Truepera radiovictrix DSM 17093, complete sequence.
Bacteria; Deinococcota; Deinococci; Trueperales; Trueperaceae; Truepera.
Complete genome sequence of Truepera radiovictrix type strain (RQ-24)
Submitted (21-MAY-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002049.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4085721\nSource DNA and organism available from Hans-Peter Klenk at the\nGerman Collection of Microorganisms and Cell Cultures (DSMZ)\n(hans-peter.klenk@dsmz.de)\nContacts: Jonathan A. Eisen (jaeisen@ucdavis.edu)\n David Bruce (microbe@cuba.jgi-psf.org)\nWhole genome sequencing and draft assembly at JGI-PGF\nFinishing done by JGI-LANL\nAnnotation by JGI-ORNL and JGI-PGF\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. It is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 05/02/2023 01:25:33\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.5\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 3,044\nCDSs (total) :: 2,990\nGenes (coding) :: 2,973\nCDSs (with protein) :: 2,973\nGenes (RNA) :: 54\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 45\nncRNAs :: 3\nPseudo Genes (total) :: 17\nCDSs (without protein) :: 17\nPseudo Genes (ambiguous residues) :: 0 of 17\nPseudo Genes (frameshifted) :: 7 of 17\nPseudo Genes (incomplete) :: 9 of 17\nPseudo Genes (internal stop) :: 3 of 17\nPseudo Genes (multiple problems) :: 2 of 17\nCRISPR Arrays :: 9\n##Genome-Annotation-Data-END##\n\n##Metadata-START##\nOrganism Display Name :: Truepera radiovictrix RQ-24, DSM 17093\nCulture Collection ID :: DSM 17093, CIP 108686, LMG 22925\nGOLD Stamp ID :: Gi02949\nGreengenes ID :: 131852\nFunding Program :: DOE-GEBA 2009\nIsolation Site :: \"Water sample from a hot spring runoffs on\n the Island of Sco Miguel in the Azores,\n Portugal\"\nIsolation Country :: Portugal\nLatitude :: 37.946797\nLongitude :: -25.490113\nOxygen Requirement :: Aerobe\nCell Shape :: Sphere-shaped\nTemperature Range :: Thermophile\nTemperature Optimum :: 50C\npH :: 7.5 - 7.9\nBiotic Relationship :: Free living\nDiseases :: None\nHabitat :: Fresh water, Hot spring\nPhenotypes :: Radiation resistant\nEnergy Source :: Chemoorganotroph\n##Metadata-END##\nCOMPLETENESS: full length.
COORDINATES: protein motif:HMM:TIGR00362.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]
GO:0006270 - DNA replication initiation [Evidence IEA]; GO:0006275 - regulation of DNA replication [Evidence IEA]
Derived by automated computational analysis using gene prediction method: Protein Homology.
chromosomal replication initiator protein DnaA
COORDINATES: protein motif:HMM:TIGR00663.1
GO:0009360 - DNA polymerase III complex [Evidence IEA]
GO:0003887 - DNA-directed DNA polymerase activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002985288.1
GO:0004634 - phosphopyruvate hydratase activity [Evidence IEA]
GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004886.0
GO:0004743 - pyruvate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00158.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000311 - plastid large ribosomal subunit [Evidence IEA]
GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292916.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000314 - organellar small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00621.2
GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0006351 - DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00166.1
COORDINATES: protein motif:HMM:NF020893.2
COORDINATES: protein motif:HMM:NF015735.2
COORDINATES: protein motif:HMM:NF001413.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF013212.2
GO:0000774 - adenyl-nucleotide exchange factor activity [Evidence IEA]; GO:0051087 - chaperone binding [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013705.2
DnaJ C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF025010.2
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004231.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0004733 - pyridoxamine-phosphate oxidase activity [Evidence IEA]
GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF015168.2
COORDINATES: protein motif:HMM:NF012789.2
COORDINATES: similar to AA sequence:RefSeq:WP_004415194.1
Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
COORDINATES: similar to AA sequence:RefSeq:WP_000271409.1
COORDINATES: similar to AA sequence:RefSeq:WP_009598768.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0000315 - organellar large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF008955.0
GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013621.2
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009435 - NAD biosynthetic process [Evidence IEA]
nicotinate-nucleotide adenylyltransferase
COORDINATES: protein motif:HMM:TIGR00488.1
bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK
COORDINATES: protein motif:HMM:TIGR00350.1
GO:0070726 - cell wall assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00090.1
GO:0043022 - ribosome binding [Evidence IEA]
GO:0017148 - negative regulation of translation [Evidence IEA]
COORDINATES: protein motif:HMM:NF009150.0
GO:0004518 - nuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012900.2
COORDINATES: protein motif:HMM:NF013225.2
GO:0016874 - ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017015.2
COORDINATES: protein motif:HMM:NF024909.2
COORDINATES: protein motif:HMM:NF013999.2
COORDINATES: protein motif:HMM:NF014629.2
23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH
COORDINATES: protein motif:HMM:TIGR02170.1
GO:0050797 - thymidylate synthase (FAD) activity [Evidence IEA]
GO:0009265 - 2'-deoxyribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012613.2
S-layer homology domain-containing protein
COORDINATES: protein motif:HMM:NF012360.2
transferase hexapeptide repeat containing protein
COORDINATES: protein motif:HMM:NF013827.2
GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
rhomboid family intramembrane serine protease
COORDINATES: protein motif:HMM:TIGR00741.1
GO:0022626 - cytosolic ribosome [Evidence IEA]; GO:0005840 - ribosome [Evidence IEA]
GO:0045182 - translation regulator activity [Evidence IEA]
GO:0009386 - translational attenuation [Evidence IEA]
ribosome-associated translation inhibitor RaiA
COORDINATES: similar to AA sequence:RefSeq:WP_013178634.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
metalloregulator ArsR/SmtB family transcription factor
COORDINATES: protein motif:HMM:NF013695.2
GO:0008324 - monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF033551.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01215.1
GO:0000910 - cytokinesis [Evidence IEA]; GO:0000918 - division septum site selection [Evidence IEA]
cell division topological specificity factor MinE
COORDINATES: protein motif:HMM:TIGR01968.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]
GO:0000918 - division septum site selection [Evidence IEA]
COORDINATES: protein motif:HMM:NF024754.2
COORDINATES: protein motif:HMM:NF021503.2
COORDINATES: protein motif:HMM:NF024808.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0019808 - polyamine binding [Evidence IEA]
GO:0015846 - polyamine transport [Evidence IEA]
spermidine/putrescine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR01187.1
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02123.1
COORDINATES: protein motif:HMM:NF020479.2
COORDINATES: protein motif:HMM:TIGR02122.1
TAXI family TRAP transporter solute-binding subunit
COORDINATES: protein motif:HMM:NF014564.2
GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012656.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:NF040521.1
COORDINATES: protein motif:HMM:NF012792.2
GO:0008080 - N-acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013434.2
GO:0071949 - FAD binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005603.0
delta(1)-pyrroline-2-carboxylate reductase family protein
COORDINATES: protein motif:HMM:TIGR00120.1
GO:0004358 - glutamate N-acetyltransferase activity [Evidence IEA]
GO:0006526 - arginine biosynthetic process [Evidence IEA]
bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ
COORDINATES: protein motif:HMM:TIGR01850.1
GO:0003942 - N-acetyl-gamma-glutamyl-phosphate reductase activity [Evidence IEA]
GO:0006592 - ornithine biosynthetic process [Evidence IEA]
N-acetyl-gamma-glutamyl-phosphate reductase
COORDINATES: protein motif:HMM:NF001986.0
GO:0004585 - ornithine carbamoyltransferase activity [Evidence IEA]
GO:0042450 - arginine biosynthetic process via ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:NF013632.2
GO:0004190 - aspartic-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018460.2
COORDINATES: protein motif:HMM:NF015871.2
COORDINATES: protein motif:HMM:TIGR00088.1
GO:0052906 - tRNA (guanine(37)-N(1))-methyltransferase activity [Evidence IEA]
GO:0008033 - tRNA processing [Evidence IEA]
tRNA (guanosine(37)-N1)-methyltransferase TrmD
COORDINATES: protein motif:HMM:TIGR02273.1
GO:0006364 - rRNA processing [Evidence IEA]
Essential for efficient processing of 16S rRNA; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024483.2
COORDINATES: similar to AA sequence:RefSeq:WP_003056242.1
COORDINATES: similar to AA sequence:RefSeq:WP_016290939.1
GO:0048501 - signal recognition particle, plasma membrane targeting [Evidence IEA]
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005048 - signal sequence binding [Evidence IEA]
GO:0009306 - protein secretion [Evidence IEA]
COORDINATES: protein motif:HMM:NF024824.2
COORDINATES: protein motif:HMM:NF022112.2
COORDINATES: protein motif:HMM:NF002049.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003937 - IMP cyclohydrolase activity [Evidence IEA]; GO:0004643 - phosphoribosylaminoimidazolecarboxamide formyltransferase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase
COORDINATES: protein motif:HMM:NF014868.2
intein-containing adenosylcobalamin-dependent ribonucleoside-diphosphate reductase
COORDINATES: nucleotide motif:Rfam:14.4:RF00177
Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.4:RF02541
COORDINATES: nucleotide motif:Rfam:14.4:RF00001
COORDINATES: protein motif:HMM:NF012311.2
COORDINATES: protein motif:HMM:NF025006.2
carboxypeptidase-like regulatory domain-containing protein
COORDINATES: protein motif:HMM:NF003763.0
GO:0008792 - arginine decarboxylase activity [Evidence IEA]
GO:0006527 - arginine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013694.2
GO:0015087 - cobalt ion transmembrane transporter activity [Evidence IEA]; GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0006824 - cobalt ion transport [Evidence IEA]; GO:0015693 - magnesium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014862.2
Clp protease N-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR00735.1
GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
GO:0000105 - histidine biosynthetic process [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisF
COORDINATES: protein motif:HMM:NF014505.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004521 - endoribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: protein motif:HMM:NF013237.2
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF014027.2
GO:0008612 - peptidyl-lysine modification to peptidyl-hypusine [Evidence IEA]
COORDINATES: protein motif:HMM:NF040111.1
COORDINATES: similar to AA sequence:RefSeq:WP_076611515.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF025636.2
TetR/AcrR family transcriptional regulator
COORDINATES: protein motif:HMM:NF012296.2
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0004497 - monooxygenase activity [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF024937.2
COORDINATES: protein motif:HMM:NF013430.2
COORDINATES: protein motif:HMM:NF024179.2
COORDINATES: protein motif:HMM:NF014307.2
NAD(P)(+) transhydrogenase (Re/Si-specific) subunit beta
COORDINATES: protein motif:HMM:NF013618.2
lytic transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF016843.2
COORDINATES: protein motif:HMM:NF012514.2
GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014740.2
GO:0000271 - polysaccharide biosynthetic process [Evidence IEA]
nucleoside-diphosphate sugar epimerase/dehydratase
COORDINATES: protein motif:HMM:NF014453.2
GO:0006486 - protein glycosylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF009404.0
COORDINATES: protein motif:HMM:NF025755.2
sugar-transfer associated ATP-grasp domain-containing protein
COORDINATES: protein motif:HMM:NF014542.2
COORDINATES: protein motif:HMM:NF012490.2
GO:0005971 - ribonucleoside-diphosphate reductase complex [Evidence IEA]
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
GO:0009263 - deoxyribonucleotide biosynthetic process [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
ribonucleotide-diphosphate reductase subunit beta
COORDINATES: protein motif:HMM:TIGR02510.1
GO:0004748 - ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor [Evidence IEA]
ribonucleoside-diphosphate reductase subunit alpha
COORDINATES: protein motif:HMM:NF015048.2
GO:0047617 - acyl-CoA hydrolase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00174
cobalamin riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013648.2
ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013219.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
GO:0006826 - iron ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF010068.0
heme ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF015925.2
COORDINATES: protein motif:HMM:NF014841.2
COORDINATES: protein motif:HMM:NF018154.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014442.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0008170 - N-methyltransferase activity [Evidence IEA]
GO:0006306 - DNA methylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012398.2
NAD-dependent succinate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:TIGR00700.1
GO:0003867 - 4-aminobutyrate transaminase activity [Evidence IEA]
GO:0009450 - gamma-aminobutyric acid catabolic process [Evidence IEA]
4-aminobutyrate--2-oxoglutarate transaminase
COORDINATES: protein motif:HMM:NF013739.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012738.2
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015366.2
tripartite tricarboxylate transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF018979.2
GO:0005215 - transporter activity [Evidence IEA]
tripartite tricarboxylate transporter TctB family protein
COORDINATES: protein motif:HMM:NF014073.2
tripartite tricarboxylate transporter permease
COORDINATES: protein motif:HMM:NF039905.1
diacylglycerol kinase family lipid kinase
COORDINATES: protein motif:HMM:NF000586.1
GO:0004372 - glycine hydroxymethyltransferase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0070905 - serine binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0019264 - glycine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF012356.2
GO:0003824 - catalytic activity [Evidence IEA]
GO:0005975 - carbohydrate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013176765.1
GO:0015079 - potassium ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01048.1
GO:0008836 - diaminopimelate decarboxylase activity [Evidence IEA]
GO:0009089 - lysine biosynthetic process via diaminopimelate [Evidence IEA]
COORDINATES: protein motif:HMM:NF019604.2
GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015331.2
COORDINATES: protein motif:HMM:TIGR00580.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003690 - double-stranded DNA binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024811.2
COORDINATES: protein motif:HMM:TIGR00096.1
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0000451 - rRNA 2'-O-methylation [Evidence IEA]
16S rRNA (cytidine(1402)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF024950.2
COORDINATES: protein motif:HMM:NF013335.2
COORDINATES: protein motif:HMM:NF006757.0
GO:0003994 - aconitate hydratase activity [Evidence IEA]
GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_005064559.1
GO:0015036 - disulfide oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014081.2
COORDINATES: protein motif:HMM:NF017496.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004519 - endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03699.1
GO:0009234 - menaquinone biosynthetic process [Evidence IEA]
cyclic dehypoxanthinyl futalosine synthase
COORDINATES: protein motif:HMM:NF012706.2
COORDINATES: protein motif:HMM:NF012235.2
ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF018647.2
GO:0046556 - alpha-L-arabinofuranosidase activity [Evidence IEA]
GO:0046373 - L-arabinose metabolic process [Evidence IEA]
alpha-L-arabinofuranosidase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF003154.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008741 - ribulokinase activity [Evidence IEA]
GO:0019569 - L-arabinose catabolic process to xylulose 5-phosphate [Evidence IEA]
COORDINATES: protein motif:HMM:NF013530.2
COORDINATES: protein motif:HMM:NF020034.2
COORDINATES: similar to AA sequence:RefSeq:WP_002956091.1
GO:0046537 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase activity [Evidence IEA]
2,3-bisphosphoglycerate-independent phosphoglycerate mutase
COORDINATES: protein motif:HMM:NF017103.2
COORDINATES: protein motif:HMM:NF010680.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003697 - single-stranded DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
All proteins in this family for which functions are known are DNA-binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF040570.1
RNA-guided endonuclease TnpB family protein
COORDINATES: protein motif:HMM:NF013223.2
GO:0006811 - monoatomic ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF026799.2
beta-carotene 15,15'-dioxygenase, Brp/Blh family
COORDINATES: protein motif:HMM:NF011256.0
GO:0008897 - holo-[acyl-carrier-protein] synthase activity [Evidence IEA]
GO:0008610 - lipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001924.0
GO:0004751 - ribose-5-phosphate isomerase activity [Evidence IEA]
GO:0009052 - pentose-phosphate shunt, non-oxidative branch [Evidence IEA]
COORDINATES: protein motif:HMM:NF020123.2
GO:0008379 - thioredoxin peroxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03346.1
COORDINATES: protein motif:HMM:NF013200.2
electron transfer flavoprotein subunit beta/FixA family protein
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
electron transfer flavoprotein subunit alpha/FixB family protein
COORDINATES: protein motif:HMM:NF014774.2
COORDINATES: protein motif:HMM:NF013126.2
GO:0004553 - hydrolase activity, hydrolyzing O-glycosyl compounds [Evidence IEA]
COORDINATES: protein motif:HMM:NF014675.2
COORDINATES: protein motif:HMM:NF013408.2
COORDINATES: protein motif:HMM:NF012958.2
GO:0008236 - serine-type peptidase activity [Evidence IEA]
prolyl oligopeptidase family serine peptidase
COORDINATES: protein motif:HMM:NF012869.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024107.2
COORDINATES: protein motif:HMM:NF013053.2
isochorismatase family cysteine hydrolase
COORDINATES: protein motif:HMM:NF015557.2
COORDINATES: protein motif:HMM:TIGR00763.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004252 - serine-type endopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015445.2
TRAP transporter substrate-binding protein DctP
COORDINATES: protein motif:HMM:NF016200.2
COORDINATES: protein motif:HMM:NF018513.2
GO:0005886 - plasma membrane [Evidence IEA]; GO:0031317 - tripartite ATP-independent periplasmic transporter complex [Evidence IEA]
GO:0015556 - C4-dicarboxylate transmembrane transporter activity [Evidence IEA]
GO:0015740 - C4-dicarboxylate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF024852.2
SDR family NAD(P)-dependent oxidoreductase
COORDINATES: protein motif:HMM:NF012955.2
GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013362.2
transcription antitermination factor NusB
COORDINATES: protein motif:HMM:NF016206.2
COORDINATES: protein motif:HMM:NF016147.2
COORDINATES: similar to AA sequence:RefSeq:WP_001012636.1
GO:0005948 - acetolactate synthase complex [Evidence IEA]
GO:0003984 - acetolactate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]; GO:0009099 - valine biosynthetic process [Evidence IEA]
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
biosynthetic-type acetolactate synthase large subunit
COORDINATES: protein motif:HMM:NF008864.0
GO:1990610 - acetolactate synthase regulator activity [Evidence IEA]
GO:0009082 - branched-chain amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004017.0
COORDINATES: protein motif:HMM:NF002086.0
GO:0003852 - 2-isopropylmalate synthase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]; GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018113690.1
GO:0043714 - (R)-citramalate synthase activity [Evidence IEA]
