Gloeothece citriformis PCC 7424 plasmid pP742404, complete sequence.
type: Entry
definition: Gloeothece citriformis PCC 7424 plasmid pP742404, complete sequence.
sequence version: NC_011732.1
sequence date: 2023-03-10
sequence: sequence
division: CON
label: NC_011732.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA224116
dblink: SAMN00000286
keyword: RefSeq
source: Gloeothece citriformis PCC 7424
organism: Gloeothece citriformis PCC 7424
taxonomy: Bacteria; Cyanobacteriota; Cyanophyceae; Oscillatoriophycideae; Chroococcales; Aphanothecaceae; Gloeothece; Gloeothece citriformis.
reference: 1
reference: 2
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCP001295.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4024136\nSource DNA and bacteria available from Himadri Pakrasi\n(pakrasi@biology2.wustl.edu)\nContacts: Himadri Pakrasi (pakrasi@biology2.wustl.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/10/2023 02:55:15\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 5,937\nCDSs (total) :: 5,878\nGenes (coding) :: 5,768\nCDSs (with protein) :: 5,768\nGenes (RNA) :: 59\nrRNAs :: 3, 3, 3 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 3, 3 (5S, 16S, 23S)\ntRNAs :: 46\nncRNAs :: 4\nPseudo Genes (total) :: 110\nCDSs (without protein) :: 110\nPseudo Genes (ambiguous residues) :: 0 of 110\nPseudo Genes (frameshifted) :: 30 of 110\nPseudo Genes (incomplete) :: 76 of 110\nPseudo Genes (internal stop) :…

sequence
subclass of: SO_0000155
sequence length: 22636
topology: circular
so has quality: SO_0000988
location: 1..22636
location: region:1-22636:1
RO_0002162: 65393

NC_011732
type: RefSeq
SIO_000068: refseq

PRJNA224116
type: BioProject
SIO_000068: bioproject

SAMN00000286
type: BioSample
SIO_000068: biosample

1
title: Complete sequence of plasmid4 of Cyanothece sp. PCC 7424
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikhailova, N.
author: Liberton, M.
author: Stoeckel, J.
author: Banerjee, A.
author: Singh, A.
author: Page, L.
author: Sato, H.
author: Zhao, L.
author: Sherman, L.
author: Pakrasi, H.
author: Richardson, P.
journal: Unpublished

2
title: Direct Submission
author: Lucas, S.
author: Copeland, A.
author: Lapidus, A.
author: Glavina del Rio, T.
author: Dalin, E.
author: Tice, H.
author: Bruce, D.
author: Goodwin, L.
author: Pitluck, S.
author: Chertkov, O.
author: Brettin, T.
author: Detter, J.C.
author: Han, C.
author: Larimer, F.
author: Land, M.
author: Hauser, L.
author: Kyrpides, N.
author: Mikhailova, N.
author: Liberton, M.
author: Stoeckel, J.
author: Banerjee, A.
author: Singh, A.
author: Page, L.
author: Sato, H.
author: Zhao, L.
author: Sherman, L.
author: Pakrasi, H.
author: Richardson, P.
journal: Submitted (11-DEC-2008) US DOE Joint Genome Institute, 2800 Mitchell Drive B100, Walnut Creek, CA 94598-1698, USA

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:22636:1
position: 22636
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-22636:1:source
so part of: sequence
organism: Gloeothece citriformis PCC 7424
mol type: genomic DNA
strain: PCC 7424
type material: reference strain of Gloeothece citriformis
plasmid: pP742404

65393
type: Taxonomy
SIO_000068: taxonomy

PCC7424_RS28760
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28760
old locus tag: PCC7424_5575
so part of: sequence
location: complement(280..2349)
location: region:280-2349:-1
so has part: feature:280-2349:-1:exon
subclass of: SO_0000010

position:280:-1
position: 280
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:2349:-1
position: 2349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:280-2349:-1:exon

