTEERDSETTGVPRSSVESQTSTSKNRTDPAIPTEVPTNTNLVGRPHLHHKGSSKPVADVGNSRGTDSVAHAPDSTPPAAKPTKPNKRPSKQHRNPVRQDREAVAQVTPTPKKQPEKVTPTPKKEPEKPNTQLTDAQLVERMRLFVQWEKTVPSPPDENKRKRLTEKFEAQKKELRKLSNSISTQKQFLSDNPPRSWKNPFGLDPDLYSSKEYDLSNSRYHYTNLQQKQKNTLSELADLSAEETKYNNWLSSPETQKMMELEKQLYSPELSERINQLMAVYQTYHNALTILEKRGVKTANKSYFAGNIYRVEKVDNTLTLTHKDKENPILVVTDNRDTGGIIDIIQCDLTDEDFETMEKAAEYVSRPPIQQVQKHRGGLSR
SIO_010081: PCC7424_RS29585
subclass of: SO_0000673
so part of: PCC7424_RS29585
location: complement(7833..10013)
location: region:7833-10013:-1
so has part: feature:7833-10013:-1:exon

WP_012599412.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7833-10013:-1:exon

PCC7424_RS28985
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28985
old locus tag: PCC7424_5621
so part of: sequence
location: 10292..10807
location: region:10292-10807:1
so has part: feature:10292-10807:1:exon
subclass of: SO_0000010

position:10292:1
position: 10292
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10807:1
position: 10807
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10292-10807:1:exon

PCC7424_RS28985
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28985
old locus tag: PCC7424_5621
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009547968.1
GO function: GO:0003735 - structural constituent of ribosome [Evidence IEA]
GO process: GO:0006412 - translation [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: ribosomal protein L7/L12
translation: MNKRLEQLLKKKEQLNAQIQKIKTRESAEKKKEDTRRKILLGALVMEMMDRKELDRDKIMKRLEGFLVRDIDRRLFDFSVEETVNEQASTSTTEEKPQTFEVIIDEVPTEHKIAILKAVRTVTGFELKEAKELVESAPKLLIKVENQSSAEGIKKQLEKAGARVSLKSIKA
SIO_010081: PCC7424_RS28985
subclass of: SO_0000673
so part of: PCC7424_RS28985
location: 10292..10807
location: region:10292-10807:1
so has part: feature:10292-10807:1:exon

WP_012599413.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10292-10807:1:exon

PCC7424_RS28990
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28990
old locus tag: PCC7424_5622
so part of: sequence
location: complement(10797..11558)
location: region:10797-11558:-1
so has part: feature:10797-11558:-1:exon
subclass of: SO_0000010

position:10797:-1
position: 10797
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:11558:-1
position: 11558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10797-11558:-1:exon

PCC7424_RS28990
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28990
old locus tag: PCC7424_5622
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012599396.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: GIY-YIG nuclease family protein
translation: MPESSKTTAITFRCPSDVIDSIDGQAKATHQNRTDVLVDLILGSVPNVKVTERQKLPPLPAIYFVFTPDKRLLYIGKADNLQKRWNNHYKYQYFVETSLDCRIGYFTLDSADNLDEVIEEFKQESVSTPQENILVTNGQLNELRQELYSLKRRFDIAFASLSQFGLDNLLKRFEAVKPPRGKQTWQPTSEDQKQGITRSNLMKHFGFNSTPDLESAALFYSLDPDKYLEELSGWQCKPMDKSNSRTRFFPPKP
SIO_010081: PCC7424_RS28990
subclass of: SO_0000673
so part of: PCC7424_RS28990
location: complement(10797..11558)
location: region:10797-11558:-1
so has part: feature:10797-11558:-1:exon

WP_012599414.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10797-11558:-1:exon

PCC7424_RS28995
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28995
old locus tag: PCC7424_5623
so part of: sequence
location: 12418..13209
location: region:12418-13209:1
so has part: feature:12418-13209:1:exon
subclass of: SO_0000010

position:12418:1
position: 12418
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13209:1
position: 13209
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12418-13209:1:exon