GO:0009097 - isoleucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008730.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0015930 - glutamate synthase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0006537 - glutamate biosynthetic process [Evidence IEA]; GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014798.2
alpha-ketoacid dehydrogenase subunit beta
COORDINATES: protein motif:HMM:TIGR03181.1
GO:0045250 - cytosolic pyruvate dehydrogenase complex [Evidence IEA]
GO:0004739 - pyruvate dehydrogenase (acetyl-transferring) activity [Evidence IEA]
GO:0006086 - acetyl-CoA biosynthetic process from pyruvate [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha
COORDINATES: protein motif:HMM:NF012335.2
zinc-dependent alcohol dehydrogenase family protein
COORDINATES: protein motif:HMM:NF013691.2
COORDINATES: protein motif:HMM:NF000908.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012422.2
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
COORDINATES: protein motif:HMM:NF019607.2
COORDINATES: protein motif:HMM:TIGR00109.1
GO:0004325 - ferrochelatase activity [Evidence IEA]
GO:0006779 - porphyrin-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016925.2
COORDINATES: protein motif:HMM:NF015431.2
LysR substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF003727.1
GO:0004109 - coproporphyrinogen oxidase activity [Evidence IEA]
oxygen-dependent coproporphyrinogen oxidase
COORDINATES: protein motif:HMM:NF013381.2
GO:0004853 - uroporphyrinogen decarboxylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012301.2
COORDINATES: protein motif:HMM:NF014567.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000156 - phosphorelay response regulator activity [Evidence IEA]; GO:0004673 - protein histidine kinase activity [Evidence IEA]
GO:0007165 - signal transduction [Evidence IEA]
HAMP domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF006762.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004655 - porphobilinogen synthase activity [Evidence IEA]
GO:0033014 - tetrapyrrole biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014641.2
GO:0004852 - uroporphyrinogen-III synthase activity [Evidence IEA]
GO:0006782 - protoporphyrinogen IX biosynthetic process [Evidence IEA]; GO:0006780 - uroporphyrinogen III biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00212.1
GO:0004418 - hydroxymethylbilane synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017051.2
GO:0050661 - NADP binding [Evidence IEA]
NAD(P)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF024241.2
GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00007.1
GO:0003949 - 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase activity [Evidence IEA]
1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino]imidazole-4- carboxamide isomerase
COORDINATES: protein motif:HMM:NF002211.1
GO:0003684 - damaged DNA binding [Evidence IEA]; GO:0019104 - DNA N-glycosylase activity [Evidence IEA]; GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]; GO:0016799 - hydrolase activity, hydrolyzing N-glycosyl compounds [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0008534 - oxidized purine nucleobase lesion DNA N-glycosylase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0006284 - base-excision repair [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase
COORDINATES: similar to AA sequence:RefSeq:WP_013176754.1
COORDINATES: similar to AA sequence:RefSeq:WP_013176753.1
COORDINATES: protein motif:HMM:NF013934.2
GO:0030272 - 5-formyltetrahydrofolate cyclo-ligase activity [Evidence IEA]
GO:0006730 - one-carbon metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014608.2
COORDINATES: protein motif:HMM:NF003921.0
GO:0009358 - polyphosphate kinase complex [Evidence IEA]
GO:0008976 - polyphosphate kinase activity [Evidence IEA]
GO:0006799 - polyphosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003559.0
GO:0008929 - methylglyoxal synthase activity [Evidence IEA]
GO:0019242 - methylglyoxal biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00546.1
GO:0016410 - N-acyltransferase activity [Evidence IEA]
GO:0042158 - lipoprotein biosynthetic process [Evidence IEA]; GO:0006497 - protein lipidation [Evidence IEA]
COORDINATES: protein motif:HMM:NF014325.2
GO:0006813 - potassium ion transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014443.2
COORDINATES: protein motif:HMM:NF005559.1
COORDINATES: protein motif:HMM:NF007043.0
COORDINATES: similar to AA sequence:RefSeq:WP_013176655.1
COORDINATES: protein motif:HMM:NF021824.2
putative nucleotidyltransferase substrate binding domain-containing protein
COORDINATES: protein motif:HMM:NF013122.2
GO:0008408 - 3'-5' exonuclease activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013088.2
COORDINATES: protein motif:HMM:NF015438.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF016926.2
COORDINATES: similar to AA sequence:RefSeq:WP_013176773.1
GO:0003987 - acetate-CoA ligase activity [Evidence IEA]
GO:0019427 - acetyl-CoA biosynthetic process from acetate [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013176772.1
COORDINATES: protein motif:HMM:TIGR03647.1
COORDINATES: protein motif:HMM:TIGR03648.1
COORDINATES: protein motif:HMM:TIGR00151.1
GO:0008685 - 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity [Evidence IEA]
GO:0019288 - isopentenyl diphosphate biosynthetic process, methylerythritol 4-phosphate pathway [Evidence IEA]
2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase
COORDINATES: protein motif:HMM:NF025178.2
non-heme iron oxygenase ferredoxin subunit
COORDINATES: protein motif:HMM:TIGR01981.1
GO:0005198 - structural molecule activity [Evidence IEA]
GO:0016226 - iron-sulfur cluster assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF016876.2
GO:0008657 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) inhibitor activity [Evidence IEA]; GO:0042803 - protein homodimerization activity [Evidence IEA]
GO:0030541 - plasmid partitioning [Evidence IEA]; GO:0051290 - protein heterotetramerization [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: protein motif:HMM:NF021253.2
COORDINATES: protein motif:HMM:TIGR01980.1
COORDINATES: similar to AA sequence:RefSeq:WP_012766574.1
COORDINATES: protein motif:HMM:NF012298.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IEA]
GO:0006468 - protein phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001911.0
COORDINATES: protein motif:HMM:NF006803.0
GO:0008686 - 3,4-dihydroxy-2-butanone-4-phosphate synthase activity [Evidence IEA]; GO:0003935 - GTP cyclohydrolase II activity [Evidence IEA]
bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II
COORDINATES: protein motif:HMM:TIGR00187.1
COORDINATES: protein motif:HMM:TIGR00326.1
GO:0008703 - 5-amino-6-(5-phosphoribosylamino)uracil reductase activity [Evidence IEA]; GO:0008835 - diaminohydroxyphosphoribosylaminopyrimidine deaminase activity [Evidence IEA]
bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD
COORDINATES: nucleotide motif:Rfam:14.4:RF00050
FMN riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: similar to AA sequence:RefSeq:WP_013179234.1
PAS domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF014164.2
COORDINATES: protein motif:HMM:TIGR01389.1
GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF008900.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004825 - methionine-tRNA ligase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
GO:0006431 - methionyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012791.2
COORDINATES: protein motif:HMM:TIGR00835.1
GO:0005283 - amino acid:sodium symporter activity [Evidence IEA]; GO:0015293 - symporter activity [Evidence IEA]
GO:0006865 - amino acid transport [Evidence IEA]; GO:0006814 - sodium ion transport [Evidence IEA]
alanine/glycine:cation symporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013177989.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004784 - superoxide dismutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025445.2
COORDINATES: protein motif:HMM:NF024701.2
COORDINATES: protein motif:HMM:NF015898.2
GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]
BlaI/MecI/CopY family transcriptional regulator
COORDINATES: protein motif:HMM:NF017390.2
COORDINATES: protein motif:HMM:TIGR03886.1
COORDINATES: protein motif:HMM:NF014667.2
COORDINATES: protein motif:HMM:TIGR01777.1
COORDINATES: protein motif:HMM:NF011456.0
GO:0004073 - aspartate-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
GO:0008652 - amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03082.1
GO:0010468 - regulation of gene expression [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_008281042.1
GO:0080135 - regulation of cellular response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF027681.2
COORDINATES: protein motif:HMM:TIGR00087.1
GO:0008254 - 3'-nucleotidase activity [Evidence IEA]; GO:0008253 - 5'-nucleotidase activity [Evidence IEA]
GO:0006950 - response to stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF020604.2
COORDINATES: protein motif:HMM:NF039475.1
GO:0008643 - carbohydrate transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013697.2
helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF008168.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01327.1
GO:0004617 - phosphoglycerate dehydrogenase activity [Evidence IEA]
GO:0006564 - L-serine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012488.2
alanine--glyoxylate aminotransferase family protein
COORDINATES: protein motif:HMM:NF017020.2
COORDINATES: protein motif:HMM:NF014021.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
nucleotidyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF022479.2
COORDINATES: protein motif:HMM:NF013188.2
GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IEA]
GO:0006814 - sodium ion transport [Evidence IEA]
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF024968.2
GO:0016757 - glycosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024880.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014714.2
COORDINATES: protein motif:HMM:NF003657.0
GO:0008780 - acyl-[acyl-carrier-protein]-UDP-N-acetylglucosamine O-acyltransferase activity [Evidence IEA]
acyl-ACP--UDP-N-acetylglucosamine O-acyltransferase
COORDINATES: protein motif:HMM:NF000582.1
COORDINATES: protein motif:HMM:NF013567.2
GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
COORDINATES: protein motif:HMM:NF015299.2
UDP-3-O-acyl-N-acetylglucosamine deacetylase
COORDINATES: protein motif:HMM:NF002060.0
GO:0009245 - lipid A biosynthetic process [Evidence IEA]
UDP-3-O-(3-hydroxymyristoyl)glucosamine N-acyltransferase
COORDINATES: protein motif:HMM:NF010539.0
GO:0008360 - regulation of cell shape [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03725.1
GO:0003725 - double-stranded RNA binding [Evidence IEA]
GO:0006400 - tRNA modification [Evidence IEA]
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB
COORDINATES: protein motif:HMM:TIGR00150.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE
COORDINATES: protein motif:HMM:TIGR03263.1
GO:0004385 - guanylate kinase activity [Evidence IEA]
GO:0015949 - nucleobase-containing small molecule interconversion [Evidence IEA]
COORDINATES: protein motif:HMM:NF013365.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]
DNA-directed RNA polymerase subunit omega
COORDINATES: protein motif:HMM:TIGR00521.1
GO:0004632 - phosphopantothenate--cysteine ligase activity [Evidence IEA]; GO:0004633 - phosphopantothenoylcysteine decarboxylase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]; GO:0015939 - pantothenate metabolic process [Evidence IEA]
bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC
COORDINATES: protein motif:HMM:TIGR01529.1
GO:0006525 - arginine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01027.1
GO:0004349 - glutamate 5-kinase activity [Evidence IEA]
GO:0006561 - proline biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012521.2
COORDINATES: protein motif:HMM:NF014038.2
COORDINATES: protein motif:HMM:NF012920.2
COORDINATES: protein motif:HMM:NF013538.2
COORDINATES: similar to AA sequence:RefSeq:WP_017370549.1
GO:0004478 - methionine adenosyltransferase activity [Evidence IEA]
GO:0006556 - S-adenosylmethionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024698.2
COORDINATES: protein motif:HMM:NF014045.2
COORDINATES: similar to AA sequence:RefSeq:WP_003156585.1
COORDINATES: protein motif:HMM:NF004012.0
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB
COORDINATES: protein motif:HMM:NF014074.2
ATP-dependent Clp protease proteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013176562.1
COORDINATES: protein motif:HMM:NF014618.2
COORDINATES: protein motif:HMM:NF014135.2
COORDINATES: protein motif:HMM:NF013629.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014342.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF006826.0
GO:0003934 - GTP cyclohydrolase I activity [Evidence IEA]
GO:0042559 - pteridine-containing compound biosynthetic process [Evidence IEA]; GO:0046654 - tetrahydrofolate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006975.0
GO:0016722 - oxidoreductase activity, acting on metal ions [Evidence IEA]
DNA starvation/stationary phase protection protein Dps
COORDINATES: protein motif:HMM:NF019887.2
COORDINATES: protein motif:HMM:NF013307.2
GO:0045282 - plasma membrane succinate dehydrogenase complex [Evidence IEA]
GO:0000104 - succinate dehydrogenase activity [Evidence IEA]
succinate dehydrogenase, cytochrome b556 subunit
succinate dehydrogenase hydrophobic membrane anchor subunit
COORDINATES: protein motif:HMM:TIGR01816.1
GO:0022900 - electron transport chain [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
succinate dehydrogenase flavoprotein subunit
COORDINATES: protein motif:HMM:NF004616.0
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008177 - succinate dehydrogenase (ubiquinone) activity [Evidence IEA]
succinate dehydrogenase iron-sulfur subunit
COORDINATES: protein motif:HMM:TIGR00400.1
GO:0015095 - magnesium ion transmembrane transporter activity [Evidence IEA]
GO:0015693 - magnesium ion transport [Evidence IEA]
LuxR C-terminal-related transcriptional regulator
COORDINATES: protein motif:HMM:NF014703.2
GO:0005886 - plasma membrane [Evidence IEA]
GO:0050380 - undecaprenyl-diphosphatase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002886926.1
COORDINATES: protein motif:HMM:NF025053.2
protein phosphatase 2C domain-containing protein
COORDINATES: protein motif:HMM:TIGR00132.1
GO:0030956 - glutamyl-tRNA(Gln) amidotransferase complex [Evidence IEA]
GO:0050567 - glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity [Evidence IEA]
GO:0006424 - glutamyl-tRNA aminoacylation [Evidence IEA]
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA
COORDINATES: similar to AA sequence:RefSeq:WP_002558970.1
COORDINATES: protein motif:HMM:NF013022.2
GO:0004526 - ribonuclease P activity [Evidence IEA]
GO:0006396 - RNA processing [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002452125.1
membrane protein insertion efficiency factor YidD
COORDINATES: protein motif:HMM:TIGR03592.1
YidC/Oxa1 family membrane protein insertase
COORDINATES: protein motif:HMM:NF013583.2
R3H domain-containing nucleic acid-binding protein
COORDINATES: protein motif:HMM:NF037527.2
COORDINATES: protein motif:HMM:NF012601.2
GO:0052717 - tRNA-specific adenosine-34 deaminase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021832.2
COORDINATES: protein motif:HMM:NF000996.0
GO:0008939 - nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity [Evidence IEA]
GO:0009236 - cobalamin biosynthetic process [Evidence IEA]
nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase
COORDINATES: protein motif:HMM:NF001989.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177182.1
COORDINATES: protein motif:HMM:NF012382.2
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015164.2
GO:0016880 - acid-ammonia (or amide) ligase activity [Evidence IEA]
adenosylcobinamide-phosphate synthase CbiB
COORDINATES: protein motif:HMM:NF004637.0
GO:0008817 - corrinoid adenosyltransferase activity [Evidence IEA]
cob(I)yrinic acid a,c-diamide adenosyltransferase
COORDINATES: protein motif:HMM:NF014060.2
COORDINATES: protein motif:HMM:NF014685.2
GO:0051073 - adenosylcobinamide-GDP ribazoletransferase activity [Evidence IEA]; GO:0008818 - cobalamin 5'-phosphate synthase activity [Evidence IEA]
adenosylcobinamide-GDP ribazoletransferase
COORDINATES: protein motif:HMM:TIGR00536.1
GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0018364 - peptidyl-glutamine methylation [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
peptide chain release factor N(5)-glutamine methyltransferase
COORDINATES: protein motif:HMM:TIGR00077.1
GO:0009306 - protein secretion [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF016944.2
GO:0004352 - glutamate dehydrogenase (NAD+) activity [Evidence IEA]
GO:0019551 - glutamate catabolic process to 2-oxoglutarate [Evidence IEA]
COORDINATES: protein motif:HMM:NF015983.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
coproporphyrinogen-III oxidase family protein
COORDINATES: protein motif:HMM:NF013347.2
methyltransferase domain-containing protein
COORDINATES: protein motif:HMM:NF013026.2
COORDINATES: protein motif:HMM:NF016724.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017442.2
COORDINATES: protein motif:HMM:TIGR00357.1
GO:0033743 - peptide-methionine (R)-S-oxide reductase activity [Evidence IEA]
GO:0030091 - protein repair [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
peptide-methionine (R)-S-oxide reductase MsrB
COORDINATES: protein motif:HMM:NF012664.2
COORDINATES: protein motif:HMM:NF013247.2
COORDINATES: protein motif:HMM:NF040370.1
RNA-binding S4 domain-containing protein
COORDINATES: protein motif:HMM:NF012780.2
COORDINATES: protein motif:HMM:TIGR00243.1
GO:0030604 - 1-deoxy-D-xylulose-5-phosphate reductoisomerase activity [Evidence IEA]
1-deoxy-D-xylulose-5-phosphate reductoisomerase
COORDINATES: protein motif:HMM:NF014244.2
COORDINATES: protein motif:HMM:TIGR00417.1
COORDINATES: protein motif:HMM:TIGR03330.1
GO:0004014 - adenosylmethionine decarboxylase activity [Evidence IEA]
GO:0008295 - spermidine biosynthetic process [Evidence IEA]
GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012745.2
COORDINATES: protein motif:HMM:TIGR00040.1
GO:0046872 - metal ion binding [Evidence IEA]; GO:0042578 - phosphoric ester hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019581.2
GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF012575.2
GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF025910.2
COORDINATES: protein motif:HMM:NF015853.2
cytochrome c-type biogenesis protein CcmH
COORDINATES: protein motif:HMM:NF027651.2
COORDINATES: protein motif:HMM:NF015085.2
COORDINATES: protein motif:HMM:NF013725.2
GO:0020037 - heme binding [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]
COORDINATES: protein motif:HMM:NF015344.2
GO:0015232 - heme transmembrane transporter activity [Evidence IEA]
GO:0017004 - cytochrome complex assembly [Evidence IEA]; GO:0015886 - heme transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01189.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]
GO:0015439 - ABC-type heme transporter activity [Evidence IEA]
GO:0015886 - heme transport [Evidence IEA]
heme ABC exporter ATP-binding protein CcmA
COORDINATES: protein motif:HMM:NF014713.2
cytochrome c biogenesis CcdA family protein
flagellar biosynthesis anti-sigma factor FlgM
COORDINATES: similar to AA sequence:RefSeq:WP_013178587.1
COORDINATES: protein motif:HMM:NF013540.2
helix-turn-helix transcriptional regulator
COORDINATES: protein motif:HMM:NF019540.2
GO:0003729 - mRNA binding [Evidence IEA]
type II toxin-antitoxin system HicA family toxin
COORDINATES: protein motif:HMM:NF021356.2
GO:0004521 - endoribonuclease activity [Evidence IEA]
GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00287.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF021207.2
GO:0003674 - molecular_function [Evidence IEA]
TIGR02710 family CRISPR-associated CARF protein
COORDINATES: protein motif:HMM:TIGR01877.1
COORDINATES: protein motif:HMM:NF021500.2
glucodextranase DOMON-like domain-containing protein
COORDINATES: protein motif:HMM:TIGR01826.1
uridine diphosphate-N-acetylglucosamine-binding protein YvcK
COORDINATES: protein motif:HMM:NF015620.2
COORDINATES: protein motif:HMM:NF016895.2
GO:0042834 - peptidoglycan binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01855.1
GO:0016884 - carbon-nitrogen ligase activity, with glutamine as amido-N-donor [Evidence IEA]; GO:0000107 - imidazoleglycerol-phosphate synthase activity [Evidence IEA]