PCC7424_RS28760
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28760
old locus tag: PCC7424_5575
inference: COORDINATES: protein motif:HMM:NF036725.2
GO function: GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIR domain-containing protein
translation: MTTEYCPYFRVYLLWHPKSDDGKQLAEYLFEKICGEPEHPLCRGLGIPVYFRSAPFTLGNDTPRPINFKNSLKSAIFVLIDEQMVISDSWEQYIEQLWHNTSKLVPHHRLYPVALTEYFSNFINEQDFLRTNFIKIYQETNIQAKCEKLLRQVLHECCRQLKPIESQEPPNSGTAPSSLRLFLSHAKQDGVDIANSVRRWINEDESLNTFFDAKDIAPGYDFVEEIKAGLKDSALLICQTDAYATRYWCRWEVLTAKKHQVPTLLVSALNVGEERSFPYLGNIPTMRWQGTENIPFIITRILLEVLRYRYFPAYVENLKQIDRMPKQATIVPCAPELLSYLQSWQPSKSEDNTLIIYPDPPLGDDEIELLNSLDPGLKAWTPSQPMPLVAEETAQKPLLHKLIGISISDSPDLARLGFSHFHLKRALVEISRHLLAQGASVAYGGDLRPDGFTQDLIEMVKAYNKQALELGEKIQNFLAWPLHLGQTVQFLAQHKNEITIRPIALPQELKQDFSIDEQKYLEPNSTVNQYIWSRCLTAMREQMAQQIDARIILGGKVVNYKGAFPGIAEEAALAISHHKPLFVLGAFGGCAKAVGEAMLGESPEVLTQAYQTAQSEDYAKMIQFYNQRANQGTSHKEINYTTLVETFQNTGFQGLNNGLTELENQNLFNTENLEEMVYLILKGLQTAEA
SIO_010081: PCC7424_RS28760
subclass of: SO_0000673
so part of: PCC7424_RS28760
location: complement(280..2349)
location: region:280-2349:-1
so has part: feature:280-2349:-1:exon

WP_157867689.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:280-2349:-1:exon

PCC7424_RS28765
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28765
old locus tag: PCC7424_5576
so part of: sequence
location: complement(2656..3372)
location: region:2656-3372:-1
so has part: feature:2656-3372:-1:exon
subclass of: SO_0000010

position:2656:-1
position: 2656
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:3372:-1
position: 3372
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:2656-3372:-1:exon

PCC7424_RS28765
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28765
old locus tag: PCC7424_5576
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015784913.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: chitin deacetylase family protein
translation: MELLELTLYLSGLGIGILLFFQPRWLLSIALLTTPGVVYFVETNEPVVALTLDDGPDSTTTPKILNLLLDYKVHATFFLISTRIFGNETIVTEIVRQGHELGNHLTDDKPSIRMSTLEFEAKLLEAQKILGKFAETHWLRPSSGFYNTKMLDIAYKYGYRIALGSIFPYDTHIPSSWFASKHILSNVSPGSIIILHDGGYRGERTVSTLKTILPKLSQRGYQVVTLSKLLTFQPKKSD
SIO_010081: PCC7424_RS28765
subclass of: SO_0000673
so part of: PCC7424_RS28765
location: complement(2656..3372)
location: region:2656-3372:-1
so has part: feature:2656-3372:-1:exon

WP_012599373.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:2656-3372:-1:exon

PCC7424_RS29575
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS29575
old locus tag: PCC7424_5577
so part of: sequence
location: complement(3443..4240)
location: region:3443-4240:-1
so has part: feature:3443-4240:-1:exon
subclass of: SO_0000010

position:3443:-1
position: 3443
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:4240:-1
position: 4240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:3443-4240:-1:exon