PCC7424_RS28995
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28995
old locus tag: PCC7424_5623
inference: COORDINATES: protein motif:HMM:NF025448.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF4263 domain-containing protein
translation: MELFKNWPSIIKEFINYPAKVQIAWFLTLIVIIGWILFLTSWSKEKIEEKNKKNTINQNNSKVEEEKISKEPFSENSEQNKQHFEKLISESSDLNKIKQFIENHKTVLNGAPQELAGKPLIEDLRDFPIQDDLVPNFTRFNFQSDISQIVNFIIFFDFLSPNDNIFEQEQNFTEVVLNKLSRMKKYILTARSNYSKYVNSAAKVENFSIPLSKMDGYSQTIFEGIIIVGRRNYLSAKQIEYLSAFNKDYNNDIKIITYDVLLE
SIO_010081: PCC7424_RS28995
subclass of: SO_0000673
so part of: PCC7424_RS28995
location: 12418..13209
location: region:12418-13209:1
so has part: feature:12418-13209:1:exon

WP_012599415.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12418-13209:1:exon

PCC7424_RS30225
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS30225
so part of: sequence
location: 13501..13650
location: region:13501-13650:1
so has part: feature:13501-13650:1:exon
subclass of: SO_0000010

position:13501:1
position: 13501
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:13650:1
position: 13650
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13501-13650:1:exon

PCC7424_RS30225
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS30225
inference: COORDINATES: protein motif:HMM:NF024139.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: helix-turn-helix domain-containing protein
translation: MTLKEVQALTGLSRDTLREAITDGQLKAQIVGKAWRVKRKDLEEYIENL
SIO_010081: PCC7424_RS30225
subclass of: SO_0000673
so part of: PCC7424_RS30225
location: 13501..13650
location: region:13501-13650:1
so has part: feature:13501-13650:1:exon

WP_239005536.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13501-13650:1:exon

PCC7424_RS29000
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS29000
old locus tag: PCC7424_5624
so part of: sequence
location: 13824..14087
location: region:13824-14087:1
so has part: feature:13824-14087:1:exon
subclass of: SO_0000010

position:13824:1
position: 13824
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14087:1
position: 14087
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13824-14087:1:exon

PCC7424_RS29000
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS29000
old locus tag: PCC7424_5624
inference: COORDINATES: similar to AA sequence:RefSeq:WP_009544456.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTTVTEADIKELKELIVKQSEQLNSIDKRLAVIEARLDEWKPMIQKIPDLAEKVGELKNWKQFFLLGVTSLGSGLIGWLIRGGNRLQ
SIO_010081: PCC7424_RS29000
subclass of: SO_0000673
so part of: PCC7424_RS29000
location: 13824..14087
location: region:13824-14087:1
so has part: feature:13824-14087:1:exon

WP_012599416.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13824-14087:1:exon

PCC7424_RS29005
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS29005
old locus tag: PCC7424_5625
so part of: sequence
location: 14169..14990
location: region:14169-14990:1
so has part: feature:14169-14990:1:exon
subclass of: SO_0000010

position:14169:1
position: 14169
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:14990:1
position: 14990
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:14169-14990:1:exon

PCC7424_RS29005
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS29005
old locus tag: PCC7424_5625
inference: COORDINATES: similar to AA sequence:RefSeq:WP_012599417.1
GO function: GO:0003677 - DNA binding [Evidence IEA]
GO process: GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: tyrosine-type recombinase/integrase
translation: MNSITRATSDTEIILLWLNGKSKTTIISYQCHIKQFLEFVGKPLRDVTLDDLSLWVNRLNLTYQPVTVANKILTVKSLFSFACRVGYLTVNVGSFIKSPKLKDTLAERILEKAEVKRLINATPNERDSVLLSLMYGCGLRVSEVCGLNWSDLRNGKATVFGKGAKTRVVIIPPNLWDRLMQLPRDGEAVFMSRRGNRLERTYIHKMIKECCHKSGVSEKASSHWLRHSHASHAVEAGCNLRLLQQSLGHSKLETTEKYLHINPDEGSSQFIDI
SIO_010081: PCC7424_RS29005
subclass of: SO_0000673
so part of: PCC7424_RS29005
location: 14169..14990
location: region:14169-14990:1
so has part: feature:14169-14990:1:exon

WP_012599417.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:14169-14990:1:exon