imidazole glycerol phosphate synthase subunit HisH
COORDINATES: protein motif:HMM:NF002114.0
imidazoleglycerol-phosphate dehydratase HisB
COORDINATES: protein motif:HMM:TIGR01141.1
GO:0004400 - histidinol-phosphate transaminase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024821.2
COORDINATES: protein motif:HMM:TIGR01354.1
GO:0004126 - cytidine deaminase activity [Evidence IEA]
GO:0008655 - pyrimidine-containing compound salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF013391.2
COORDINATES: protein motif:HMM:TIGR00043.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004540 - ribonuclease activity [Evidence IEA]
GO:0042254 - ribosome biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF019318.2
COORDINATES: similar to AA sequence:RefSeq:WP_002389231.1
COORDINATES: protein motif:HMM:NF010186.0
flotillin-like protein involved in membrane lipid rafts; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012783.2
COORDINATES: protein motif:HMM:NF012589.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0046316 - gluconokinase activity [Evidence IEA]
GO:0046177 - D-gluconate catabolic process [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF040138.1
COORDINATES: protein motif:HMM:NF012899.2
GO:0003991 - acetylglutamate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014877.2
COORDINATES: protein motif:HMM:NF012766.2
GO:0008233 - peptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00419.1
GO:0004807 - triose-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018045.2
COORDINATES: protein motif:HMM:NF002447.0
COORDINATES: protein motif:HMM:NF012321.2
COORDINATES: protein motif:HMM:NF014910.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
FAD-binding and (Fe-S)-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012742.2
substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF016726.2
COORDINATES: protein motif:HMM:NF013256.2
COORDINATES: protein motif:HMM:NF014893.2
COORDINATES: protein motif:HMM:TIGR00644.1
GO:0008297 - single-stranded DNA exodeoxyribonuclease activity [Evidence IEA]
single-stranded-DNA-specific exonuclease RecJ
COORDINATES: protein motif:HMM:NF018058.2
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013245.2
COORDINATES: protein motif:HMM:TIGR00042.1
GO:0016462 - pyrophosphatase activity [Evidence IEA]
RdgB/HAM1 family non-canonical purine NTP pyrophosphatase
COORDINATES: protein motif:HMM:TIGR01966.1
GO:0004549 - tRNA-specific ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00067.1
GO:0008881 - glutamate racemase activity [Evidence IEA]
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02063.1
GO:0008997 - ribonuclease R activity [Evidence IEA]
GO:0006401 - RNA catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01369.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006807 - nitrogen compound metabolic process [Evidence IEA]
carbamoyl-phosphate synthase large subunit
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024672.2
COORDINATES: protein motif:HMM:NF008865.0
GO:0004664 - prephenate dehydratase activity [Evidence IEA]
GO:0009094 - L-phenylalanine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015874266.1
COORDINATES: protein motif:HMM:NF024846.2
COORDINATES: similar to AA sequence:RefSeq:WP_004924130.1
COORDINATES: protein motif:HMM:NF025330.2
COORDINATES: protein motif:HMM:TIGR03168.1
1-phosphofructokinase family hexose kinase
COORDINATES: protein motif:HMM:NF013292.2
isoaspartyl peptidase/L-asparaginase family protein
COORDINATES: protein motif:HMM:NF015716.2
GO:0000902 - cell morphogenesis [Evidence IEA]
GO:0008168 - methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00553.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]; GO:0008153 - para-aminobenzoic acid biosynthetic process [Evidence IEA]
aminodeoxychorismate synthase component I
COORDINATES: protein motif:HMM:NF041359.1
COORDINATES: protein motif:HMM:NF001319.0
GO:0004764 - shikimate 3-dehydrogenase (NADP+) activity [Evidence IEA]
GO:0019632 - shikimate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012376.2
COORDINATES: protein motif:HMM:TIGR00641.1
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0016866 - intramolecular transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015649.2
bacterial transcriptional activator domain-containing protein
COORDINATES: protein motif:HMM:NF025025.2
COORDINATES: protein motif:HMM:NF013672.2
polysaccharide deacetylase family protein
COORDINATES: protein motif:HMM:NF024871.2
O-antigen and teichoic acid export membrane protein
COORDINATES: protein motif:HMM:NF033564.0
COORDINATES: protein motif:HMM:NF024258.2
COORDINATES: protein motif:HMM:NF002849.0
GO:0015035 - protein-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024853.2
COORDINATES: protein motif:HMM:NF012621.2
GO:0046872 - metal ion binding [Evidence IEA]
heavy metal-associated domain-containing protein
COORDINATES: protein motif:HMM:NF015798.2
four-helix bundle copper-binding protein
COORDINATES: protein motif:HMM:NF019401.2
COORDINATES: protein motif:HMM:NF022747.2
COORDINATES: protein motif:HMM:TIGR02823.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF001664.0
COORDINATES: similar to AA sequence:RefSeq:WP_002387688.1
COORDINATES: protein motif:HMM:NF033681.1
ExeM/NucH family extracellular endonuclease
COORDINATES: similar to AA sequence:RefSeq:WP_011145659.1
COORDINATES: similar to AA sequence:RefSeq:WP_011531388.1
COORDINATES: protein motif:HMM:NF024245.2
COORDINATES: protein motif:HMM:TIGR00361.1
GO:0009290 - DNA import into cell involved in transformation [Evidence IEA]
DNA internalization-related competence protein ComEC/Rec2
COORDINATES: protein motif:HMM:TIGR01128.1
COORDINATES: protein motif:HMM:TIGR00750.1
GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:1903826 - L-arginine transmembrane transport [Evidence IEA]; GO:0015819 - lysine transport [Evidence IEA]; GO:0015822 - ornithine transport [Evidence IEA]
methylmalonyl Co-A mutase-associated GTPase MeaB
COORDINATES: protein motif:HMM:TIGR01510.1
GO:0004595 - pantetheine-phosphate adenylyltransferase activity [Evidence IEA]
GO:0015937 - coenzyme A biosynthetic process [Evidence IEA]
pantetheine-phosphate adenylyltransferase
COORDINATES: protein motif:HMM:NF013589.2
GO:0051082 - unfolded protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012264.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012470.2
GO:0016791 - phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04001.1
GO:0019213 - deacetylase activity [Evidence IEA]
bacillithiol biosynthesis deacetylase BshB1
COORDINATES: protein motif:HMM:TIGR00023.1
GO:0008374 - O-acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]
glycerol-3-phosphate 1-O-acyltransferase PlsY
COORDINATES: protein motif:HMM:TIGR01065.1
COORDINATES: protein motif:HMM:NF021371.2
COORDINATES: protein motif:HMM:NF014015.2
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012730.2
COORDINATES: protein motif:HMM:NF025151.2
COORDINATES: protein motif:HMM:TIGR00486.1
GO:0051540 - metal cluster binding [Evidence IEA]
GO:0008150 - biological_process [Evidence IEA]
Nif3-like dinuclear metal center hexameric protein
COORDINATES: protein motif:HMM:TIGR00041.1
GO:0004798 - thymidylate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013178364.1
COORDINATES: protein motif:HMM:NF024850.2
COORDINATES: protein motif:HMM:NF014684.2
GO:0015803 - branched-chain amino acid transport [Evidence IEA]
branched-chain amino acid ABC transporter permease
COORDINATES: protein motif:HMM:NF012711.2
COORDINATES: protein motif:HMM:NF016952.2
COORDINATES: protein motif:HMM:NF000940.0
GO:0009331 - glycerol-3-phosphate dehydrogenase complex [Evidence IEA]
GO:0047952 - glycerol-3-phosphate dehydrogenase [NAD(P)+] activity [Evidence IEA]; GO:0051287 - NAD binding [Evidence IEA]
GO:0046167 - glycerol-3-phosphate biosynthetic process [Evidence IEA]
NAD(P)H-dependent glycerol-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF019310.2
COORDINATES: protein motif:HMM:NF024214.2
GO:0005525 - GTP binding [Evidence IEA]; GO:0061603 - molybdenum cofactor guanylyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013866.2
COORDINATES: protein motif:HMM:TIGR00562.1
GO:0004729 - oxygen-dependent protoporphyrinogen oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012492.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
GO:0004672 - protein kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF006873.0
GO:0008760 - UDP-N-acetylglucosamine 1-carboxyvinyltransferase activity [Evidence IEA]
UDP-N-acetylglucosamine 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:NF003745.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
ATP-dependent Clp protease ATP-binding subunit ClpX
COORDINATES: similar to AA sequence:RefSeq:WP_002869062.1
COORDINATES: protein motif:HMM:TIGR00115.1
GO:0005854 - nascent polypeptide-associated complex [Evidence IEA]
GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]; GO:0051082 - unfolded protein binding [Evidence IEA]
GO:0051083 - 'de novo' cotranslational protein folding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00629.1
GO:0004518 - nuclease activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0009650 - UV protection [Evidence IEA]
COORDINATES: protein motif:HMM:NF018178.2
COORDINATES: protein motif:HMM:NF024703.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004386 - helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0006139 - nucleobase-containing compound metabolic process [Evidence IEA]
helicase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF040105.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013998.2
COORDINATES: protein motif:HMM:NF011080.0
GO:0004134 - 4-alpha-glucanotransferase activity [Evidence IEA]
GO:0005980 - glycogen catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016176.2
COORDINATES: protein motif:HMM:NF012383.2
GO:0009116 - nucleoside metabolic process [Evidence IEA]
phosphoribosyltransferase family protein
COORDINATES: protein motif:HMM:NF002937.0
GO:0030729 - acetoacetate-CoA ligase activity [Evidence IEA]
GO:0019287 - isopentenyl diphosphate biosynthetic process, mevalonate pathway [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013178285.1
COORDINATES: similar to AA sequence:RefSeq:WP_000086807.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration DNA helicase RuvB
COORDINATES: protein motif:HMM:TIGR00797.1
GO:0042910 - xenobiotic transmembrane transporter activity [Evidence IEA]
GO:0006855 - xenobiotic transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012904.2
GO:0009436 - glyoxylate catabolic process [Evidence IEA]; GO:0071704 - organic substance metabolic process [Evidence IEA]
dihydrodipicolinate synthase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_003212058.1
GO:0008864 - formyltetrahydrofolate deformylase activity [Evidence IEA]
GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF005592.0
COORDINATES: protein motif:HMM:TIGR01391.1
GO:0003896 - DNA primase activity [Evidence IEA]
GO:0006269 - DNA replication, synthesis of RNA primer [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013177137.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0022857 - transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020650.2
GO:0140359 - ABC-type transporter activity [Evidence IEA]
GO:0020037 - heme binding [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02149.1
GO:0004373 - glycogen (starch) synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012257.2
GO:0030552 - cAMP binding [Evidence IEA]; GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]
Crp/Fnr family transcriptional regulator
COORDINATES: protein motif:HMM:NF006841.0
COORDINATES: protein motif:HMM:TIGR00670.1
GO:0016597 - amino acid binding [Evidence IEA]; GO:0004070 - aspartate carbamoyltransferase activity [Evidence IEA]
GO:0006207 - 'de novo' pyrimidine nucleobase biosynthetic process [Evidence IEA]; GO:0006520 - amino acid metabolic process [Evidence IEA]
aspartate carbamoyltransferase catalytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_003048067.1
bifunctional pyr operon transcriptional regulator/uracil phosphoribosyltransferase PyrR
COORDINATES: protein motif:HMM:NF024822.2
COORDINATES: similar to AA sequence:RefSeq:WP_003717655.1
GO:0016149 - translation release factor activity, codon specific [Evidence IEA]
GO:0006415 - translational termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF017920.2
COORDINATES: protein motif:HMM:NF013506.2
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177390.1
GO:0042314 - bacteriochlorophyll binding [Evidence IEA]
GO:0019684 - photosynthesis, light reaction [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01930.1
GO:0016746 - acyltransferase activity [Evidence IEA]
GO:0006635 - fatty acid beta-oxidation [Evidence IEA]
COORDINATES: protein motif:HMM:NF002794.0
GO:0008880 - glucuronate isomerase activity [Evidence IEA]
GO:0006064 - glucuronate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01313.1
GO:0046177 - D-gluconate catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021387.2
GO:0050043 - lactate racemase activity [Evidence IEA]
lactate racemase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_002938050.1
COORDINATES: protein motif:HMM:NF027582.2
GO:0003700 - DNA-binding transcription factor activity [Evidence IEA]; GO:0043565 - sequence-specific DNA binding [Evidence IEA]; GO:0000976 - transcription cis-regulatory region binding [Evidence IEA]
GO:0006351 - DNA-templated transcription [Evidence IEA]; GO:0045892 - negative regulation of DNA-templated transcription [Evidence IEA]; GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
LacI family DNA-binding transcriptional regulator
TRAP transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013177743.1
GO:0050656 - 3'-phosphoadenosine 5'-phosphosulfate binding [Evidence IEA]; GO:0008146 - sulfotransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004837.0
COORDINATES: protein motif:HMM:NF037360.2
COORDINATES: similar to AA sequence:RefSeq:WP_013176896.1
COORDINATES: protein motif:HMM:NF013539.2
GO:0097367 - carbohydrate derivative binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025895.2
COORDINATES: similar to AA sequence:RefSeq:WP_013178438.1
COORDINATES: similar to AA sequence:RefSeq:WP_016292883.1
GO:0004845 - uracil phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013146.2
COORDINATES: similar to AA sequence:RefSeq:WP_015703970.1
GO:0008761 - UDP-N-acetylglucosamine 2-epimerase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]
UDP-N-acetylglucosamine 2-epimerase (non-hydrolyzing)
COORDINATES: protein motif:HMM:NF014690.2
GO:0043772 - acyl-phosphate glycerol-3-phosphate acyltransferase activity [Evidence IEA]
GO:0006654 - phosphatidic acid biosynthetic process [Evidence IEA]; GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00613.1
COORDINATES: protein motif:HMM:NF039561.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178626.1
GO:0008094 - ATP-dependent activity, acting on DNA [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009432 - SOS response [Evidence IEA]
COORDINATES: protein motif:HMM:NF013429.2
sugar phosphate isomerase/epimerase family protein
COORDINATES: protein motif:HMM:NF024799.2
GO:0008643 - carbohydrate transport [Evidence IEA]
sugar ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF033573.1
COORDINATES: protein motif:HMM:NF018038.2
COORDINATES: similar to AA sequence:RefSeq:WP_076611378.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_013538518.1
COORDINATES: similar to AA sequence:RefSeq:WP_016241890.1
COORDINATES: protein motif:HMM:TIGR02152.1
GO:0004747 - ribokinase activity [Evidence IEA]
GO:0019303 - D-ribose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015957.2
COORDINATES: protein motif:HMM:NF015690.2
COORDINATES: protein motif:HMM:NF018021.2
COORDINATES: protein motif:HMM:NF016167.2
COORDINATES: protein motif:HMM:NF037088.2
prepilin-type N-terminal cleavage/methylation domain-containing protein
COORDINATES: protein motif:HMM:NF024248.2
COORDINATES: protein motif:HMM:NF014850.2
glycoside hydrolase family 2 TIM barrel-domain containing protein
COORDINATES: protein motif:HMM:NF016497.2
COORDINATES: protein motif:HMM:NF004825.0
COORDINATES: protein motif:HMM:NF017758.2
COORDINATES: protein motif:HMM:NF022072.2
COORDINATES: protein motif:HMM:NF019845.2
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0004024 - alcohol dehydrogenase activity, zinc-dependent [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF003013.0
GO:0004020 - adenylylsulfate kinase activity [Evidence IEA]
GO:0006790 - sulfur compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF003166.0
GO:0004781 - sulfate adenylyltransferase (ATP) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012673.2
GO:0008441 - 3'(2'),5'-bisphosphate nucleotidase activity [Evidence IEA]
3'(2'),5'-bisphosphate nucleotidase CysQ
COORDINATES: protein motif:HMM:NF024831.2
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF016800.2
COORDINATES: protein motif:HMM:NF024832.2
COORDINATES: protein motif:HMM:NF002223.0
GO:0004019 - adenylosuccinate synthase activity [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]
GO:0006164 - purine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF018184.2
COORDINATES: protein motif:HMM:TIGR01800.1
GO:0046912 - acyltransferase activity, acyl groups converted into alkyl on transfer [Evidence IEA]
COORDINATES: protein motif:HMM:NF024592.2
COORDINATES: protein motif:HMM:NF012779.2
COORDINATES: protein motif:HMM:NF012880.2
thiamine pyrophosphate-dependent dehydrogenase E1 component subunit alpha
COORDINATES: protein motif:HMM:NF012424.2
dihydrolipoamide acetyltransferase family protein
COORDINATES: protein motif:HMM:TIGR01132.1
GO:0004614 - phosphoglucomutase activity [Evidence IEA]
phosphoglucomutase (alpha-D-glucose-1,6-bisphosphate-dependent)
COORDINATES: protein motif:HMM:NF024116.2
COORDINATES: protein motif:HMM:NF013871.2
COORDINATES: similar to AA sequence:RefSeq:WP_007271791.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0008175 - tRNA methyltransferase activity [Evidence IEA]
tRNA (cytidine(34)-2'-O)-methyltransferase
COORDINATES: protein motif:HMM:NF017181.2
COORDINATES: protein motif:HMM:NF024917.2
COORDINATES: protein motif:HMM:TIGR04018.1
YpdA family putative bacillithiol disulfide reductase
COORDINATES: protein motif:HMM:TIGR01083.1
GO:0003906 - DNA-(apurinic or apyrimidinic site) endonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012694.2
type II secretion system F family protein
COORDINATES: protein motif:HMM:NF012772.2
COORDINATES: protein motif:HMM:NF013630.2
LysM peptidoglycan-binding domain-containing protein
COORDINATES: protein motif:HMM:NF012515.2
GO:0016301 - kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013465.2
zinc ABC transporter substrate-binding protein
metal ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF013143.2
GO:0030001 - metal ion transport [Evidence IEA]
short chain dehydrogenase/reductase family oxidoreductase
COORDINATES: protein motif:HMM:NF024883.2
GAF domain-containing sensor histidine kinase
COORDINATES: protein motif:HMM:NF001809.0
COORDINATES: protein motif:HMM:NF012905.2
COORDINATES: protein motif:HMM:TIGR00804.1
GO:0005337 - nucleoside transmembrane transporter activity [Evidence IEA]
GO:0015858 - nucleoside transport [Evidence IEA]
NupC/NupG family nucleoside CNT transporter
COORDINATES: protein motif:HMM:NF014688.2
COORDINATES: protein motif:HMM:NF012497.2
GO:0003866 - 3-phosphoshikimate 1-carboxyvinyltransferase activity [Evidence IEA]
GO:0009423 - chorismate biosynthetic process [Evidence IEA]
3-phosphoshikimate 1-carboxyvinyltransferase
COORDINATES: protein motif:HMM:TIGR00017.1
GO:0004127 - cytidylate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039482.1
COORDINATES: protein motif:HMM:TIGR00254.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019846.2
COORDINATES: protein motif:HMM:TIGR03492.1
lipid-A-disaccharide synthase-related protein
COORDINATES: protein motif:HMM:NF004203.0
COORDINATES: protein motif:HMM:NF019473.2
nuclear transport factor 2 family protein
COORDINATES: protein motif:HMM:TIGR02284.1
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000138935.1
metal-sensitive transcriptional regulator
COORDINATES: protein motif:HMM:NF016064.2
YeeE/YedE thiosulfate transporter family protein
COORDINATES: similar to AA sequence:RefSeq:WP_002664853.1
COORDINATES: protein motif:HMM:NF015953.2
COORDINATES: protein motif:HMM:NF009395.0
GO:0003849 - 3-deoxy-7-phosphoheptulonate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015559.2
COORDINATES: protein motif:HMM:NF009538.1