PCC7424_RS29575
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS29575
old locus tag: PCC7424_5577
inference: COORDINATES: protein motif:HMM:NF025056.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: toll/interleukin-1 receptor domain-containing protein
translation: MIDSYEFDVFLAYNSVDKPLVKAIAKYLKSKGLRLWFDEEQIKPGDPIADRVIEGIFQSPVALLFIGTSGFGKFQRLWELNTLIMLCCQENIRIIPILLPGVDLNSRQLGLFYGIECLQFHQSVDETEKLEKLVQAIRGDQRLTSNVCIIDEGLGSFVVNIMGRLIEGGDIRSQNTPIGEPTKEAIKELENITGMTICNANLVRYATFNFKLKDGTEVKTWTRPLLGGDHIFLSAPDGRVIFCGFVWLKSYNLKQAIENIKTNCT
SIO_010081: PCC7424_RS29575
subclass of: SO_0000673
so part of: PCC7424_RS29575
location: complement(3443..4240)
location: region:3443-4240:-1
so has part: feature:3443-4240:-1:exon

WP_012599374.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:3443-4240:-1:exon

PCC7424_RS31115
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS31115
so part of: sequence
location: complement(5219..5419)
location: region:5219-5419:-1
so has part: feature:5219-5419:-1:exon
subclass of: SO_0000010

position:5219:-1
position: 5219
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:5419:-1
position: 5419
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:5219-5419:-1:exon

PCC7424_RS31115
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS31115
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MHDYLKNPAPGRGCREQTLIRQTANGQPLNISELGEATASVGQKTTDEVESLIDTLPKKSKEVHYI
SIO_010081: PCC7424_RS31115
subclass of: SO_0000673
so part of: PCC7424_RS31115
location: complement(5219..5419)
location: region:5219-5419:-1
so has part: feature:5219-5419:-1:exon

WP_157867690.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:5219-5419:-1:exon

PCC7424_RS28775
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28775
old locus tag: PCC7424_5579
so part of: sequence
location: 6122..6559
location: region:6122-6559:1
so has part: feature:6122-6559:1:exon
subclass of: SO_0000010

position:6122:1
position: 6122
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6559:1
position: 6559
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6122-6559:1:exon

PCC7424_RS28775
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28775
old locus tag: PCC7424_5579
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNSQKKPREKLELLFQPYESSLDYDLVRFIKHHSYYSSKEIALSALKAFWLPLAARSSNRYNPSEILEITLHSLYILKKQLDFLSIEMNCCLGEPIGLTTEHQPPKKSVGQLNTDSSKISENLDEDEIWDFSNSGTEYSQQGLW
SIO_010081: PCC7424_RS28775
subclass of: SO_0000673
so part of: PCC7424_RS28775
location: 6122..6559
location: region:6122-6559:1
so has part: feature:6122-6559:1:exon

WP_012599375.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6122-6559:1:exon

PCC7424_RS31205
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS31205
old locus tag: PCC7424_5580
so part of: sequence
location: complement(6846..7070)
location: region:6846-7070:-1
so has part: feature:6846-7070:-1:exon
subclass of: SO_0000010

position:6846:-1
position: 6846
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:7070:-1
position: 7070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:6846-7070:-1:exon

PCC7424_RS31205
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS31205
old locus tag: PCC7424_5580
inference: COORDINATES: similar to AA sequence:RefSeq:WP_017716917.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSNQGRVMNPRSLKNLRPNIPQIHDEPKTARINTALTPTGKQGVLKLAEQYNLSLSELIEQIGRGEFELVRKVS
SIO_010081: PCC7424_RS31205
subclass of: SO_0000673
so part of: PCC7424_RS31205
location: complement(6846..7070)
location: region:6846-7070:-1
so has part: feature:6846-7070:-1:exon

WP_012599376.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:6846-7070:-1:exon

