Aeromonas media strain TR3_1 plasmid p1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.
The superbug in activated sludge of wastewater treatment plant increases the risk of antibiotic resistance genes spread in the water cycle
Submitted (17-MAY-2021) Department of Environmental Science and Engineering; Research Center of Environmental Pollution Control Technology; Center of Analysis and Measurement, Fudan University and Chinese Research Academy of Environmental Sciences, 220 Handan Road, Shanghai 200438, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP075565.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: unicycler v. v0.4.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 400.0x\nSequencing Technology :: PacBio Sequel\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 10/27/2022 04:07:57\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.3\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA;\n repeat_region\nGenes (total) :: 4,198\nCDSs (total) :: 4,034\nGenes (coding) :: 3,967\nCDSs (with protein) :: 3,967\nGenes (RNA) :: 164\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 127\nncRNAs :: 6\nPseudo Genes (total) :: 68\nCDSs (without protein) :: 67\nPseudo Genes (ambiguous residues) :: 0 of 68\nPseudo Genes (frameshifted) :: 22 of 68\nPseudo Genes (incomplete) :: 46 of 68\nPseudo Genes (internal stop) :: 13 of 68\nPseudo Genes (multiple problems) :: 11 of 68\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
sludge of the aeration tanks of urban wastewater treatment plants
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_005671594.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005321398.1
COORDINATES: similar to AA sequence:RefSeq:WP_005321767.1
COORDINATES: similar to AA sequence:RefSeq:WP_001686642.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_001064713.1
BsuBI/PstI family type II restriction endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_004356308.1
COORDINATES: similar to AA sequence:RefSeq:WP_001516695.1
quinolone resistance pentapeptide repeat protein QnrS2