GO:0006886 - intracellular protein transport [Evidence IEA]; GO:0017038 - protein import [Evidence IEA]; GO:0006605 - protein targeting [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02127.1
GO:0004590 - orotidine-5'-phosphate decarboxylase activity [Evidence IEA]
GO:0009220 - pyrimidine ribonucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03599.1
COORDINATES: protein motif:HMM:NF015721.2
Asp23/Gls24 family envelope stress response protein
COORDINATES: protein motif:HMM:NF016351.2
COORDINATES: protein motif:HMM:NF020946.2
COORDINATES: similar to AA sequence:RefSeq:WP_018465116.1
GO:0006777 - Mo-molybdopterin cofactor biosynthetic process [Evidence IEA]
cyclic pyranopterin monophosphate synthase MoaC
COORDINATES: protein motif:HMM:TIGR00071.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013718.2
COORDINATES: protein motif:HMM:NF022100.2
COORDINATES: protein motif:HMM:NF024091.2
COORDINATES: protein motif:HMM:NF013961.2
COORDINATES: protein motif:HMM:NF013132.2
COORDINATES: protein motif:HMM:NF014017.2
COORDINATES: protein motif:HMM:TIGR01070.1
GO:0006298 - mismatch repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00585.2
COORDINATES: protein motif:HMM:NF025690.2
COORDINATES: protein motif:HMM:NF015587.2
YihY/virulence factor BrkB family protein
COORDINATES: protein motif:HMM:TIGR00126.1
GO:0004139 - deoxyribose-phosphate aldolase activity [Evidence IEA]
GO:0009264 - deoxyribonucleotide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013970.2
type II toxin-antitoxin system VapC family toxin
COORDINATES: protein motif:HMM:NF017365.2
COORDINATES: protein motif:HMM:NF019640.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025052.2
COORDINATES: protein motif:HMM:NF014373.2
COORDINATES: protein motif:HMM:TIGR00131.1
GO:0004335 - galactokinase activity [Evidence IEA]
GO:0006012 - galactose metabolic process [Evidence IEA]
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019522.2
metal ABC transporter substrate-binding protein
GO:0030001 - metal ion transport [Evidence IEA]; GO:0055085 - transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00148.1
GO:0016831 - carboxy-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014591.2
COORDINATES: similar to AA sequence:RefSeq:WP_018466482.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]; GO:0000312 - plastid small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF022782.2
COORDINATES: protein motif:HMM:NF012401.2
COORDINATES: protein motif:HMM:TIGR00050.1
COORDINATES: protein motif:HMM:NF014600.2
COORDINATES: protein motif:HMM:NF016149.2
COORDINATES: protein motif:HMM:TIGR04039.1
COORDINATES: protein motif:HMM:TIGR04052.1
metallo-mystery pair system four-Cys motif protein
COORDINATES: protein motif:HMM:NF017262.2
GO:0042597 - periplasmic space [Evidence IEA]
GO:0005507 - copper ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF022610.2
COORDINATES: protein motif:HMM:NF024515.2
COORDINATES: protein motif:HMM:TIGR02135.1
GO:0051049 - regulation of transport [Evidence IEA]
phosphate signaling complex protein PhoU
COORDINATES: similar to AA sequence:RefSeq:WP_013177161.1
COORDINATES: protein motif:HMM:NF015423.2
COORDINATES: protein motif:HMM:NF012512.2
COORDINATES: protein motif:HMM:NF013226.2
COORDINATES: protein motif:HMM:NF013799.2
COORDINATES: similar to AA sequence:RefSeq:WP_013178573.1
GO:0016853 - isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013507.2
COORDINATES: protein motif:HMM:NF006914.0
GO:0004591 - oxoglutarate dehydrogenase (succinyl-transferring) activity [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
2-oxoglutarate dehydrogenase E1 component
COORDINATES: similar to AA sequence:RefSeq:WP_000179874.1
GO:0045252 - oxoglutarate dehydrogenase complex [Evidence IEA]
GO:0004149 - dihydrolipoyllysine-residue succinyltransferase activity [Evidence IEA]
2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase
COORDINATES: protein motif:HMM:TIGR01350.1
GO:0004148 - dihydrolipoyl dehydrogenase activity [Evidence IEA]
GO:0045454 - cell redox homeostasis [Evidence IEA]; GO:0051068 - dihydrolipoamide metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF017944.2
COORDINATES: protein motif:HMM:NF004790.0
GO:0004851 - uroporphyrin-III C-methyltransferase activity [Evidence IEA]
GO:0019354 - siroheme biosynthetic process [Evidence IEA]
uroporphyrinogen-III C-methyltransferase
COORDINATES: protein motif:HMM:NF010029.0
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0004783 - sulfite reductase (NADPH) activity [Evidence IEA]
NADPH-dependent assimilatory sulfite reductase hemoprotein subunit
COORDINATES: protein motif:HMM:NF002537.0
GO:0003824 - catalytic activity [Evidence IEA]; GO:0004604 - phosphoadenylyl-sulfate reductase (thioredoxin) activity [Evidence IEA]
GO:0019379 - sulfate assimilation, phosphoadenylyl sulfate reduction by phosphoadenylyl-sulfate reductase (thioredoxin) [Evidence IEA]
GO:0016901 - oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor [Evidence IEA]; GO:0070968 - pyrroloquinoline quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013836.2
COORDINATES: protein motif:HMM:TIGR03700.1
COORDINATES: protein motif:HMM:NF014658.2
COORDINATES: protein motif:HMM:NF013909.2
COORDINATES: protein motif:HMM:NF013766.2
GO:0033744 - L-methionine:thioredoxin-disulfide S-oxidoreductase activity [Evidence IEA]; GO:0008113 - peptide-methionine (S)-S-oxide reductase activity [Evidence IEA]
peptide-methionine (S)-S-oxide reductase MsrA
COORDINATES: protein motif:HMM:TIGR01225.1
GO:0004397 - histidine ammonia-lyase activity [Evidence IEA]
GO:0006548 - histidine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019292.2
COORDINATES: protein motif:HMM:TIGR01224.1
GO:0050480 - imidazolonepropionase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012703.2
COORDINATES: protein motif:HMM:NF003820.0
GO:0016153 - urocanate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013757.2
IclR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF006183.0
GO:0017113 - dihydropyrimidine dehydrogenase (NADP+) activity [Evidence IEA]
GO:0006210 - thymine catabolic process [Evidence IEA]; GO:0006212 - uracil catabolic process [Evidence IEA]
NAD-dependent dihydropyrimidine dehydrogenase subunit PreA
COORDINATES: protein motif:HMM:TIGR02033.1
GO:0004157 - dihydropyrimidinase activity [Evidence IEA]
GO:0008152 - metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013179236.1
COORDINATES: protein motif:HMM:NF013080.2
COORDINATES: protein motif:HMM:NF021431.2
type II toxin-antitoxin system HigB family toxin
COORDINATES: protein motif:HMM:NF039734.1
COORDINATES: protein motif:HMM:NF018449.2
COORDINATES: protein motif:HMM:TIGR03858.1
GO:0010181 - FMN binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
LLM class flavin-dependent oxidoreductase
COORDINATES: similar to AA sequence:RefSeq:WP_013177785.1
COORDINATES: protein motif:HMM:NF005034.0
COORDINATES: protein motif:HMM:TIGR01891.1
COORDINATES: protein motif:HMM:NF013377.2
GO:0004555 - alpha,alpha-trehalase activity [Evidence IEA]
GO:0005991 - trehalose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02258.1
GO:0008664 - 2'-5'-RNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013561.2
COORDINATES: protein motif:HMM:NF013989.2
COORDINATES: protein motif:HMM:NF018663.2
COORDINATES: protein motif:HMM:NF024242.2
GO:0043565 - sequence-specific DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00228.1
GO:0008821 - crossover junction endodeoxyribonuclease activity [Evidence IEA]
crossover junction endodeoxyribonuclease RuvC
COORDINATES: similar to AA sequence:RefSeq:WP_008090340.1
GO:0004356 - glutamate-ammonia ligase activity [Evidence IEA]
GO:0006542 - glutamine biosynthetic process [Evidence IEA]
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]
GO:0140359 - ABC-type transporter activity [Evidence IEA]; GO:0015658 - branched-chain amino acid transmembrane transporter activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013801934.1
COORDINATES: protein motif:HMM:NF005154.0
GO:0004072 - aspartate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019095.2
COORDINATES: protein motif:HMM:NF004685.0
COORDINATES: protein motif:HMM:NF013308.2
GO:0050518 - 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity [Evidence IEA]
2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase
COORDINATES: protein motif:HMM:TIGR00154.1
GO:0050515 - 4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase activity [Evidence IEA]
4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol kinase
COORDINATES: protein motif:HMM:NF021758.2
COORDINATES: protein motif:HMM:NF002068.0
GO:0004160 - dihydroxy-acid dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008724.0
GO:0008108 - UDP-glucose:hexose-1-phosphate uridylyltransferase activity [Evidence IEA]
UDP-glucose--hexose-1-phosphate uridylyltransferase
COORDINATES: protein motif:HMM:NF012669.2
DeoR/GlpR family DNA-binding transcription regulator
COORDINATES: protein motif:HMM:TIGR01312.1
GO:0005515 - protein binding [Evidence IEA]; GO:0004856 - xylulokinase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]; GO:0005997 - xylulose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF019031.2
D-lyxose/D-mannose family sugar isomerase
ribbon-helix-helix domain-containing protein
COORDINATES: protein motif:HMM:NF016260.2
translocation/assembly module TamB domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_017869002.1
COORDINATES: protein motif:HMM:NF001376.0
indole-3-glycerol phosphate synthase TrpC
COORDINATES: protein motif:HMM:NF006073.0
COORDINATES: protein motif:HMM:NF017044.2
COORDINATES: protein motif:HMM:NF015684.2
COORDINATES: protein motif:HMM:NF019291.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
GO:0006304 - DNA modification [Evidence IEA]
Eco57I restriction-modification methylase domain-containing protein
GO:0003677 - DNA binding [Evidence IEA]; GO:0009036 - type II site-specific deoxyribonuclease activity [Evidence IEA]
GO:0009307 - DNA restriction-modification system [Evidence IEA]
PaeR7I family type II restriction endonuclease
COORDINATES: protein motif:HMM:TIGR00691.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005525 - GTP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0015970 - guanosine tetraphosphate biosynthetic process [Evidence IEA]
bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase
signal recognition particle sRNA small type
COORDINATES: nucleotide motif:Rfam:14.4:RF00169
COORDINATES: protein motif:HMM:NF014433.2
COORDINATES: protein motif:HMM:NF041419.1
COORDINATES: protein motif:HMM:NF014598.2
COORDINATES: protein motif:HMM:TIGR02103.1
GO:0051060 - pullulanase activity [Evidence IEA]
GO:0051678 - pullulan catabolic process [Evidence IEA]; GO:0005983 - starch catabolic process [Evidence IEA]
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF023249.2
COORDINATES: protein motif:HMM:NF015851.2
NrfD/PsrC family molybdoenzyme membrane anchor subunit
COORDINATES: protein motif:HMM:NF024247.2
TAT-variant-translocated molybdopterin oxidoreductase
COORDINATES: protein motif:HMM:NF025875.2
COORDINATES: protein motif:HMM:TIGR00057.1
GO:0061710 - L-threonylcarbamoyladenylate synthase [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003021871.1
GO:0009320 - phosphoribosylaminoimidazole carboxylase complex [Evidence IEA]
GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide mutase
COORDINATES: protein motif:HMM:NF004677.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004638 - phosphoribosylaminoimidazole carboxylase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]
5-(carboxyamino)imidazole ribonucleotide synthase
COORDINATES: similar to AA sequence:RefSeq:WP_000246374.1
COORDINATES: similar to AA sequence:RefSeq:WP_002006497.1
COORDINATES: similar to AA sequence:RefSeq:WP_018003270.1
GO:0003746 - translation elongation factor activity [Evidence IEA]
GO:0006414 - translational elongation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:YP_499102.1
COORDINATES: similar to AA sequence:RefSeq:WP_014268624.1
GO:0003723 - RNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000579825.1
COORDINATES: protein motif:HMM:TIGR03953.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015450970.1
COORDINATES: similar to AA sequence:RefSeq:WP_016293504.1
COORDINATES: similar to AA sequence:RefSeq:WP_011148791.1
COORDINATES: similar to AA sequence:RefSeq:WP_001148024.1
COORDINATES: protein motif:HMM:TIGR01009.1
COORDINATES: similar to AA sequence:RefSeq:WP_011530985.1
COORDINATES: protein motif:HMM:TIGR00012.1
COORDINATES: similar to AA sequence:RefSeq:WP_003022794.1
COORDINATES: similar to AA sequence:RefSeq:WP_007073026.1
COORDINATES: similar to AA sequence:RefSeq:WP_011921687.1
COORDINATES: similar to AA sequence:RefSeq:WP_018376779.1
COORDINATES: similar to AA sequence:RefSeq:WP_003948630.1
COORDINATES: similar to AA sequence:RefSeq:WP_013858092.1
COORDINATES: similar to AA sequence:RefSeq:WP_004738786.1
GO:0019843 - rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF013057.2
COORDINATES: similar to AA sequence:RefSeq:WP_016293490.1
COORDINATES: similar to AA sequence:RefSeq:WP_006998470.1
COORDINATES: similar to AA sequence:RefSeq:WP_004225266.1
COORDINATES: protein motif:HMM:TIGR00967.1
GO:0015450 - protein-transporting ATPase activity [Evidence IEA]
GO:0043952 - protein transport by the Sec complex [Evidence IEA]
COORDINATES: protein motif:HMM:NF011100.0
COORDINATES: protein motif:HMM:TIGR00500.1
GO:0036211 - protein modification process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003262224.1
GO:0003743 - translation initiation factor activity [Evidence IEA]
GO:0006413 - translational initiation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003720928.1
COORDINATES: similar to AA sequence:RefSeq:WP_009125149.1
GO:0022627 - cytosolic small ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004633577.1
COORDINATES: protein motif:HMM:NF003717.0
GO:0015935 - small ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003519.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
DNA-directed RNA polymerase subunit alpha
COORDINATES: similar to AA sequence:RefSeq:WP_017042856.1
GO:0022625 - cytosolic large ribosomal subunit [Evidence IEA]; GO:0005762 - mitochondrial large ribosomal subunit [Evidence IEA]
COORDINATES: protein motif:HMM:NF003766.0
GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0008973 - phosphopentomutase activity [Evidence IEA]
GO:0043094 - cellular metabolic compound salvage [Evidence IEA]; GO:0009117 - nucleotide metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017953234.1
COORDINATES: protein motif:HMM:TIGR02432.1
GO:0016879 - ligase activity, forming carbon-nitrogen bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF010147.0
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
iron-sulfur cluster insertion protein ErpA
COORDINATES: protein motif:HMM:NF003346.0
GO:0004375 - glycine dehydrogenase (decarboxylating) activity [Evidence IEA]
GO:0006546 - glycine catabolic process [Evidence IEA]
aminomethyl-transferring glycine dehydrogenase subunit GcvPB
COORDINATES: protein motif:HMM:NF001696.0
aminomethyl-transferring glycine dehydrogenase subunit GcvPA
COORDINATES: similar to AA sequence:RefSeq:WP_005123344.1
GO:0019464 - glycine decarboxylation via glycine cleavage system [Evidence IEA]
COORDINATES: protein motif:HMM:NF001567.0
GO:0004047 - aminomethyltransferase activity [Evidence IEA]
glycine cleavage system aminomethyltransferase GcvT
COORDINATES: protein motif:HMM:NF012255.2
COORDINATES: protein motif:HMM:NF024273.2
COORDINATES: protein motif:HMM:TIGR00244.1
GO:0140110 - transcription regulator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012334.2
COORDINATES: protein motif:HMM:TIGR00515.1
GO:0009317 - acetyl-CoA carboxylase complex [Evidence IEA]
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]
GO:0006633 - fatty acid biosynthetic process [Evidence IEA]
acetyl-CoA carboxylase, carboxyltransferase subunit beta
COORDINATES: protein motif:HMM:TIGR00513.1
acetyl-CoA carboxylase carboxyltransferase subunit alpha
COORDINATES: protein motif:HMM:TIGR01163.1
GO:0004750 - D-ribulose-phosphate 3-epimerase activity [Evidence IEA]
GO:0006098 - pentose-phosphate shunt [Evidence IEA]
COORDINATES: protein motif:HMM:NF012790.2
GO:0016783 - sulfurtransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014173.2
COORDINATES: protein motif:HMM:NF012517.2
GO:0016705 - oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen [Evidence IEA]
COORDINATES: protein motif:HMM:NF024816.2
COORDINATES: protein motif:HMM:NF015541.2
GO:0004806 - triglyceride lipase activity [Evidence IEA]
GO:0016042 - lipid catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF016340.2
GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
RsmB/NOP family class I SAM-dependent RNA methyltransferase
COORDINATES: protein motif:HMM:TIGR00619.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: protein motif:HMM:TIGR01292.1
GO:0004791 - thioredoxin-disulfide reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013862.2
GO:0006629 - lipid metabolic process [Evidence IEA]
patatin-like phospholipase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_014685598.1
COORDINATES: protein motif:HMM:NF001810.0
COORDINATES: protein motif:HMM:TIGR00531.1
acetyl-CoA carboxylase biotin carboxyl carrier protein
COORDINATES: protein motif:HMM:NF006367.0
GO:0003989 - acetyl-CoA carboxylase activity [Evidence IEA]; GO:0004075 - biotin carboxylase activity [Evidence IEA]
acetyl-CoA carboxylase biotin carboxylase subunit
COORDINATES: protein motif:HMM:TIGR01951.1
COORDINATES: protein motif:HMM:NF010770.0
bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase
COORDINATES: protein motif:HMM:NF013227.2
GO:0008483 - transaminase activity [Evidence IEA]
DegT/DnrJ/EryC1/StrS family aminotransferase
COORDINATES: protein motif:HMM:NF014069.2
COORDINATES: protein motif:HMM:NF008675.0
COORDINATES: protein motif:HMM:NF012472.2
COORDINATES: protein motif:HMM:NF014566.2
GO:0071586 - CAAX-box protein processing [Evidence IEA]
CPBP family intramembrane metalloprotease
COORDINATES: similar to AA sequence:RefSeq:WP_013179157.1
glutathione ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF016354.2
COORDINATES: protein motif:HMM:NF013231.2
COORDINATES: protein motif:HMM:NF019301.2
COORDINATES: protein motif:HMM:NF013098.2
COORDINATES: protein motif:HMM:NF013046.2
COORDINATES: protein motif:HMM:NF014630.2
C4-type zinc ribbon domain-containing protein
COORDINATES: protein motif:HMM:NF036525.2
COORDINATES: protein motif:HMM:NF010350.0
GO:0097266 - phenylacetyl-CoA 1,2-epoxidase activity [Evidence IEA]
GO:0010124 - phenylacetate catabolic process [Evidence IEA]
1,2-phenylacetyl-CoA epoxidase subunit PaaA
COORDINATES: protein motif:HMM:NF018002.2
COORDINATES: protein motif:HMM:NF016993.2
1,2-phenylacetyl-CoA epoxidase subunit PaaC
COORDINATES: protein motif:HMM:TIGR02159.1
1,2-phenylacetyl-CoA epoxidase subunit PaaD
COORDINATES: protein motif:HMM:NF013740.2
GO:0015562 - efflux transmembrane transporter activity [Evidence IEA]
GO:1905887 - autoinducer AI-2 transmembrane transport [Evidence IEA]
GO:0015891 - siderophore transport [Evidence IEA]
iron-siderophore ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF025252.2
COORDINATES: protein motif:HMM:NF013077.2
COORDINATES: protein motif:HMM:NF018677.2
COORDINATES: protein motif:HMM:NF013584.2
COORDINATES: protein motif:HMM:TIGR02436.1
COORDINATES: protein motif:HMM:NF014717.2
COORDINATES: protein motif:HMM:NF028441.2
GO:0009279 - cell outer membrane [Evidence IEA]
GO:0044874 - lipoprotein localization to outer membrane [Evidence IEA]; GO:0042953 - lipoprotein transport [Evidence IEA]
outer membrane lipoprotein-sorting protein
COORDINATES: protein motif:HMM:NF024748.2
COORDINATES: protein motif:HMM:NF013069.2
COORDINATES: protein motif:HMM:NF024829.2
HlyD family efflux transporter periplasmic adaptor subunit
COORDINATES: protein motif:HMM:NF014385.2
COORDINATES: protein motif:HMM:NF015254.2
COORDINATES: protein motif:HMM:NF021981.2
GO:0009306 - protein secretion [Evidence IEA]; GO:0006465 - signal peptide processing [Evidence IEA]
COORDINATES: protein motif:HMM:NF012318.2
trypsin-like peptidase domain-containing protein
COORDINATES: protein motif:HMM:NF015951.2
COORDINATES: protein motif:HMM:NF022137.2
class I SAM-dependent rRNA methyltransferase
COORDINATES: protein motif:HMM:NF023041.2
COORDINATES: protein motif:HMM:NF024134.2
COORDINATES: protein motif:HMM:TIGR00450.1
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
COORDINATES: protein motif:HMM:NF000818.0
GO:0042286 - glutamate-1-semialdehyde 2,1-aminomutase activity [Evidence IEA]
glutamate-1-semialdehyde 2,1-aminomutase