PCC7424_RS28790
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28790
old locus tag: PCC7424_5581
so part of: sequence
location: 7549..10551
location: region:7549-10551:1
so has part: feature:7549-10551:1:exon
subclass of: SO_0000010

position:7549:1
position: 7549
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10551:1
position: 10551
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:7549-10551:1:exon

PCC7424_RS28790
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28790
old locus tag: PCC7424_5581
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013335025.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: DUF5906 domain-containing protein
translation: MVAATIHSTWSEVKKSNPCPLCGKTKWCSVSDNGEGVLCRHTDPGLQPPDWKHIKNSVDGYPIYVLDKGREFFNPNRKFIRKPKKTKASSPPNLPVEIYFEEISLAIIPEKPTDCPVTNLKPSIPDWLIKKGIPQNATETRYYYSKTQWVSRFEWVDPNKPSGYDKTIRPVHIQPDGTTLWTKGDGSWNPYKLNEAIAYGKGKWVLGVEGEPCVETARSLKLAAITWQGGSWTEKEIRSALNKLKASGITGLIYWPDNDSTGGKKAQLILDTASSLQFPVLILNPLDIWEEMPDKGDIADWVESLEWGEGKGMNSPEFIKRLELAIHRAVENRQNQPSSSDDNSFSPQTTPPKQNRIAAEVAEQYANKFRYNNECNTWMEYQEEASSFGSWIPVSNLHIQTQIYNILQARDYEFNSSYLNGIEELLRKALYIKEWPKAPNLLPFSDCVLELSTGKTREHSPNNWLTWVLPRPYNSLEKSWIKIDNWLTEATLGNATHKQILLCYAAAVLRRRADLQKFLHLIGTGGSGKSTFMNLLVALVGQQNTISLDFNSLNEKDAVAEAFGKVLAIFPDQDSAGKNISNFKKITGQDLLRGRRLYKDGFNFRFEGLCAVSSNHPIFHSGSGRWLTRRVLMVPFELAVPDGKVRNLEKEFEPELSAFTSYLLSIPESEIEATLKGLNKKQVVSSTLWSSQIRSDGLASWVNDEIIFDSTARTQIGSNAKEWGEDDYDAASSTLFGSYCRHIRRSGRQPLTKDNFSANLIELLKGTLKRDVEKIKTNQGRFLTGVRLRTALDFNIPMLDEFLEKIESDDPGDDPGDDPGDDLKALPGKESDDRDDLTTNLEAKENLLIETEENDPQKIDIESPPPNPPSRRTNNKSDVESEVVTVVTNQSEQGVEVATLAVTEVVTGVVTQSEPVSLDNNGDTTSTVIKANHKRDGNSSSETDTQVNYNAPSIDWVRYRGEVYTVSYTNGEQLFLRKSGSPKIVHKVHLSSVEIGGYKS
SIO_010081: PCC7424_RS28790
subclass of: SO_0000673
so part of: PCC7424_RS28790
location: 7549..10551
location: region:7549-10551:1
so has part: feature:7549-10551:1:exon

WP_012599377.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:7549-10551:1:exon

PCC7424_RS28795
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28795
old locus tag: PCC7424_5582
so part of: sequence
location: 10861..11802
location: region:10861-11802:1
so has part: feature:10861-11802:1:exon
subclass of: SO_0000010

position:10861:1
position: 10861
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:11802:1
position: 11802
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:10861-11802:1:exon

PCC7424_RS28795
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28795
old locus tag: PCC7424_5582
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015210504.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: site-specific integrase
translation: MSKRVEKNDLKLSSPVPLSIHPAAVYLSSISPGSVATMRSSLNVIASLLTEGECDAMTLNWARLRYQHTAAIRAIFKERYCATTANKMLCALKRVLAEAVRLDLMEATDYAKAVDFPKIKGKKKLRGRALSGDEISALIEVCRQDESPLGVRDAAIIAILRGTGLRRAELAALELRDFIADGGVLEVREGKGDKDRTVYLPHNVISYVNDWIAVRGDAPGALLCPIRKGGRIEGRHLHPDAVLKIVKKRATQAGVESFSPHDFRRTFCSDLLDAGVDIVTVQKLAGHASPETTAKYDRRGEETKRKAVQMLSI
SIO_010081: PCC7424_RS28795
subclass of: SO_0000673
so part of: PCC7424_RS28795
location: 10861..11802
location: region:10861-11802:1
so has part: feature:10861-11802:1:exon