COORDINATES: protein motif:HMM:NF016358.2
Swt1 family HEPN domain-containing protein
COORDINATES: protein motif:HMM:NF018357.2
COORDINATES: protein motif:HMM:NF021634.2
COORDINATES: protein motif:HMM:NF012403.2
COORDINATES: protein motif:HMM:NF014705.2
COORDINATES: similar to AA sequence:RefSeq:WP_013178520.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178519.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178518.1
maltose ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR01879.1
COORDINATES: protein motif:HMM:NF014522.2
GO:0007155 - cell adhesion [Evidence IEA]
COORDINATES: protein motif:HMM:NF012675.2
COORDINATES: protein motif:HMM:NF013382.2
COORDINATES: protein motif:HMM:NF013314.2
BTAD domain-containing putative transcriptional regulator
COORDINATES: protein motif:HMM:NF039835.1
COORDINATES: protein motif:HMM:TIGR00168.2
COORDINATES: protein motif:HMM:TIGR00001.1
COORDINATES: similar to AA sequence:RefSeq:WP_005786577.1
COORDINATES: protein motif:HMM:NF021466.2
COORDINATES: protein motif:HMM:TIGR00216.1
GO:0051745 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0046677 - response to antibiotic [Evidence IEA]; GO:0015968 - stringent response [Evidence IEA]
4-hydroxy-3-methylbut-2-enyl diphosphate reductase
COORDINATES: protein motif:HMM:NF006941.0
GO:0030554 - adenyl nucleotide binding [Evidence IEA]; GO:0008888 - glycerol dehydrogenase [NAD+] activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013296.2
GO:0016832 - aldehyde-lyase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04382.1
GO:0047590 - 5-dehydro-2-deoxygluconokinase activity [Evidence IEA]
GO:0019310 - inositol catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024118.2
COORDINATES: protein motif:HMM:TIGR01722.1
GO:0102662 - malonate-semialdehyde dehydrogenase (acetylating, NAD+) activity [Evidence IEA]
CoA-acylating methylmalonate-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF016826.2
GO:0016861 - intramolecular oxidoreductase activity, interconverting aldoses and ketoses [Evidence IEA]
COORDINATES: protein motif:HMM:NF022172.2
COORDINATES: protein motif:HMM:TIGR04380.1
GO:0050112 - inositol 2-dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04377.1
GO:0016823 - hydrolase activity, acting on acid carbon-carbon bonds, in ketonic substances [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030976 - thiamine pyrophosphate binding [Evidence IEA]
3D-(3,5/4)-trihydroxycyclohexane-1,2-dione acylhydrolase (decyclizing)
sugar ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF021516.2
rhodanese-like domain-containing protein
COORDINATES: protein motif:HMM:NF012696.2
COORDINATES: protein motif:HMM:TIGR00815.1
GO:0015116 - sulfate transmembrane transporter activity [Evidence IEA]
GO:0008272 - sulfate transport [Evidence IEA]
GO:0000166 - nucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF019464.2
COORDINATES: protein motif:HMM:TIGR02634.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009897 - external side of plasma membrane [Evidence IEA]; GO:0030288 - outer membrane-bounded periplasmic space [Evidence IEA]
GO:0015614 - ABC-type D-xylose transporter activity [Evidence IEA]; GO:0033222 - xylose binding [Evidence IEA]
GO:0015753 - D-xylose transmembrane transport [Evidence IEA]
D-xylose ABC transporter substrate-binding protein
COORDINATES: similar to AA sequence:RefSeq:WP_013177176.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178007.1
COORDINATES: similar to AA sequence:RefSeq:WP_018287377.1
COORDINATES: protein motif:HMM:NF001913.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003824 - catalytic activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
ADP-forming succinate--CoA ligase subunit beta
COORDINATES: protein motif:HMM:NF016213.2
COORDINATES: protein motif:HMM:NF000784.0
GO:0008961 - phosphatidylglycerol-prolipoprotein diacylglyceryl transferase activity [Evidence IEA]
GO:0009249 - protein lipoylation [Evidence IEA]
prolipoprotein diacylglyceryl transferase
NTP transferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013178770.1
COORDINATES: similar to AA sequence:RefSeq:WP_012053752.1
GO:0005951 - carbamoyl-phosphate synthase complex [Evidence IEA]
GO:0004088 - carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity [Evidence IEA]
glutamine-hydrolyzing carbamoyl-phosphate synthase small subunit
COORDINATES: similar to AA sequence:RefSeq:WP_013177762.1
COORDINATES: protein motif:HMM:NF024758.2
COORDINATES: protein motif:HMM:NF025473.2
COORDINATES: similar to AA sequence:RefSeq:WP_002324241.1
GO:0004045 - aminoacyl-tRNA hydrolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF020473.2
COORDINATES: protein motif:HMM:NF015146.2
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01859.1
GO:0004332 - fructose-bisphosphate aldolase activity [Evidence IEA]
class II fructose-1,6-bisphosphate aldolase
COORDINATES: protein motif:HMM:TIGR03664.1
COORDINATES: protein motif:HMM:TIGR00064.1
GO:0003924 - GTPase activity [Evidence IEA]; GO:0005047 - signal recognition particle binding [Evidence IEA]
signal recognition particle-docking protein FtsY
COORDINATES: protein motif:HMM:TIGR00464.1
GO:0009332 - glutamate-tRNA ligase complex [Evidence IEA]
GO:0004818 - glutamate-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001392.0
GO:0016311 - dephosphorylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004695095.1
COORDINATES: similar to AA sequence:RefSeq:WP_009305940.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177445.1
FAD-linked oxidase C-terminal domain-containing protein
GO:0008448 - N-acetylglucosamine-6-phosphate deacetylase activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]
N-acetylglucosamine-6-phosphate deacetylase
COORDINATES: protein motif:HMM:NF015509.2
COORDINATES: protein motif:HMM:NF024136.2
ABC-F family ATP-binding cassette domain-containing protein
COORDINATES: protein motif:HMM:NF016162.2
COORDINATES: protein motif:HMM:NF013071.2
COORDINATES: protein motif:HMM:NF021509.2
COORDINATES: protein motif:HMM:NF024952.2
COORDINATES: protein motif:HMM:NF012770.2
COORDINATES: similar to AA sequence:RefSeq:WP_016291381.1
COORDINATES: protein motif:HMM:NF019575.2
COORDINATES: protein motif:HMM:TIGR00281.1
GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013775.2
GO:0016310 - phosphorylation [Evidence IEA]
aminoglycoside phosphotransferase family protein
COORDINATES: protein motif:HMM:NF019498.2
COORDINATES: protein motif:HMM:NF013756.2
GO:0010181 - FMN binding [Evidence IEA]; GO:0016646 - oxidoreductase activity, acting on the CH-NH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF025217.2
COORDINATES: protein motif:HMM:NF003807.0
GO:0003855 - 3-dehydroquinate dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01357.1
GO:0003856 - 3-dehydroquinate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF010554.0
COORDINATES: protein motif:HMM:TIGR00033.1
GO:0004107 - chorismate synthase activity [Evidence IEA]
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012485.2
secretin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF016253.2
GO:0043683 - type IV pilus assembly [Evidence IEA]; GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF037069.2
COORDINATES: protein motif:HMM:TIGR01175.1
GO:0009297 - pilus assembly [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01241.2
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
GO:0051301 - cell division [Evidence IEA]; GO:0006508 - proteolysis [Evidence IEA]
COORDINATES: protein motif:HMM:NF004384.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]
GO:0008654 - phospholipid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001790.0
50S ribosomal protein L11 methyltransferase
COORDINATES: protein motif:HMM:NF008706.0
16S rRNA (uracil(1498)-N(3))-methyltransferase
COORDINATES: protein motif:HMM:NF009583.0
GO:0031522 - cell envelope Sec protein transport complex [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00487.1
COORDINATES: protein motif:HMM:NF016204.2
COORDINATES: protein motif:HMM:TIGR01953.1
GO:0006353 - DNA-templated transcription termination [Evidence IEA]
COORDINATES: protein motif:HMM:NF011239.0
aminotransferase class V-fold PLP-dependent enzyme
COORDINATES: protein motif:HMM:TIGR00468.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]; GO:0000049 - tRNA binding [Evidence IEA]
GO:0006432 - phenylalanyl-tRNA aminoacylation [Evidence IEA]
phenylalanine--tRNA ligase subunit alpha
COORDINATES: protein motif:HMM:TIGR00472.1
GO:0009328 - phenylalanine-tRNA ligase complex [Evidence IEA]
GO:0004826 - phenylalanine-tRNA ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001484.0
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: protein motif:HMM:NF013013.2
GO:0004399 - histidinol dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014724.2
COORDINATES: protein motif:HMM:NF014305.2
COORDINATES: protein motif:HMM:TIGR00225.1
COORDINATES: protein motif:HMM:TIGR00224.1
GO:0004612 - phosphoenolpyruvate carboxykinase (ATP) activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:NF012692.2
COORDINATES: protein motif:HMM:NF024061.2
COORDINATES: protein motif:HMM:NF012596.2
COORDINATES: protein motif:HMM:NF001221.0
GO:0004350 - glutamate-5-semialdehyde dehydrogenase activity [Evidence IEA]; GO:0016620 - oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016293117.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF016382.2
COORDINATES: protein motif:HMM:NF015791.2
COORDINATES: protein motif:HMM:NF001030.0
YebC/PmpR family DNA-binding transcriptional regulator
COORDINATES: protein motif:HMM:TIGR00696.1
GO:0043163 - cell envelope organization [Evidence IEA]
WecB/TagA/CpsF family glycosyltransferase
COORDINATES: protein motif:HMM:NF015962.2
COORDINATES: protein motif:HMM:TIGR03998.1
GO:0071793 - bacillithiol biosynthetic process [Evidence IEA]
bacillithiol biosynthesis cysteine-adding enzyme BshC
COORDINATES: similar to AA sequence:RefSeq:WP_016291787.1
GO:0003938 - IMP dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024675.2
COORDINATES: protein motif:HMM:TIGR00082.1
GO:0019843 - rRNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01084.1
GO:0004844 - uracil DNA N-glycosylase activity [Evidence IEA]
GO:0006310 - DNA recombination [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF017868.2
gamma-glutamylcyclotransferase family protein
COORDINATES: protein motif:HMM:TIGR02146.1
COORDINATES: protein motif:HMM:TIGR02086.1
3-isopropylmalate dehydratase large subunit
COORDINATES: protein motif:HMM:NF010629.0
catalyzes the formation of homoisocitrate from cis-homoaconitate; Derived by automated computational analysis using gene prediction method: Protein Homology.
3-isopropylmalate dehydratase small subunit
COORDINATES: protein motif:HMM:TIGR01206.1
GO:0019878 - lysine biosynthetic process via aminoadipic acid [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02144.1
COORDINATES: protein motif:HMM:TIGR00028.1
COORDINATES: similar to AA sequence:RefSeq:NP_217387.1
type II toxin-antitoxin system VapB family antitoxin
COORDINATES: protein motif:HMM:NF004801.0
COORDINATES: protein motif:HMM:NF010659.0
COORDINATES: protein motif:HMM:TIGR00707.1
acetylornithine/succinylornithine family transaminase
COORDINATES: protein motif:HMM:NF003367.0
GO:0070403 - NAD+ binding [Evidence IEA]
GO:0006631 - fatty acid metabolic process [Evidence IEA]
3-hydroxyacyl-CoA dehydrogenase NAD-binding domain-containing protein
COORDINATES: protein motif:HMM:NF006070.0
COORDINATES: similar to AA sequence:RefSeq:WP_016292150.1
COORDINATES: similar to AA sequence:RefSeq:WP_006235210.1
COORDINATES: protein motif:HMM:NF005914.0
COORDINATES: protein motif:HMM:TIGR01230.1
GO:0008783 - agmatinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013224.2
Lrp/AsnC family transcriptional regulator
PLP-dependent aminotransferase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013176574.1
COORDINATES: protein motif:HMM:TIGR02456.1
GO:0047471 - maltose alpha-D-glucosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF023324.2
alpha-1,4-glucan--maltose-1-phosphate maltosyltransferase
COORDINATES: protein motif:HMM:NF024989.2
COORDINATES: protein motif:HMM:NF039408.1
COORDINATES: protein motif:HMM:NF014906.2
TetR/AcrR family transcriptional regulator C-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF021873.2
COORDINATES: protein motif:HMM:NF025088.2
COORDINATES: similar to AA sequence:RefSeq:WP_005936145.1
COORDINATES: protein motif:HMM:TIGR02607.1
COORDINATES: protein motif:HMM:NF022279.2
COORDINATES: protein motif:HMM:TIGR00654.1
PhzF family phenazine biosynthesis protein
COORDINATES: protein motif:HMM:TIGR00093.1
COORDINATES: similar to AA sequence:RefSeq:WP_016292428.1
GO:0006166 - purine ribonucleoside salvage [Evidence IEA]
COORDINATES: protein motif:HMM:NF013700.2
COORDINATES: protein motif:HMM:NF015149.2
GO:0006011 - UDP-glucose metabolic process [Evidence IEA]
cellulose biosynthesis cyclic di-GMP-binding regulatory protein BcsB
COORDINATES: protein motif:HMM:NF012377.2
COORDINATES: protein motif:HMM:NF021214.2
COORDINATES: protein motif:HMM:TIGR01894.1
type III-B CRISPR module RAMP protein Cmr1
COORDINATES: protein motif:HMM:TIGR02577.1
type III-B CRISPR-associated protein Cas10/Cmr2
COORDINATES: protein motif:HMM:NF021236.2
GO:0005575 - cellular_component [Evidence IEA]
type III-B CRISPR module-associated protein Cmr3
COORDINATES: protein motif:HMM:TIGR02580.1
type III-B CRISPR module RAMP protein Cmr4
COORDINATES: protein motif:HMM:TIGR01881.1
type III-B CRISPR module-associated protein Cmr5
COORDINATES: protein motif:HMM:TIGR01898.1
type III-B CRISPR module RAMP protein Cmr6
COORDINATES: protein motif:HMM:TIGR00233.1
GO:0004830 - tryptophan-tRNA ligase activity [Evidence IEA]
GO:0006436 - tryptophanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013811.2
COORDINATES: protein motif:HMM:TIGR01367.1
GO:0004588 - orotate phosphoribosyltransferase activity [Evidence IEA]
apoptosis inducing factor family protein
COORDINATES: protein motif:HMM:TIGR00277.1
COORDINATES: protein motif:HMM:TIGR01499.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008841 - dihydrofolate synthase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0004326 - tetrahydrofolylpolyglutamate synthase activity [Evidence IEA]
folylpolyglutamate synthase/dihydrofolate synthase family protein
COORDINATES: protein motif:HMM:TIGR01496.1
GO:0004156 - dihydropteroate synthase activity [Evidence IEA]
GO:0009396 - folic acid-containing compound biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014233.2
GO:0004150 - dihydroneopterin aldolase activity [Evidence IEA]
GO:0006760 - folic acid-containing compound metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01498.1
GO:0003848 - 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase activity [Evidence IEA]
2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase
COORDINATES: protein motif:HMM:NF021486.2
COORDINATES: protein motif:HMM:NF023428.2
replication-associated recombination protein A
COORDINATES: protein motif:HMM:TIGR00016.1
GO:0008776 - acetate kinase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]
GO:0006085 - acetyl-CoA biosynthetic process [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF025601.2
COORDINATES: protein motif:HMM:NF024135.2
COORDINATES: protein motif:HMM:NF024109.2
COORDINATES: protein motif:HMM:TIGR01460.1
COORDINATES: protein motif:HMM:NF040907.1
COORDINATES: protein motif:HMM:NF040905.1
COORDINATES: protein motif:HMM:NF040906.2
COORDINATES: protein motif:HMM:NF005123.0
COORDINATES: similar to AA sequence:RefSeq:WP_016292992.1
GO:0008733 - L-arabinose isomerase activity [Evidence IEA]
GO:0005996 - monosaccharide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024583.2
GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]; GO:0046983 - protein dimerization activity [Evidence IEA]
GO:0016208 - AMP binding [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF024834.2
COORDINATES: protein motif:HMM:NF012343.2
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]; GO:0020037 - heme binding [Evidence IEA]
GO:0009060 - aerobic respiration [Evidence IEA]
cbb3-type cytochrome c oxidase subunit I
COORDINATES: protein motif:HMM:NF012607.2
GO:0008720 - D-lactate dehydrogenase activity [Evidence IEA]; GO:0070404 - NADH binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014683.2
GO:0015129 - lactate transmembrane transporter activity [Evidence IEA]
GO:0015727 - lactate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF014796.2
COORDINATES: protein motif:HMM:NF020907.2
GO:0019628 - urate catabolic process [Evidence IEA]
2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase
COORDINATES: protein motif:HMM:TIGR03383.1
GO:0004846 - urate oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02962.1
COORDINATES: protein motif:HMM:TIGR03178.1
GO:0004038 - allantoinase activity [Evidence IEA]; GO:0050897 - cobalt ion binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0000256 - allantoin catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03214.2
GO:0071522 - ureidoglycine aminohydrolase activity [Evidence IEA]
GO:0010136 - ureide catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF006771.0
COORDINATES: protein motif:HMM:NF013964.2
COORDINATES: protein motif:HMM:NF013885.2
COORDINATES: protein motif:HMM:NF013134.2
COORDINATES: protein motif:HMM:TIGR02965.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]; GO:0004854 - xanthine dehydrogenase activity [Evidence IEA]
GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase molybdopterin binding subunit
COORDINATES: protein motif:HMM:TIGR02964.1
GO:0043546 - molybdopterin cofactor binding [Evidence IEA]
GO:0065003 - protein-containing complex assembly [Evidence IEA]; GO:0009115 - xanthine catabolic process [Evidence IEA]
xanthine dehydrogenase accessory protein XdhC
COORDINATES: protein motif:HMM:NF016777.2
COORDINATES: protein motif:HMM:NF015734.2
GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0120225 - coenzyme A binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013177748.1
COORDINATES: protein motif:HMM:NF017085.2
COORDINATES: protein motif:HMM:NF006765.0
GO:0004616 - phosphogluconate dehydrogenase (decarboxylating) activity [Evidence IEA]
decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF003814.0
GO:0017168 - 5-oxoprolinase (ATP-hydrolyzing) activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016810 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF014663.2
carboxyltransferase domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013179081.1
COORDINATES: protein motif:HMM:NF024921.2
iron ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF017426.2
COORDINATES: protein motif:HMM:NF006940.0
COORDINATES: protein motif:HMM:NF013442.2
GO:0004474 - malate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF011645.0
GO:0004451 - isocitrate lyase activity [Evidence IEA]
GO:0019752 - carboxylic acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00121.1
GO:0004077 - biotin-[acetyl-CoA-carboxylase] ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02168.1
GO:0030261 - chromosome condensation [Evidence IEA]; GO:0007059 - chromosome segregation [Evidence IEA]
COORDINATES: protein motif:HMM:NF017183.2
COORDINATES: protein motif:HMM:NF025684.2
COORDINATES: protein motif:HMM:NF012415.2
COORDINATES: protein motif:HMM:TIGR01134.1
GO:0004044 - amidophosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01736.1
GO:0004642 - phosphoribosylformylglycinamidine synthase activity [Evidence IEA]
phosphoribosylformylglycinamidine synthase subunit PurL
COORDINATES: protein motif:HMM:NF002957.0
phosphoribosylformylglycinamidine synthase subunit PurQ
pyridoxal phosphate-dependent aminotransferase family protein
COORDINATES: protein motif:HMM:NF016228.2
NAD-dependent epimerase/dehydratase family protein
COORDINATES: protein motif:HMM:NF016027.2
GO:0016758 - hexosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00031.1
GO:0008767 - UDP-galactopyranose mutase activity [Evidence IEA]
GO:0009273 - peptidoglycan-based cell wall biogenesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00374.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177260.1
COORDINATES: protein motif:HMM:NF015155.2
COORDINATES: protein motif:HMM:NF013714.2
GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01186.1
COORDINATES: protein motif:HMM:NF015995.2
enoyl-CoA hydratase/isomerase family protein
COORDINATES: protein motif:HMM:NF002528.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008716 - D-alanine-D-alanine ligase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
D-alanine--D-alanine ligase family protein
COORDINATES: protein motif:HMM:NF025637.2
COORDINATES: protein motif:HMM:NF014584.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01734
Fluoride riboswitches increase expression of downstream genes that help mitigate the toxic effects of very high levels of fluoride; They are found in a wide variety of bacteria and archaea; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:TIGR01525.1
GO:0042625 - ATPase-coupled ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF033788.1
COORDINATES: protein motif:HMM:NF013804.2
COORDINATES: protein motif:HMM:TIGR00595.1
GO:0005658 - alpha DNA polymerase:primase complex [Evidence IEA]
GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0003688 - DNA replication origin binding [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00878.1
GO:0004641 - phosphoribosylformylglycinamidine cyclo-ligase activity [Evidence IEA]
GO:0006189 - 'de novo' IMP biosynthetic process [Evidence IEA]; GO:0009152 - purine ribonucleotide biosynthetic process [Evidence IEA]
phosphoribosylformylglycinamidine cyclo-ligase
COORDINATES: similar to AA sequence:RefSeq:WP_003640300.1
COORDINATES: protein motif:HMM:NF002606.0
COORDINATES: protein motif:HMM:NF021098.2
COORDINATES: protein motif:HMM:NF005932.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003911 - DNA ligase (NAD+) activity [Evidence IEA]
GO:0006281 - DNA repair [Evidence IEA]; GO:0006260 - DNA replication [Evidence IEA]
COORDINATES: protein motif:HMM:NF014647.2
BMP family ABC transporter substrate-binding protein
COORDINATES: nucleotide motif:Rfam:14.4:RF00010
COORDINATES: protein motif:HMM:TIGR00242.1
GO:0051302 - regulation of cell division [Evidence IEA]
division/cell wall cluster transcriptional repressor MraZ
COORDINATES: protein motif:HMM:NF013919.2
GO:0016434 - rRNA (cytosine) methyltransferase activity [Evidence IEA]
16S rRNA (cytosine(1402)-N(4))-methyltransferase RsmH
COORDINATES: protein motif:HMM:NF013100.2
GO:0008658 - penicillin binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01143.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0047480 - UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008963 - phospho-N-acetylmuramoyl-pentapeptide-transferase activity [Evidence IEA]
phospho-N-acetylmuramoyl-pentapeptide- transferase
COORDINATES: protein motif:HMM:TIGR01087.1
GO:0008764 - UDP-N-acetylmuramoylalanine-D-glutamate ligase activity [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanine--D-glutamate ligase
COORDINATES: protein motif:HMM:NF013279.2
GO:0051301 - cell division [Evidence IEA]
FtsW/RodA/SpoVE family cell cycle protein
COORDINATES: protein motif:HMM:TIGR01133.1
GO:0050511 - undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase activity [Evidence IEA]
undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase
COORDINATES: protein motif:HMM:TIGR01082.1
GO:0008763 - UDP-N-acetylmuramate-L-alanine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00179.1
COORDINATES: protein motif:HMM:NF020067.2
FtsQ-type POTRA domain-containing protein
COORDINATES: protein motif:HMM:TIGR01174.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
GO:0043093 - FtsZ-dependent cytokinesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00065.1
COORDINATES: protein motif:HMM:TIGR00083.1
GO:0003919 - FMN adenylyltransferase activity [Evidence IEA]
GO:0006747 - FAD biosynthetic process [Evidence IEA]; GO:0009398 - FMN biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00186.1
GO:0008173 - RNA methyltransferase activity [Evidence IEA]
GO:0009451 - RNA modification [Evidence IEA]
23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB
COORDINATES: protein motif:HMM:NF012546.2
COORDINATES: protein motif:HMM:NF015527.2
GO:0008146 - sulfotransferase activity [Evidence IEA]
sulfotransferase family 2 domain-containing protein
COORDINATES: protein motif:HMM:TIGR00149.1
secondary thiamine-phosphate synthase enzyme YjbQ
COORDINATES: protein motif:HMM:TIGR00554.2
GO:0004594 - pantothenate kinase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_004933502.1
COORDINATES: similar to AA sequence:RefSeq:WP_009567342.1
GO:0004654 - polyribonucleotide nucleotidyltransferase activity [Evidence IEA]
GO:0006402 - mRNA catabolic process [Evidence IEA]
polyribonucleotide nucleotidyltransferase
COORDINATES: protein motif:HMM:TIGR00649.1
GO:0004540 - ribonuclease activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016291710.1
COORDINATES: protein motif:HMM:NF024803.2
COORDINATES: protein motif:HMM:NF006673.0
COORDINATES: protein motif:HMM:NF016143.2
GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF015971.2
COORDINATES: protein motif:HMM:TIGR00418.1
GO:0004829 - threonine-tRNA ligase activity [Evidence IEA]
GO:0006435 - threonyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF020133.2
COORDINATES: protein motif:HMM:NF021507.2
phosphodiester glycosidase family protein
COORDINATES: protein motif:HMM:NF013378.2
COORDINATES: protein motif:HMM:TIGR00435.1
GO:0004817 - cysteine-tRNA ligase activity [Evidence IEA]
GO:0006423 - cysteinyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00732.1
GO:0009294 - DNA-mediated transformation [Evidence IEA]
COORDINATES: protein motif:HMM:NF008051.0
GO:0004558 - alpha-1,4-glucosidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016115.2
GO:0016812 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_018287374.1
COORDINATES: protein motif:HMM:NF039977.1
COORDINATES: protein motif:HMM:NF013927.2
GO:0016811 - hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01596.1
COORDINATES: protein motif:HMM:TIGR01876.1
type I-C CRISPR-associated protein Cas5c
COORDINATES: protein motif:HMM:TIGR01863.1
type I-C CRISPR-associated protein Cas8c/Csd1
COORDINATES: protein motif:HMM:TIGR02589.1
type I-C CRISPR-associated protein Cas7/Csd2
COORDINATES: protein motif:HMM:NF015728.2
COORDINATES: protein motif:HMM:NF021006.2
TIGR02221 family CRISPR-associated protein
COORDINATES: protein motif:HMM:TIGR02619.1
COORDINATES: protein motif:HMM:TIGR00372.1
COORDINATES: protein motif:HMM:TIGR03640.1
GO:0004519 - endonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
GO:0051607 - defense response to virus [Evidence IEA]; GO:0043571 - maintenance of CRISPR repeat elements [Evidence IEA]
type I-C CRISPR-associated endonuclease Cas1c
COORDINATES: protein motif:HMM:TIGR01573.1
COORDINATES: protein motif:HMM:NF012804.2
class II aldolase/adducin family protein
COORDINATES: protein motif:HMM:NF014012.2
COORDINATES: similar to AA sequence:RefSeq:WP_013178235.1
GO:0015075 - monoatomic ion transmembrane transporter activity [Evidence IEA]
GO:0034220 - monoatomic ion transmembrane transport [Evidence IEA]
monovalent cation/H+ antiporter complex subunit F
COORDINATES: protein motif:HMM:TIGR01300.1
GO:0051139 - metal cation:proton antiporter activity [Evidence IEA]
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]; GO:1902600 - proton transmembrane transport [Evidence IEA]
monovalent cation/H(+) antiporter subunit G
COORDINATES: similar to AA sequence:RefSeq:WP_013178233.1
COORDINATES: protein motif:HMM:NF015970.2
COORDINATES: similar to AA sequence:RefSeq:WP_013178231.1
COORDINATES: protein motif:HMM:NF012581.2
proton-conducting transporter membrane subunit
COORDINATES: protein motif:HMM:NF015232.2
COORDINATES: protein motif:HMM:NF013232.2
COORDINATES: protein motif:HMM:NF005875.0
GO:0070403 - NAD+ binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF018024.2
adenine deaminase C-terminal domain-containing protein
COORDINATES: protein motif:HMM:TIGR03594.1
GO:0005525 - GTP binding [Evidence IEA]; GO:0003924 - GTPase activity [Evidence IEA]; GO:0043022 - ribosome binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00460.1
GO:0004479 - methionyl-tRNA formyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001159.1
COORDINATES: protein motif:HMM:NF019561.2
COORDINATES: protein motif:HMM:TIGR00159.1
GO:0004016 - adenylate cyclase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013178190.1
GO:0003747 - translation release factor activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013117.2
GO:0008381 - mechanosensitive monoatomic ion channel activity [Evidence IEA]
mechanosensitive ion channel family protein
COORDINATES: protein motif:HMM:NF024622.2
COORDINATES: protein motif:HMM:NF013720.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036474.1
COORDINATES: protein motif:HMM:TIGR00640.1
cobalamin B12-binding domain-containing protein
GO:0016773 - phosphotransferase activity, alcohol group as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00135.1
Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC
COORDINATES: protein motif:HMM:TIGR00414.1
GO:0004828 - serine-tRNA ligase activity [Evidence IEA]
GO:0006434 - seryl-tRNA aminoacylation [Evidence IEA]
GO:0016627 - oxidoreductase activity, acting on the CH-CH group of donors [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01796.1
GO:0004106 - chorismate mutase activity [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00059
TPP riboswitch; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF014502.2
COORDINATES: protein motif:HMM:NF013706.2
GO:0003824 - catalytic activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]
fumarylacetoacetate hydrolase family protein
COORDINATES: protein motif:HMM:NF013239.2
COORDINATES: similar to AA sequence:RefSeq:WP_013178169.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178168.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178166.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178164.1
COORDINATES: protein motif:HMM:NF001770.0
GO:0004055 - argininosuccinate synthase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00838.1
GO:0004056 - argininosuccinate lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005840.0
GO:0009975 - cyclase activity [Evidence IEA]
GO:0009966 - regulation of signal transduction [Evidence IEA]
COORDINATES: protein motif:HMM:NF006998.0
GO:0004067 - asparaginase activity [Evidence IEA]
GO:0006520 - amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013360.2
GO:0005507 - copper ion binding [Evidence IEA]; GO:0016641 - oxidoreductase activity, acting on the CH-NH2 group of donors, oxygen as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF024859.2
COORDINATES: protein motif:HMM:NF016763.2
COORDINATES: protein motif:HMM:TIGR00112.1
GO:0004735 - pyrroline-5-carboxylate reductase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00430.1
GO:0008479 - queuine tRNA-ribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF040713.1
COORDINATES: protein motif:HMM:NF002881.0
GO:0004801 - transaldolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00442.1
GO:0004821 - histidine-tRNA ligase activity [Evidence IEA]
GO:0006427 - histidyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002307075.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006418 - tRNA aminoacylation for protein translation [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003059492.1
GO:0004816 - asparagine-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
GO:0006421 - asparaginyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013559.2
COORDINATES: protein motif:HMM:NF014643.2
type II toxin-antitoxin system prevent-host-death family antitoxin
COORDINATES: protein motif:HMM:NF024603.2
COORDINATES: protein motif:HMM:NF018028.2
COORDINATES: protein motif:HMM:NF021443.2
COORDINATES: protein motif:HMM:TIGR02822.1
COORDINATES: protein motif:HMM:NF013331.2
COORDINATES: protein motif:HMM:NF005057.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0008986 - pyruvate, water dikinase activity [Evidence IEA]; GO:0016772 - transferase activity, transferring phosphorus-containing groups [Evidence IEA]
GO:0016310 - phosphorylation [Evidence IEA]; GO:0006090 - pyruvate metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013177130.1
COORDINATES: protein motif:HMM:NF041374.1
GDCCVxC domain-containing (seleno)protein
COORDINATES: protein motif:HMM:NF024872.2
COORDINATES: protein motif:HMM:TIGR02094.1
COORDINATES: protein motif:HMM:NF019911.2
COORDINATES: protein motif:HMM:NF024575.2
COORDINATES: protein motif:HMM:NF013916.2
COORDINATES: protein motif:HMM:NF039315.1
COORDINATES: protein motif:HMM:NF015451.2
COORDINATES: protein motif:HMM:NF019349.2
COORDINATES: protein motif:HMM:NF017951.2
COORDINATES: protein motif:HMM:NF024771.2
COORDINATES: protein motif:HMM:NF025934.2
GO:0047487 - oligogalacturonide lyase activity [Evidence IEA]
GO:0045490 - pectin catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF028442.2
COORDINATES: similar to AA sequence:RefSeq:WP_017953370.1
GO:0015833 - peptide transport [Evidence IEA]
dipeptide ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF017026.2
COORDINATES: protein motif:HMM:TIGR03723.1
tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD
COORDINATES: protein motif:HMM:TIGR03999.1
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA
COORDINATES: protein motif:HMM:NF024779.2
outer membrane lipoprotein carrier protein LolA
COORDINATES: protein motif:HMM:NF008909.0
GO:0004333 - fumarate hydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021558.2
COORDINATES: protein motif:HMM:NF037100.2
COORDINATES: protein motif:HMM:TIGR04350.1
GO:0003824 - catalytic activity [Evidence IEA]; GO:0030170 - pyridoxal phosphate binding [Evidence IEA]
GO:0009001 - serine O-acetyltransferase activity [Evidence IEA]
GO:0006535 - cysteine biosynthetic process from serine [Evidence IEA]
COORDINATES: protein motif:HMM:NF023568.2
COORDINATES: protein motif:HMM:NF012208.0
bifunctional dihydropteridine reductase/dihydrofolate reductase TmpR
COORDINATES: protein motif:HMM:NF004852.0
COORDINATES: protein motif:HMM:NF013213.2
GO:0016788 - hydrolase activity, acting on ester bonds [Evidence IEA]
COORDINATES: protein motif:HMM:NF035939.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178591.1
GlsB/YeaQ/YmgE family stress response membrane protein
COORDINATES: protein motif:HMM:NF013761.2
COORDINATES: protein motif:HMM:NF002852.0
GO:0003842 - 1-pyrroline-5-carboxylate dehydrogenase activity [Evidence IEA]
GO:0006562 - proline catabolic process [Evidence IEA]
L-glutamate gamma-semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF024626.2
branched-chain amino acid ABC transporter ATP-binding protein/permease
COORDINATES: protein motif:HMM:TIGR02295.1
GO:0008687 - 3,4-dihydroxyphenylacetate 2,3-dioxygenase activity [Evidence IEA]
3,4-dihydroxyphenylacetate 2,3-dioxygenase
COORDINATES: protein motif:HMM:TIGR02309.1
4-hydroxyphenylacetate 3-monooxygenase, oxygenase component
COORDINATES: protein motif:HMM:TIGR02299.1
GO:0018480 - 5-carboxymethyl-2-hydroxymuconic-semialdehyde dehydrogenase activity [Evidence IEA]
GO:1901023 - 4-hydroxyphenylacetate catabolic process [Evidence IEA]
5-carboxymethyl-2-hydroxymuconate semialdehyde dehydrogenase
COORDINATES: protein motif:HMM:NF023125.2
COORDINATES: protein motif:HMM:TIGR02303.1
GO:0008840 - 4-hydroxy-tetrahydrodipicolinate synthase activity [Evidence IEA]
4-hydroxy-tetrahydrodipicolinate synthase
COORDINATES: protein motif:HMM:TIGR02286.1
hydroxyphenylacetyl-CoA thioesterase PaaI
COORDINATES: protein motif:HMM:TIGR02278.1
phenylacetic acid degradation bifunctional protein PaaZ
COORDINATES: protein motif:HMM:NF040503.1
arsinothricin resistance N-acetyltransferase ArsN1
COORDINATES: similar to AA sequence:RefSeq:WP_004810563.1
GO:0055052 - ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
phosphate ABC transporter ATP-binding protein PstB
COORDINATES: protein motif:HMM:TIGR00974.1
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02138.1
phosphate ABC transporter permease subunit PstC
COORDINATES: protein motif:HMM:TIGR00975.1
GO:0015415 - ATPase-coupled phosphate ion transmembrane transporter activity [Evidence IEA]; GO:0042301 - phosphate ion binding [Evidence IEA]
phosphate ABC transporter substrate-binding protein PstS
COORDINATES: protein motif:HMM:TIGR01097.1
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]
GO:0015716 - organic phosphonate transport [Evidence IEA]
phosphonate ABC transporter, permease protein PhnE
COORDINATES: protein motif:HMM:TIGR02315.1
GO:0015416 - ABC-type phosphonate transporter activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]
phosphonate ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF024376.2
GO:0043168 - anion binding [Evidence IEA]; GO:0043225 - ATPase-coupled inorganic anion transmembrane transporter activity [Evidence IEA]
phosphate/phosphite/phosphonate ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013777.2
COORDINATES: protein motif:HMM:NF004167.0
GO:0016407 - acetyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03557.1
TIGR03885 family FMN-dependent LLM class oxidoreductase
COORDINATES: protein motif:HMM:TIGR00344.1
GO:0004813 - alanine-tRNA ligase activity [Evidence IEA]
GO:0006419 - alanyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00099.1
COORDINATES: protein motif:HMM:NF015607.2
COORDINATES: protein motif:HMM:TIGR00247.1
GO:0008932 - lytic endotransglycosylase activity [Evidence IEA]
GO:0071555 - cell wall organization [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00261.1
COORDINATES: protein motif:HMM:NF014668.2
GO:0006282 - regulation of DNA repair [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00369.1
COORDINATES: protein motif:HMM:TIGR01063.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003916 - DNA topoisomerase activity [Evidence IEA]; GO:0003918 - DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:NF014470.2
GO:0015628 - protein secretion by the type II secretion system [Evidence IEA]
twin-arginine translocase TatA/TatE family subunit
COORDINATES: protein motif:HMM:TIGR00945.1
COORDINATES: protein motif:HMM:NF009239.0
GO:0009073 - aromatic amino acid family biosynthetic process [Evidence IEA]; GO:0046417 - chorismate metabolic process [Evidence IEA]
bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase
COORDINATES: protein motif:HMM:NF018485.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003054816.1
GO:0003883 - CTP synthase activity [Evidence IEA]
GO:0006241 - CTP biosynthetic process [Evidence IEA]; GO:0006221 - pyrimidine nucleotide biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004018.0
GO:0004849 - uridine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF039831.1
COORDINATES: protein motif:HMM:TIGR03609.1
GO:0046919 - pyruvyltransferase activity [Evidence IEA]
GO:0042545 - cell wall modification [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013177187.1
COORDINATES: protein motif:HMM:NF012428.2
aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF002872.1
GO:0032559 - adenyl ribonucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF014090.2
COORDINATES: protein motif:HMM:NF014215.2
COORDINATES: similar to AA sequence:RefSeq:WP_009567413.1
GO:0004831 - tyrosine-tRNA ligase activity [Evidence IEA]
GO:0006437 - tyrosyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF007161.0
decarboxylating 6-phosphogluconate dehydrogenase
COORDINATES: protein motif:HMM:TIGR00871.1
GO:0004345 - glucose-6-phosphate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001824.0
GO:0009380 - excinuclease repair complex [Evidence IEA]
GO:0009381 - excinuclease ABC activity [Evidence IEA]
GO:0006289 - nucleotide-excision repair [Evidence IEA]
COORDINATES: protein motif:HMM:NF024910.2
COORDINATES: protein motif:HMM:NF011657.0
COORDINATES: protein motif:HMM:NF013591.2
GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013180.2
COORDINATES: protein motif:HMM:NF006695.0
GO:0004516 - nicotinate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03156.1
COORDINATES: protein motif:HMM:NF016142.2
COORDINATES: protein motif:HMM:NF024855.2
COORDINATES: protein motif:HMM:NF021489.2
COORDINATES: similar to AA sequence:RefSeq:WP_002489686.1
COORDINATES: protein motif:HMM:NF016086.2
COORDINATES: similar to AA sequence:RefSeq:WP_019965835.1
circularly permuted type 2 ATP-grasp protein
COORDINATES: protein motif:HMM:NF012951.2
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF009093.0
GO:0003858 - 3-hydroxybutyrate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016274.2
COORDINATES: similar to AA sequence:RefSeq:WP_012537242.1
GO:0050126 - N-carbamoylputrescine amidase activity [Evidence IEA]
GO:0009446 - putrescine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00614.1
GO:0004386 - helicase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF016240.2
COORDINATES: protein motif:HMM:TIGR00089.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0008172 - S-methyltransferase activity [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
GO:0018339 - peptidyl-L-beta-methylthioaspartic acid biosynthetic process from peptidyl-aspartic acid [Evidence IEA]