WP_012599378.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:10861-11802:1:exon

PCC7424_RS28800
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28800
old locus tag: PCC7424_5583
so part of: sequence
location: 11844..12335
location: region:11844-12335:1
so has part: feature:11844-12335:1:exon
subclass of: SO_0000010

position:11844:1
position: 11844
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12335:1
position: 12335
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:11844-12335:1:exon

PCC7424_RS28800
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28800
old locus tag: PCC7424_5583
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013334795.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: papain-like cysteine protease family protein
translation: MHPAWAGAGGNWPAIDEVFDPRVVQQQDKLACGAACGEMLLRDCGINITQGAIIDQTGVPITAALLAEVMNSFEPGNKRSWAGGLLEIPGATRADVMEVLNTTGSWIAMLWETGAKIGHMVIVDGVDLLEYVLIRDPWQGTRYKLRKEDFLQYWSDYGVYRRR
SIO_010081: PCC7424_RS28800
subclass of: SO_0000673
so part of: PCC7424_RS28800
location: 11844..12335
location: region:11844-12335:1
so has part: feature:11844-12335:1:exon

WP_012599379.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:11844-12335:1:exon

PCC7424_RS28805
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28805
old locus tag: PCC7424_5584
so part of: sequence
location: 12332..12658
location: region:12332-12658:1
so has part: feature:12332-12658:1:exon
subclass of: SO_0000010

position:12332:1
position: 12332
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12658:1
position: 12658
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:12332-12658:1:exon

PCC7424_RS28805
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28805
old locus tag: PCC7424_5584
inference: COORDINATES: ab initio prediction:GeneMarkS-2+
note: Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MKVQVKEIVPSQTPWHSQFDPNQEIGTFDVKVEIGNFQHQFKLAVDIDLIGERQIQIVRTDDEFEEIFKFDLQFHRDICKLVSSVYNHQPVQLPTNLGELEKAESLIG
SIO_010081: PCC7424_RS28805
subclass of: SO_0000673
so part of: PCC7424_RS28805
location: 12332..12658
location: region:12332-12658:1
so has part: feature:12332-12658:1:exon

WP_012599380.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:12332-12658:1:exon

PCC7424_RS28810
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28810
old locus tag: PCC7424_5586
so part of: sequence
location: complement(13282..14796)
location: region:13282-14796:-1
so has part: feature:13282-14796:-1:exon
subclass of: SO_0000010

position:13282:-1
position: 13282
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:14796:-1
position: 14796
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:13282-14796:-1:exon

PCC7424_RS28810
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28810
old locus tag: PCC7424_5586
inference: COORDINATES: similar to AA sequence:RefSeq:WP_010493166.1
GO function: GO:0005515 - protein binding [Evidence IEA]
GO process: GO:0007165 - signal transduction [Evidence IEA]
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIR domain-containing protein
translation: MKPYLEDVYKLSGLPTYTFVKPVEYQKLLVSLRTPGRGLVIEGPSGIGKTTSVSNAIVELGLKTKTVKLSARKNDDRALITELPEMGKIGLVIIDDFHRLDEATKQIIADLMKTLADEEDEKSKLVLVGINKAGNSLIEFAKDLTNRMDIIRFESNPEERILELIHKGEQALRININIKEEIAQNVHGSFHLAQLLCHHTCLDSQVTEKSEVEKTLTVSFEVVKERVLEELSRTFLGIARKFATGPRLRREGRAPYLQILHWLSESNDWSLNLEQALSLHPDHKASVGQVVEKNLLANFLAKNEEMFAEVLHYDSNTRILSVEDPKFVYFLKNILWSKFAQQVGFLSTYFKCCYDFALSFAGPERDIAEAIANKLSDAEIAVFYDKNEQHRILAENVEEYLAPIYRTEAQFVIVLLGQEYPKRIWTKFESEQFKSRFGQSSIIPIWFSDAPPNWFDETSRVGGLEYNKNKDKDSQIDYIVDILLKKLAEARGLNEHGKQLSLEF
SIO_010081: PCC7424_RS28810
subclass of: SO_0000673
so part of: PCC7424_RS28810
location: complement(13282..14796)
location: region:13282-14796:-1
so has part: feature:13282-14796:-1:exon

WP_012599382.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:13282-14796:-1:exon

PCC7424_RS28815
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28815
old locus tag: PCC7424_5587
so part of: sequence
location: 15287..15937
location: region:15287-15937:1
so has part: feature:15287-15937:1:exon
subclass of: SO_0000010

position:15287:1
position: 15287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:15937:1
position: 15937
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:15287-15937:1:exon

PCC7424_RS28815
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28815
old locus tag: PCC7424_5587
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015142533.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MTEVDQIPLSTLPSRYDIARSALYTRLKDLKIEPIKQGKKAYVNSEHLQLLDELHEHISKGGTTNEFLKQRANFSTGLSRTNERTKTKSELVIDSTGQITIQPSGTLSVVEAIVNRLLPATGNRLAYLRELEEAYEKGWLLSTSEVADLLGLSPKTVREYGKKFTDAGFVFTRAGTRKGGEIAWTIDKQDDIGIQPQQPKIGIKEALSKEFDPELQ
SIO_010081: PCC7424_RS28815
subclass of: SO_0000673
so part of: PCC7424_RS28815
location: 15287..15937
location: region:15287-15937:1
so has part: feature:15287-15937:1:exon

WP_012599383.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:15287-15937:1:exon

PCC7424_RS32180
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS32180
old locus tag: PCC7424_5588
pseudo: true
so part of: sequence
location: 16396..>16572
location: region:16396-16572:1
so has part: feature:16396-16572:1:exon
subclass of: SO_0000010

position:16396:1
position: 16396
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16572:1
position: 16572
reference: sequence
type: ForwardStrandPosition
type: FuzzyPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16396-16572:1:exon

PCC7424_RS32180
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS32180
old locus tag: PCC7424_5588
inference: COORDINATES: similar to AA sequence:RefSeq:WP_013335080.1
note: incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
pseudo: true
codon start: 1
transl table: 11
product: ISNCY family transposase
SIO_010081: PCC7424_RS32180
subclass of: SO_0000673
so part of: PCC7424_RS32180
location: 16396..>16572
location: region:16396-16572:1
so has part: feature:16396-16572:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:16396-16572:1:exon

PCC7424_RS28825
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28825
old locus tag: PCC7424_5589
so part of: sequence
location: complement(16640..17071)
location: region:16640-17071:-1
so has part: feature:16640-17071:-1:exon
subclass of: SO_0000010

position:16640:-1
position: 16640
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:17071:-1
position: 17071
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:16640-17071:-1:exon

PCC7424_RS28825
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28825
old locus tag: PCC7424_5589
inference: COORDINATES: protein motif:HMM:NF012321.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: VWA domain-containing protein
translation: MKKEQIKLDIFTERPIVRNDTTSELDVVIEIRSNQSIDELDTKKALNLCLVIDRSGSMSGEKLETAKKSCIDIFKQLGEKDLLTVVVFDDEAEVIVNPQVPKAEVIKKINQINDRGSTNLSLGWYLGLLELQTYMTQYNLPYQ
SIO_010081: PCC7424_RS28825
subclass of: SO_0000673
so part of: PCC7424_RS28825
location: complement(16640..17071)
location: region:16640-17071:-1
so has part: feature:16640-17071:-1:exon