30S ribosomal protein S12 methylthiotransferase RimO
COORDINATES: similar to AA sequence:RefSeq:WP_016078581.1
amino acid ABC transporter ATP-binding protein
GO:0006865 - amino acid transport [Evidence IEA]
GO:0015837 - amine transport [Evidence IEA]
The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc.; The N-terminal region of this protein, as described by TIGR01726, is a three transmembrane segment that identifies a subfamily of ABC transporter permease subunits, which specificities that include histidine, arginine, glutamine, glutamate, L-cystine (sic), the opines (in Agrobacterium) octopine and nopaline, etc; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF012707.2
amino acid ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:TIGR00309.1
COORDINATES: protein motif:HMM:NF003235.0
COORDINATES: protein motif:HMM:NF003220.0
COORDINATES: protein motif:HMM:NF014092.2
COORDINATES: protein motif:HMM:NF014094.2
COORDINATES: protein motif:HMM:NF014093.2
COORDINATES: protein motif:HMM:NF012365.2
COORDINATES: protein motif:HMM:NF013647.2
GO:0033179 - proton-transporting V-type ATPase, V0 domain [Evidence IEA]
GO:0015078 - proton transmembrane transporter activity [Evidence IEA]
GO:1902600 - proton transmembrane transport [Evidence IEA]
V-type ATPase 116kDa subunit family protein
COORDINATES: protein motif:HMM:NF028309.2
V-type ATPase subunit subunit G family protein
COORDINATES: protein motif:HMM:NF019334.2
COORDINATES: protein motif:HMM:NF025119.2
COORDINATES: protein motif:HMM:NF023376.2
COORDINATES: protein motif:HMM:NF008994.0
GO:0005829 - cytosol [Evidence IEA]; GO:0005777 - peroxisome [Evidence IEA]
GO:0035539 - 8-oxo-7,8-dihydrodeoxyguanosine triphosphate pyrophosphatase activity [Evidence IEA]; GO:0008413 - 8-oxo-7,8-dihydroguanosine triphosphate pyrophosphatase activity [Evidence IEA]; GO:0003986 - acetyl-CoA hydrolase activity [Evidence IEA]; GO:0010945 - CoA pyrophosphatase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0030145 - manganese ion binding [Evidence IEA]
GO:0015938 - coenzyme A catabolic process [Evidence IEA]; GO:0006281 - DNA repair [Evidence IEA]; GO:0009132 - nucleoside diphosphate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF008986.0
COORDINATES: protein motif:HMM:NF014619.2
COORDINATES: protein motif:HMM:NF019533.2
COORDINATES: protein motif:HMM:NF014447.2
COORDINATES: protein motif:HMM:NF019365.2
GO:0015926 - glucosidase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013177695.1
COORDINATES: similar to AA sequence:RefSeq:WP_013177694.1
COORDINATES: protein motif:HMM:NF012993.2
nitrilase-related carbon-nitrogen hydrolase
COORDINATES: protein motif:HMM:NF024988.2
COORDINATES: protein motif:HMM:TIGR00182.1
GO:0043811 - phosphate:acyl-[acyl carrier protein] acyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00005.1
GO:0009982 - pseudouridine synthase activity [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
GO:0001522 - pseudouridine synthesis [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02290.1
COORDINATES: protein motif:HMM:TIGR02100.1
GO:0004133 - glycogen debranching enzyme activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024854.2
MarR family winged helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_007051681.1
heavy metal-binding domain-containing protein
COORDINATES: protein motif:HMM:NF003483.0
GO:0004815 - aspartate-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006422 - aspartyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF003296.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004797 - thymidine kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025702.2
COORDINATES: similar to AA sequence:RefSeq:WP_007302170.1
GO:0004298 - threonine-type endopeptidase activity [Evidence IEA]
GO:0051603 - proteolysis involved in protein catabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016448039.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]
ATP-dependent protease ATPase subunit HslU
COORDINATES: similar to AA sequence:RefSeq:WP_016290306.1
GO:0006950 - response to stress [Evidence IEA]; GO:0006412 - translation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02402.1
GO:0016798 - hydrolase activity, acting on glycosyl bonds [Evidence IEA]
GO:0005992 - trehalose biosynthetic process [Evidence IEA]
malto-oligosyltrehalose trehalohydrolase
COORDINATES: protein motif:HMM:TIGR02401.1
GO:0047470 - (1,4)-alpha-D-glucan 1-alpha-D-glucosylmutase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014624.2
COORDINATES: protein motif:HMM:TIGR01511.1
GO:0005375 - copper ion transmembrane transporter activity [Evidence IEA]; GO:0043682 - P-type divalent copper transporter activity [Evidence IEA]
GO:0006825 - copper ion transport [Evidence IEA]
GO:0005524 - ATP binding [Evidence IEA]; GO:0019829 - ATPase-coupled monoatomic cation transmembrane transporter activity [Evidence IEA]
GO:0006812 - monoatomic cation transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF015658.2
COORDINATES: protein motif:HMM:TIGR00510.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016992 - lipoate synthase activity [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]
GO:0009107 - lipoate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF010925.0
GO:0033819 - lipoyl(octanoyl) transferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_001193050.1
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]; GO:0001072 - transcription antitermination factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019928.2
COORDINATES: protein motif:HMM:NF008295.0
GO:0008173 - RNA methyltransferase activity [Evidence IEA]; GO:0009020 - tRNA (guanosine-2'-O-)-methyltransferase activity [Evidence IEA]
GO:0030488 - tRNA methylation [Evidence IEA]
tRNA (guanosine(18)-2'-O)-methyltransferase TrmH
COORDINATES: protein motif:HMM:NF012457.2
GO:0008422 - beta-glucosidase activity [Evidence IEA]
GO:0030245 - cellulose catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02631.1
GO:0009045 - xylose isomerase activity [Evidence IEA]
GO:0042732 - D-xylose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013177399.1
COORDINATES: protein motif:HMM:NF012551.2
COORDINATES: protein motif:HMM:NF036966.2
COORDINATES: protein motif:HMM:NF012922.2
COORDINATES: protein motif:HMM:TIGR03800.1
GO:0042823 - pyridoxal phosphate biosynthetic process [Evidence IEA]
pyridoxal 5'-phosphate synthase glutaminase subunit PdxT
COORDINATES: protein motif:HMM:NF015535.2
transglycosylase domain-containing protein
COORDINATES: protein motif:HMM:NF026010.2
tyrosine-type recombinase/integrase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013176940.1
COORDINATES: protein motif:HMM:NF011949.0
GO:0042806 - fucose binding [Evidence IEA]; GO:0016854 - racemase and epimerase activity [Evidence IEA]
GO:0042354 - L-fucose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013178360.1
COORDINATES: protein motif:HMM:NF022337.2
COORDINATES: protein motif:HMM:TIGR02824.1
COORDINATES: protein motif:HMM:NF020906.2
COORDINATES: protein motif:HMM:NF039496.1
COORDINATES: similar to AA sequence:RefSeq:WP_018287220.1
GO:0004823 - leucine-tRNA ligase activity [Evidence IEA]
GO:0006429 - leucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF022462.2
COORDINATES: protein motif:HMM:TIGR01420.1
GO:0043107 - type IV pilus-dependent motility [Evidence IEA]
COORDINATES: protein motif:HMM:NF018805.2
lipocalin-like domain-containing protein
COORDINATES: protein motif:HMM:NF012387.2
GO:0016018 - cyclosporin A binding [Evidence IEA]; GO:0003755 - peptidyl-prolyl cis-trans isomerase activity [Evidence IEA]
GO:0006457 - protein folding [Evidence IEA]; GO:0000413 - protein peptidyl-prolyl isomerization [Evidence IEA]
COORDINATES: protein motif:HMM:NF014035.2
sulfite exporter TauE/SafE family protein
COORDINATES: protein motif:HMM:NF016268.2
COORDINATES: protein motif:HMM:NF023857.2
COORDINATES: protein motif:HMM:NF012927.2
COORDINATES: protein motif:HMM:TIGR00587.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0016888 - endodeoxyribonuclease activity, producing 5'-phosphomonoesters [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF017174.2
COORDINATES: nucleotide motif:Rfam:14.4:RF01786
cyclic di-GMP riboswitch class II; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF012385.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0008134 - transcription factor binding [Evidence IEA]
sigma 54-interacting transcriptional regulator
COORDINATES: protein motif:HMM:NF001813.0
COORDINATES: similar to AA sequence:RefSeq:WP_013177198.1
COORDINATES: protein motif:HMM:NF009344.0
COORDINATES: similar to AA sequence:RefSeq:WP_016445698.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IEA]; GO:0004749 - ribose phosphate diphosphokinase activity [Evidence IEA]
GO:0006015 - 5-phosphoribose 1-diphosphate biosynthetic process [Evidence IEA]; GO:0009165 - nucleotide biosynthetic process [Evidence IEA]; GO:0016310 - phosphorylation [Evidence IEA]; GO:0009156 - ribonucleoside monophosphate biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00731.1
GO:0008097 - 5S rRNA binding [Evidence IEA]; GO:0003735 - structural constituent of ribosome [Evidence IEA]
COORDINATES: protein motif:HMM:NF013368.2
COORDINATES: protein motif:HMM:NF013607.2
GO:0030612 - arsenate reductase (thioredoxin) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012455.2
GO:0015267 - channel activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015596.2
COORDINATES: protein motif:HMM:NF012371.2
serine hydrolase domain-containing protein
COORDINATES: protein motif:HMM:NF037679.2
COORDINATES: protein motif:HMM:NF018410.2
COORDINATES: protein motif:HMM:NF017743.2
class I SAM-dependent RNA methyltransferase
COORDINATES: protein motif:HMM:TIGR02151.1
GO:0004452 - isopentenyl-diphosphate delta-isomerase activity [Evidence IEA]
GO:0008299 - isoprenoid biosynthetic process [Evidence IEA]
type 2 isopentenyl-diphosphate Delta-isomerase
COORDINATES: protein motif:HMM:NF012797.2
COORDINATES: protein motif:HMM:TIGR00552.1
GO:0008795 - NAD+ synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00220.1
large conductance mechanosensitive channel protein MscL
COORDINATES: protein motif:HMM:NF022727.2
COORDINATES: similar to AA sequence:RefSeq:WP_004091254.1
GO:0043190 - ATP-binding cassette (ABC) transporter complex [Evidence IEA]; GO:0009898 - cytoplasmic side of plasma membrane [Evidence IEA]
GO:0042626 - ATPase-coupled transmembrane transporter activity [Evidence IEA]; GO:0015221 - lipopolysaccharide transmembrane transporter activity [Evidence IEA]
GO:0015920 - lipopolysaccharide transport [Evidence IEA]
LPS export ABC transporter ATP-binding protein
COORDINATES: protein motif:HMM:NF028222.2
alcohol dehydrogenase catalytic domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_008814576.1
GO:0004738 - pyruvate dehydrogenase activity [Evidence IEA]
pyruvate dehydrogenase (acetyl-transferring), homodimeric type
COORDINATES: protein motif:HMM:TIGR02734.1
GO:0016166 - phytoene dehydrogenase activity [Evidence IEA]
GO:0016117 - carotenoid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012695.2
GO:0008878 - glucose-1-phosphate adenylyltransferase activity [Evidence IEA]
GO:0005978 - glycogen biosynthetic process [Evidence IEA]
glucose-1-phosphate adenylyltransferase family protein
COORDINATES: protein motif:HMM:NF013646.2
COORDINATES: protein motif:HMM:NF004851.0
COORDINATES: protein motif:HMM:NF012421.2
COORDINATES: protein motif:HMM:NF004079.0
GO:0008782 - adenosylhomocysteine nucleosidase activity [Evidence IEA]; GO:0008930 - methylthioadenosine nucleosidase activity [Evidence IEA]
GO:0019509 - L-methionine salvage from methylthioadenosine [Evidence IEA]; GO:0009164 - nucleoside catabolic process [Evidence IEA]; GO:0009116 - nucleoside metabolic process [Evidence IEA]
5'-methylthioadenosine/adenosylhomocysteine nucleosidase
COORDINATES: protein motif:HMM:NF024743.2
DUF4097 family beta strand repeat-containing protein
COORDINATES: protein motif:HMM:NF021388.2
COORDINATES: protein motif:HMM:NF018980.2
COORDINATES: protein motif:HMM:NF023697.2
COORDINATES: protein motif:HMM:NF009116.0
GO:0009316 - 3-isopropylmalate dehydratase complex [Evidence IEA]
GO:0003861 - 3-isopropylmalate dehydratase activity [Evidence IEA]
GO:0009098 - leucine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF002458.0
COORDINATES: protein motif:HMM:NF036460.2
COORDINATES: protein motif:HMM:TIGR00169.1
GO:0003862 - 3-isopropylmalate dehydrogenase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013183.2
COORDINATES: protein motif:HMM:TIGR00211.2
GO:0009345 - glycine-tRNA ligase complex [Evidence IEA]
GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]
GO:0006426 - glycyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00388.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0004820 - glycine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF019344.2
ATP-dependent Clp protease ATP-binding subunit
COORDINATES: protein motif:HMM:TIGR00416.1
COORDINATES: protein motif:HMM:NF014047.2
COORDINATES: protein motif:HMM:NF017515.2
(2Fe-2S) ferredoxin domain-containing protein
COORDINATES: protein motif:HMM:NF001211.0
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01475.1
GO:0008412 - 4-hydroxybenzoate octaprenyltransferase activity [Evidence IEA]
GO:0006744 - ubiquinone biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024593.2
COORDINATES: protein motif:HMM:NF016300.2
The SIMPL domain is named for its presence in mouse protein SIMPL (signalling molecule that associates with mouse pelle-like kinase). Bacterial member BP26, from Brucella, was shown to assemble into a channel-like structure, while YggE from E. coli has been associated with resistance to oxidative stress; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013918.2
ferric reductase-like transmembrane domain-containing protein
COORDINATES: protein motif:HMM:TIGR00636.1
COORDINATES: protein motif:HMM:NF016150.2
GO:0070007 - glutamic-type endopeptidase activity [Evidence IEA]
CPBP family glutamic-type intramembrane protease
COORDINATES: protein motif:HMM:NF016155.2
COORDINATES: protein motif:HMM:NF014019.2
COORDINATES: protein motif:HMM:NF012705.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004659 - prenyltransferase activity [Evidence IEA]
phytoene/squalene synthase family protein
COORDINATES: protein motif:HMM:NF001540.0
GO:0046429 - 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity [Evidence IEA]
GO:0044237 - cellular metabolic process [Evidence IEA]
flavodoxin-dependent (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase
COORDINATES: protein motif:HMM:NF005495.0
COORDINATES: protein motif:HMM:NF014068.2
type 1 glutamine amidotransferase domain-containing protein
GO:0005524 - ATP binding [Evidence IEA]; GO:0005215 - transporter activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015057.2
COORDINATES: protein motif:HMM:NF019246.2
YkoF family thiamine/hydroxymethylpyrimidine-binding protein
GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF002326.0
GO:0016793 - triphosphoric monoester hydrolase activity [Evidence IEA]
deoxyguanosinetriphosphate triphosphohydrolase
COORDINATES: protein motif:HMM:NF022077.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0140663 - ATP-dependent FeS chaperone activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_006783699.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003922 - GMP synthase (glutamine-hydrolyzing) activity [Evidence IEA]; GO:0016462 - pyrophosphatase activity [Evidence IEA]
GO:0006177 - GMP biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024753.2
PQQ-binding-like beta-propeller repeat protein
COORDINATES: protein motif:HMM:NF013995.2
GO:0004180 - carboxypeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013768.2
COORDINATES: protein motif:HMM:NF014448.2
molybdenum cofactor biosynthesis protein MoaE
GO:0016616 - oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor [Evidence IEA]
COORDINATES: protein motif:HMM:NF015406.2
COORDINATES: nucleotide motif:Rfam:14.4:RF00023
COORDINATES: similar to AA sequence:RefSeq:WP_016289947.1
COORDINATES: protein motif:HMM:NF012926.2
COORDINATES: protein motif:HMM:NF009492.0
GO:0006006 - glucose metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF001209.0
GO:0016747 - acyltransferase activity, transferring groups other than amino-acyl groups [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01326.1
GO:0019346 - transsulfuration [Evidence IEA]
COORDINATES: nucleotide motif:Rfam:14.4:RF00162
SAM riboswitch class I; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: protein motif:HMM:NF013413.2
GO:0070573 - metallodipeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF013380.2
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
tRNA-dihydrouridine synthase family protein
COORDINATES: protein motif:HMM:TIGR00810.1
COORDINATES: similar to AA sequence:RefSeq:WP_012216258.1
COORDINATES: protein motif:HMM:NF013116.2
COORDINATES: protein motif:HMM:TIGR01873.1
type I-E CRISPR-associated endoribonuclease Cas2e
COORDINATES: protein motif:HMM:TIGR03638.1
GO:0004520 - endodeoxyribonuclease activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]
type I-E CRISPR-associated endonuclease Cas1e
COORDINATES: protein motif:HMM:TIGR01907.1
type I-E CRISPR-associated protein Cas6/Cse3/CasE
COORDINATES: protein motif:HMM:NF021240.2
type I-E CRISPR-associated protein Cas5/CasD
COORDINATES: protein motif:HMM:NF020902.2
type I-E CRISPR-associated protein Cas7/Cse4/CasC
COORDINATES: protein motif:HMM:TIGR02548.1
type I-E CRISPR-associated protein Cse2/CasB
COORDINATES: protein motif:HMM:TIGR02547.1
type I-E CRISPR-associated protein Cse1/CasA
COORDINATES: protein motif:HMM:TIGR01587.1
CRISPR-associated helicase/endonuclease Cas3
COORDINATES: protein motif:HMM:NF024676.2
COORDINATES: similar to AA sequence:RefSeq:WP_017492510.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0008186 - ATP-dependent activity, acting on RNA [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00392.1
GO:0004822 - isoleucine-tRNA ligase activity [Evidence IEA]
GO:0006428 - isoleucyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00765.1
COORDINATES: similar to AA sequence:RefSeq:WP_011897301.1
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0019682 - glyceraldehyde-3-phosphate metabolic process [Evidence IEA]; GO:0006096 - glycolytic process [Evidence IEA]
type I glyceraldehyde-3-phosphate dehydrogenase
COORDINATES: protein motif:HMM:NF012389.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0004618 - phosphoglycerate kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF028132.2
COORDINATES: protein motif:HMM:NF021221.2
COORDINATES: similar to AA sequence:RefSeq:WP_018036536.1
GO:0004834 - tryptophan synthase activity [Evidence IEA]
GO:0000162 - tryptophan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00262.1
COORDINATES: protein motif:HMM:TIGR00413.1
septal ring lytic transglycosylase RlpA family protein
COORDINATES: protein motif:HMM:TIGR00010.1
COORDINATES: protein motif:HMM:TIGR01668.1
GO:0008962 - phosphatidylglycerophosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF012652.2
type IV pilus twitching motility protein PilT
COORDINATES: protein motif:HMM:NF017078.2
incomplete; partial in the middle of a contig; missing N-terminus and C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF013253.2
COORDINATES: protein motif:HMM:NF025701.2
protease complex subunit PrcB family protein
COORDINATES: protein motif:HMM:NF024240.2
ADP-ribosylglycohydrolase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_019292901.1
COORDINATES: protein motif:HMM:TIGR01229.1
GO:0004053 - arginase activity [Evidence IEA]
GO:0019547 - arginine catabolic process to ornithine [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00594.1
COORDINATES: protein motif:HMM:NF010885.0
GO:0006457 - protein folding [Evidence IEA]; GO:0009408 - response to heat [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_012203085.1
COORDINATES: protein motif:HMM:TIGR01814.1
GO:0030429 - kynureninase activity [Evidence IEA]
GO:0019441 - tryptophan catabolic process to kynurenine [Evidence IEA]
GO:0004061 - arylformamidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF008139.0
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004397.1
COORDINATES: protein motif:HMM:TIGR00196.1
bifunctional ADP-dependent NAD(P)H-hydrate dehydratase/NAD(P)H-hydrate epimerase
COORDINATES: protein motif:HMM:TIGR00191.1
GO:0004413 - homoserine kinase activity [Evidence IEA]
GO:0009088 - threonine biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013178641.1
COORDINATES: protein motif:HMM:NF017485.2
COORDINATES: protein motif:HMM:NF011524.0