WP_012599385.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:16640-17071:-1:exon

PCC7424_RS28830
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28830
old locus tag: PCC7424_5590
so part of: sequence
location: complement(17977..18609)
location: region:17977-18609:-1
so has part: feature:17977-18609:-1:exon
subclass of: SO_0000010

position:17977:-1
position: 17977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:18609:-1
position: 18609
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:17977-18609:-1:exon

PCC7424_RS28830
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28830
old locus tag: PCC7424_5590
inference: COORDINATES: protein motif:HMM:NF037410.2
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: hypothetical protein
translation: MSKIYIYVVDRDYGFAPNPFHGYCTLATCKPRIRHKAEVKDWVIGVGGSRLKATARCIYAMCITEKITFNEYWSNPKYFDKKPVRNGSRKMMVGDNIYHYDTVQNKWYQADSHHSNDDGSVNLQNLTTDTKSNNVLISRHFFYFGKDAPLIPINLLDVIGYKKNQRNYRVFQDQIASGLIDWLYNSFGRSLNQVIGDPFDFNNSEKRYSP
SIO_010081: PCC7424_RS28830
subclass of: SO_0000673
so part of: PCC7424_RS28830
location: complement(17977..18609)
location: region:17977-18609:-1
so has part: feature:17977-18609:-1:exon

WP_012599386.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:17977-18609:-1:exon

PCC7424_RS28835
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28835
old locus tag: PCC7424_5591
so part of: sequence
location: complement(18613..19110)
location: region:18613-19110:-1
so has part: feature:18613-19110:-1:exon
subclass of: SO_0000010

position:18613:-1
position: 18613
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:19110:-1
position: 19110
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:18613-19110:-1:exon

PCC7424_RS28835
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28835
old locus tag: PCC7424_5591
inference: COORDINATES: similar to AA sequence:RefSeq:WP_002911710.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: TIR domain-containing protein
translation: MDSESKRRHIFISHHHADDAEVDKLVSLLSRSGYDIRNSSIRAKPANQRRLEQGLVKDETIRRLLRMKISWAGTVVVLIGKDTHSRPWVNWEIEQANKQGKRIVGVYIRGGTEADKPPALEKYASAICGWDTNCIMAAIDGTANSFQNPDGSPRQAAHTRTSLTC
SIO_010081: PCC7424_RS28835
subclass of: SO_0000673
so part of: PCC7424_RS28835
location: complement(18613..19110)
location: region:18613-19110:-1
so has part: feature:18613-19110:-1:exon

WP_012599387.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:18613-19110:-1:exon

PCC7424_RS28840
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28840
old locus tag: PCC7424_5592
so part of: sequence
location: complement(19412..20302)
location: region:19412-20302:-1
so has part: feature:19412-20302:-1:exon
subclass of: SO_0000010

position:19412:-1
position: 19412
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:20302:-1
position: 20302
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:19412-20302:-1:exon

PCC7424_RS28840
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28840
old locus tag: PCC7424_5592
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015147440.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: nucleoside triphosphate pyrophosphohydrolase family protein
translation: MDFRTYQEQALTTDQIPSIEGTDKIVPLLGLAGEAGELLSEYKKHLRDGNAHKLFKERIAEELGDLLWYIANVASKFELDLEEIAKDNLKKCQERWSWRDTEQHSVKKSGYLFDCKFPENERLPRKFEVQITQENQNNSVRMKAFINGKQIGNYLTDNSYSNDGYRFHDIFHLSYAAILGWSPVIRSNLNCKRKSDLLVDEVEDGGRAIAIEEGISALVFSYAKDHSFLDGILTVDYQLLKTIKNITSHLEVARCSLGDWEQAILTGYEIWRQVKENQGGKVIVNLDERSLLLAGR
SIO_010081: PCC7424_RS28840
subclass of: SO_0000673
so part of: PCC7424_RS28840
location: complement(19412..20302)
location: region:19412-20302:-1
so has part: feature:19412-20302:-1:exon

WP_012599388.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:19412-20302:-1:exon

PCC7424_RS28845
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28845
old locus tag: PCC7424_5593
so part of: sequence
location: complement(20462..21544)
location: region:20462-21544:-1
so has part: feature:20462-21544:-1:exon
subclass of: SO_0000010

position:20462:-1
position: 20462
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:21544:-1
position: 21544
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:20462-21544:-1:exon

PCC7424_RS28845
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28845
old locus tag: PCC7424_5593
inference: COORDINATES: similar to AA sequence:RefSeq:WP_015186117.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: putative DNA base hypermodification protein
translation: MANKHPSSANEQLSLDFGEYGNSPKPSPEFISHISPAKPTIVFDSYWRFAAERQNIFFKRFRGEPFPWTNDPILSRYKFTNAYRASDRTSQYLIRHVIYRNDLPSTPDEVFFRIMLFKLFNKIETWQLLESQINNIIFAQYSFEQYDQILTEAMSKGQAIYSAAYIMPSGGRVLGYTTKHRNHLKLLERMMSDELPKKLQDAKSMHQGFNLLRAYPTIGDFLAYQFITDINYSEITNWTEMEFVVPGPGALDGICKCFRDLGGLNEPELIKFMAESQEQEFERLGLNFQSLWGRKLQLIDCQNLFCEVDKYARVKHPDISGKSGRTRIKQKYSLTKSPINYWYPPKWGINQAIQEDKPFD
SIO_010081: PCC7424_RS28845
subclass of: SO_0000673
so part of: PCC7424_RS28845
location: complement(20462..21544)
location: region:20462-21544:-1
so has part: feature:20462-21544:-1:exon

WP_012599389.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:20462-21544:-1:exon

PCC7424_RS28850
type: Gene
subclass of: SO_0000704
RO_0002162: 65393
locus tag: PCC7424_RS28850
old locus tag: PCC7424_5594
so part of: sequence
location: complement(21534..22523)
location: region:21534-22523:-1
so has part: feature:21534-22523:-1:exon
subclass of: SO_0000010

position:21534:-1
position: 21534
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:22523:-1
position: 22523
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:21534-22523:-1:exon

PCC7424_RS28850
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 65393
locus tag: PCC7424_RS28850
old locus tag: PCC7424_5594
inference: COORDINATES: similar to AA sequence:RefSeq:WP_006527990.1
note: Derived by automated computational analysis using gene prediction method: Protein Homology.
codon start: 1
transl table: 11
product: CBASS cGAMP-activated phospholipase
translation: MEQSKRSFRILSLEGGGIMGAFSASVLATLEEETNCRCVEHFDLIAGTSTGGIIAIGLGLGLPASEIREFYKNNGSQIFRNTGFTRRVFNSVRHLFQPKHSQENLRQALHGAFQDRKFGESKCRLVIPTYDAIGGRIFIMKTAHHERLKFDIEALAVDVALATSAAPTYFSAAPFPIHQGASYIDGGVWANCPALVGLVEAIHFLNVPPESIDILNIGTISSPFSVSQNAQSGIFGWGKGLINIFMNAQVESSRAMSSLLTNDGFFNINYSAEEGRFSLDDSSKINELISLGRGEAVKMKNFEQVKQRFLNNQRVKPFIPIQRLEENGQ
SIO_010081: PCC7424_RS28850
subclass of: SO_0000673
so part of: PCC7424_RS28850
location: complement(21534..22523)
location: region:21534-22523:-1
so has part: feature:21534-22523:-1:exon

WP_012599390.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:21534-22523:-1:exon