COORDINATES: protein motif:HMM:TIGR00103.1
YbaB/EbfC family nucleoid-associated protein
COORDINATES: similar to AA sequence:RefSeq:WP_003061588.1
COORDINATES: protein motif:HMM:TIGR01051.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003917 - DNA topoisomerase type I (single strand cut, ATP-independent) activity [Evidence IEA]
GO:0006260 - DNA replication [Evidence IEA]; GO:0006265 - DNA topological change [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02673.1
COORDINATES: protein motif:HMM:NF022702.2
COORDINATES: protein motif:HMM:NF014525.2
COORDINATES: protein motif:HMM:NF013760.2
GO:0015031 - protein transport [Evidence IEA]
MotA/TolQ/ExbB proton channel family protein
COORDINATES: protein motif:HMM:NF000584.1
GO:0008964 - phosphoenolpyruvate carboxylase activity [Evidence IEA]
GO:0015977 - carbon fixation [Evidence IEA]; GO:0006099 - tricarboxylic acid cycle [Evidence IEA]
COORDINATES: protein motif:HMM:NF024674.2
COORDINATES: protein motif:HMM:NF015893.2
COORDINATES: protein motif:HMM:NF012774.2
COORDINATES: protein motif:HMM:NF015418.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0030151 - molybdenum ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00567.1
COORDINATES: protein motif:HMM:NF014003.2
COORDINATES: protein motif:HMM:NF002999.0
GO:0010181 - FMN binding [Evidence IEA]; GO:0003955 - NAD(P)H dehydrogenase (quinone) activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024212.2
COORDINATES: protein motif:HMM:TIGR01297.1
cation diffusion facilitator family transporter
COORDINATES: protein motif:HMM:NF013696.2
COORDINATES: protein motif:HMM:TIGR00147.1
COORDINATES: protein motif:HMM:NF013222.2
GO:0003908 - methylated-DNA-[protein]-cysteine S-methyltransferase activity [Evidence IEA]
methylated-DNA--[protein]-cysteine S-methyltransferase
COORDINATES: protein motif:HMM:TIGR00836.1
GO:0008519 - ammonium transmembrane transporter activity [Evidence IEA]
GO:0072488 - ammonium transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF012753.2
COORDINATES: protein motif:HMM:TIGR01574.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:1904047 - S-adenosyl-L-methionine binding [Evidence IEA]; GO:0016782 - transferase activity, transferring sulphur-containing groups [Evidence IEA]
tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB
COORDINATES: protein motif:HMM:NF012602.2
COORDINATES: similar to AA sequence:RefSeq:WP_013179156.1
COORDINATES: protein motif:HMM:NF014471.2
GO:0015109 - chromate transmembrane transporter activity [Evidence IEA]
GO:0015703 - chromate transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF013206.2
gamma-glutamyltransferase family protein
COORDINATES: protein motif:HMM:NF012544.2
COORDINATES: protein motif:HMM:NF012478.2
COORDINATES: protein motif:HMM:NF016365.2
COORDINATES: protein motif:HMM:TIGR01790.1
COORDINATES: protein motif:HMM:TIGR00367.1
GO:0098662 - inorganic cation transmembrane transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF009405.0
transporter substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:TIGR00492.1
GO:0008784 - alanine racemase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015370.2
GO:0045300 - acyl-[acyl-carrier-protein] desaturase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025686.2
COORDINATES: protein motif:HMM:NF015000.2
COORDINATES: similar to AA sequence:RefSeq:WP_010886870.1
phosphoribosylformylglycinamidine synthase subunit PurS
COORDINATES: similar to AA sequence:RefSeq:WP_020092484.1
GO:0004639 - phosphoribosylaminoimidazolesuccinocarboxamide synthase activity [Evidence IEA]
phosphoribosylaminoimidazolesuccinocarboxamide synthase
COORDINATES: protein motif:HMM:NF022736.2
COORDINATES: protein motif:HMM:TIGR00928.1
GO:0004018 - N6-(1,2-dicarboxyethyl)AMP AMP-lyase (fumarate-forming) activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02587.1
COORDINATES: protein motif:HMM:NF014631.2
GO:1990397 - queuosine salvage [Evidence IEA]
GO:0004177 - aminopeptidase activity [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03707.1
GO:0006793 - phosphorus metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012241.2
COORDINATES: similar to AA sequence:RefSeq:WP_013177164.1
COORDINATES: protein motif:HMM:NF014602.2
COORDINATES: protein motif:HMM:NF016859.2
DNA-directed RNA polymerase subunit beta'
COORDINATES: protein motif:HMM:NF001616.1
GO:0003677 - DNA binding [Evidence IEA]; GO:0003899 - DNA-directed 5'-3' RNA polymerase activity [Evidence IEA]; GO:0032549 - ribonucleoside binding [Evidence IEA]
DNA-directed RNA polymerase subunit beta
COORDINATES: similar to AA sequence:RefSeq:WP_005122872.1
COORDINATES: protein motif:HMM:NF000955.1
GO:0015934 - large ribosomal subunit [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_003127078.1
COORDINATES: similar to AA sequence:RefSeq:WP_013028894.1
COORDINATES: similar to AA sequence:RefSeq:WP_018286740.1
transcription termination/antitermination protein NusG
COORDINATES: protein motif:HMM:NF012793.2
COORDINATES: similar to AA sequence:RefSeq:WP_003829846.1
COORDINATES: protein motif:HMM:NF014826.2
COORDINATES: protein motif:HMM:TIGR02274.1
GO:0008829 - dCTP deaminase activity [Evidence IEA]
GO:0009394 - 2'-deoxyribonucleotide metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF024949.2
COORDINATES: protein motif:HMM:TIGR00431.1
GO:0004730 - pseudouridylate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00518.1
GO:0000286 - alanine dehydrogenase activity [Evidence IEA]
GO:0006522 - alanine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013625.2
COORDINATES: protein motif:HMM:TIGR00084.1
GO:0009379 - Holliday junction helicase complex [Evidence IEA]
GO:0009378 - four-way junction helicase activity [Evidence IEA]
Holliday junction branch migration protein RuvA
COORDINATES: protein motif:HMM:TIGR01069.1
GO:0030983 - mismatched DNA binding [Evidence IEA]
GO:0006259 - DNA metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF021539.2
COORDINATES: protein motif:HMM:TIGR00730.1
COORDINATES: protein motif:HMM:NF019350.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0000155 - phosphorelay sensor kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014430.2
COORDINATES: protein motif:HMM:NF013698.2
COORDINATES: protein motif:HMM:NF000756.0
GO:0004370 - glycerol kinase activity [Evidence IEA]
GO:0006071 - glycerol metabolic process [Evidence IEA]
PLP-dependent aspartate aminotransferase family protein
COORDINATES: protein motif:HMM:NF014296.2
GO:0004489 - methylenetetrahydrofolate reductase (NAD(P)H) activity [Evidence IEA]
GO:0006555 - methionine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF007024.0
GO:0031419 - cobalamin binding [Evidence IEA]; GO:0008705 - methionine synthase activity [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA]
GO:0009086 - methionine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF036395.2
COORDINATES: protein motif:HMM:NF014592.2
S-adenosylmethionine:tRNA ribosyltransferase-isomerase
COORDINATES: similar to AA sequence:RefSeq:WP_015576101.1
COORDINATES: protein motif:HMM:NF022934.2
COORDINATES: protein motif:HMM:NF014832.2
ABC transporter transmembrane domain-containing protein
COORDINATES: protein motif:HMM:TIGR03562.1
GO:0004601 - peroxidase activity [Evidence IEA]; GO:0051920 - peroxiredoxin activity [Evidence IEA]
GO:0006972 - hyperosmotic response [Evidence IEA]; GO:0033194 - response to hydroperoxide [Evidence IEA]; GO:0006979 - response to oxidative stress [Evidence IEA]
COORDINATES: protein motif:HMM:NF022716.2
COORDINATES: protein motif:HMM:NF003673.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00755.1
GO:0000179 - rRNA (adenine-N6,N6-)-dimethyltransferase activity [Evidence IEA]
16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA
COORDINATES: protein motif:HMM:NF015531.2
COORDINATES: protein motif:HMM:NF003715.0
COORDINATES: protein motif:HMM:TIGR00260.1
GO:0004795 - threonine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF004976.0
GO:0004412 - homoserine dehydrogenase activity [Evidence IEA]; GO:0050661 - NADP binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF012686.2
COORDINATES: similar to AA sequence:RefSeq:WP_003026825.1
COORDINATES: protein motif:HMM:NF010499.0
COORDINATES: protein motif:HMM:NF014669.2
GO:0015225 - biotin transmembrane transporter activity [Evidence IEA]
GO:0015878 - biotin transport [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00232.1
GO:0004802 - transketolase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00152.1
GO:0004140 - dephospho-CoA kinase activity [Evidence IEA]
Dephospho-CoA kinase (CoaE) performs the final step in coenzyme A biosynthesis; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF014476.2
COORDINATES: protein motif:HMM:NF005613.0
GO:0051920 - peroxiredoxin activity [Evidence IEA]
carboxymuconolactone decarboxylase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_008394619.1
GO:0009349 - riboflavin synthase complex [Evidence IEA]
GO:0000906 - 6,7-dimethyl-8-ribityllumazine synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002378649.1
GO:0003978 - UDP-glucose 4-epimerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005146.0
GO:0004084 - branched-chain-amino-acid transaminase activity [Evidence IEA]
GO:0009081 - branched-chain amino acid metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF015297.2
GO:0016829 - lyase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_016292446.1
GO:0004827 - proline-tRNA ligase activity [Evidence IEA]
GO:0006433 - prolyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01910.1
COORDINATES: protein motif:HMM:NF004952.0
COORDINATES: protein motif:HMM:NF015944.2
COORDINATES: protein motif:HMM:TIGR00420.1
GO:0016783 - sulfurtransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00330.1
GO:0042132 - fructose 1,6-bisphosphate 1-phosphatase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF002747.0
GO:0004635 - phosphoribosyl-AMP cyclohydrolase activity [Evidence IEA]; GO:0004636 - phosphoribosyl-ATP diphosphatase activity [Evidence IEA]
bifunctional phosphoribosyl-AMP cyclohydrolase/phosphoribosyl-ATP diphosphatase HisIE
COORDINATES: protein motif:HMM:NF008774.0
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]; GO:0017150 - tRNA dihydrouridine synthase activity [Evidence IEA]
GO:0002943 - tRNA dihydrouridine synthesis [Evidence IEA]
tRNA dihydrouridine(20/20a) synthase DusA
COORDINATES: protein motif:HMM:TIGR00639.1
GO:0004644 - phosphoribosylglycinamide formyltransferase activity [Evidence IEA]
phosphoribosylglycinamide formyltransferase
COORDINATES: protein motif:HMM:TIGR00877.1
GO:0004637 - phosphoribosylamine-glycine ligase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF021916.2
GO:0004347 - glucose-6-phosphate isomerase activity [Evidence IEA]; GO:0004476 - mannose-6-phosphate isomerase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00204.1
GO:0008661 - 1-deoxy-D-xylulose-5-phosphate synthase activity [Evidence IEA]
GO:0009240 - isopentenyl diphosphate biosynthetic process [Evidence IEA]; GO:0008615 - pyridoxine biosynthetic process [Evidence IEA]; GO:0009228 - thiamine biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014269.2
LON peptidase substrate-binding domain-containing protein
COORDINATES: protein motif:HMM:NF013322.2
GO:0001522 - pseudouridine synthesis [Evidence IEA]; GO:0009451 - RNA modification [Evidence IEA]
COORDINATES: protein motif:HMM:NF010538.0
GO:0003723 - RNA binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF041131.1
regulatory iron-sulfur-containing complex subunit RicT
GO:0046872 - metal ion binding [Evidence IEA]; GO:0004222 - metalloendopeptidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01378.1
GO:0004788 - thiamine diphosphokinase activity [Evidence IEA]
GO:0006772 - thiamine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013286.2
GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF006829.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]; GO:0016746 - acyltransferase activity [Evidence IEA]; GO:0033818 - beta-ketoacyl-acyl-carrier-protein synthase III activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF024938.2
COORDINATES: protein motif:HMM:NF014664.2
GO:0071111 - cyclic-guanylate-specific phosphodiesterase activity [Evidence IEA]; GO:0052621 - diguanylate cyclase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
bifunctional diguanylate cyclase/phosphodiesterase
COORDINATES: protein motif:HMM:NF003738.0
COORDINATES: protein motif:HMM:NF010039.0
GO:0004357 - glutamate-cysteine ligase activity [Evidence IEA]
GO:0042398 - cellular modified amino acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF022517.2
COORDINATES: protein motif:HMM:NF012568.2
COORDINATES: protein motif:HMM:NF018731.2
COORDINATES: protein motif:HMM:NF033855.1
GO:0016645 - oxidoreductase activity, acting on the CH-NH group of donors [Evidence IEA]
tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD
COORDINATES: protein motif:HMM:NF015758.2
nucleoside triphosphate pyrophosphohydrolase family protein
COORDINATES: protein motif:HMM:TIGR01928.1
GO:0016836 - hydro-lyase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF015368.2
COORDINATES: protein motif:HMM:NF003739.0
GO:0050660 - flavin adenine dinucleotide binding [Evidence IEA]
methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO
COORDINATES: protein motif:HMM:NF037442.2
COORDINATES: protein motif:HMM:TIGR01254.1
thiamine ABC transporter substrate-binding protein
COORDINATES: protein motif:HMM:NF013283.2
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: protein motif:HMM:NF006054.0
GO:0004731 - purine-nucleoside phosphorylase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00044.1
YggS family pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF016959.2
COORDINATES: protein motif:HMM:NF024934.2
COORDINATES: protein motif:HMM:NF014375.2
COORDINATES: protein motif:HMM:NF001236.0
GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0004523 - RNA-DNA hybrid ribonuclease activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03942.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]
GO:0018209 - peptidyl-serine modification [Evidence IEA]; GO:0046500 - S-adenosylmethionine metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012265.2
COORDINATES: protein motif:HMM:NF009314.0
COORDINATES: protein motif:HMM:NF015993.2
COORDINATES: protein motif:HMM:NF009306.0
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]
GO:0042773 - ATP synthesis coupled electron transport [Evidence IEA]
COORDINATES: protein motif:HMM:NF009301.0
COORDINATES: protein motif:HMM:NF009163.0
COORDINATES: protein motif:HMM:NF009287.0
putative monovalent cation/H+ antiporter subunit A
COORDINATES: protein motif:HMM:NF014165.2
COORDINATES: protein motif:HMM:NF012239.2
COORDINATES: similar to AA sequence:RefSeq:WP_013179055.1
COORDINATES: similar to AA sequence:RefSeq:WP_013178204.1
COORDINATES: protein motif:HMM:NF004349.1
GO:0004812 - aminoacyl-tRNA ligase activity [Evidence IEA]; GO:0005524 - ATP binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004832 - valine-tRNA ligase activity [Evidence IEA]
GO:0006438 - valyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF012933.2
COORDINATES: protein motif:HMM:NF005594.0
COORDINATES: protein motif:HMM:NF003645.0
GO:0004152 - dihydroorotate dehydrogenase activity [Evidence IEA]
GO:0006222 - UMP biosynthetic process [Evidence IEA]
quinone-dependent dihydroorotate dehydrogenase
COORDINATES: protein motif:HMM:NF014762.2
metal-dependent transcriptional regulator
COORDINATES: protein motif:HMM:NF006088.0
GO:0016765 - transferase activity, transferring alkyl or aryl (other than methyl) groups [Evidence IEA]
COORDINATES: protein motif:HMM:NF005489.0
COORDINATES: protein motif:HMM:NF015651.2
COORDINATES: protein motif:HMM:NF022481.2
COORDINATES: protein motif:HMM:NF016370.2
COORDINATES: protein motif:HMM:NF024742.2
COORDINATES: protein motif:HMM:NF014051.2
COORDINATES: protein motif:HMM:NF012888.2
COORDINATES: protein motif:HMM:NF025072.2
COORDINATES: protein motif:HMM:NF003995.0
redox-sensing transcriptional repressor Rex
COORDINATES: protein motif:HMM:NF024299.2
COORDINATES: protein motif:HMM:TIGR00048.1
GO:0016433 - rRNA (adenine) methyltransferase activity [Evidence IEA]; GO:0008757 - S-adenosylmethionine-dependent methyltransferase activity [Evidence IEA]
GO:0031167 - rRNA methylation [Evidence IEA]
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN
COORDINATES: protein motif:HMM:NF002023.0
Stk1 family PASTA domain-containing Ser/Thr kinase
COORDINATES: protein motif:HMM:NF023395.2
histidine triad nucleotide-binding protein
COORDINATES: protein motif:HMM:NF008945.0
ATP phosphoribosyltransferase regulatory subunit
COORDINATES: protein motif:HMM:TIGR00070.1
GO:0003879 - ATP phosphoribosyltransferase activity [Evidence IEA]
GO:0003985 - acetyl-CoA C-acetyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_000508175.1
COORDINATES: protein motif:HMM:NF019500.2
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: similar to AA sequence:RefSeq:WP_016099277.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013702.2
lysophospholipid acyltransferase family protein
COORDINATES: protein motif:HMM:NF037081.2
GO:0030261 - chromosome condensation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00719.1
GO:0003941 - L-serine ammonia-lyase activity [Evidence IEA]
GO:0006094 - gluconeogenesis [Evidence IEA]; GO:0006565 - L-serine catabolic process [Evidence IEA]
L-serine ammonia-lyase, iron-sulfur-dependent subunit beta
COORDINATES: protein motif:HMM:NF015284.2
L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha
GO:0008934 - inositol monophosphate 1-phosphatase activity [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]
GO:0006020 - inositol metabolic process [Evidence IEA]; GO:0046855 - inositol phosphate dephosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:NF024873.2
ribonuclease H-like domain-containing protein
COORDINATES: protein motif:HMM:TIGR00738.1
GO:0070402 - NADPH binding [Evidence IEA]; GO:0003960 - NADPH:quinone reductase activity [Evidence IEA]; GO:0016491 - oxidoreductase activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
NADPH:quinone oxidoreductase family protein
COORDINATES: protein motif:HMM:NF019342.2
gamma-glutamyl-gamma-aminobutyrate hydrolase family protein
COORDINATES: protein motif:HMM:NF014234.2
COORDINATES: protein motif:HMM:TIGR02666.1
GO:0051539 - 4 iron, 4 sulfur cluster binding [Evidence IEA]
GO:0000156 - phosphorelay response regulator activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF017917.2
COORDINATES: protein motif:HMM:NF005214.0
COORDINATES: protein motif:HMM:NF014193.2
COORDINATES: protein motif:HMM:TIGR02891.1
GO:0004129 - cytochrome-c oxidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR02866.1
COORDINATES: protein motif:HMM:TIGR01473.1
GO:0008495 - protoheme IX farnesyltransferase activity [Evidence IEA]
GO:0048034 - heme O biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014665.2
GO:0006784 - heme A biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014625.2
COORDINATES: similar to AA sequence:RefSeq:WP_011285255.1
COORDINATES: protein motif:HMM:NF013085.2
COORDINATES: similar to AA sequence:RefSeq:WP_003049878.1
GO:0033862 - UMP kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00496.1
GO:0008135 - translation factor activity, RNA binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF013327.2
GO:0004605 - phosphatidate cytidylyltransferase activity [Evidence IEA]
GO:0016024 - CDP-diacylglycerol biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF014657.2
COORDINATES: similar to AA sequence:RefSeq:WP_000290472.1
COORDINATES: protein motif:HMM:TIGR00747.1
COORDINATES: protein motif:HMM:TIGR00128.1
GO:0004314 - [acyl-carrier-protein] S-malonyltransferase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_002442508.1
GO:0004316 - 3-oxoacyl-[acyl-carrier-protein] reductase (NADPH) activity [Evidence IEA]
3-oxoacyl-[acyl-carrier-protein] reductase
COORDINATES: similar to AA sequence:RefSeq:WP_007830471.1
GO:0000036 - acyl carrier activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF005589.0
GO:0004315 - 3-oxoacyl-[acyl-carrier-protein] synthase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_015384397.1
GO:0004124 - cysteine synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF014679.2
GO:0005504 - fatty acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00368.1
YifB family Mg chelatase-like AAA ATPase
COORDINATES: protein motif:HMM:NF012720.2
COORDINATES: protein motif:HMM:NF022920.2
COORDINATES: protein motif:HMM:TIGR01451.2
COORDINATES: protein motif:HMM:NF003215.0
pyridoxal 5'-phosphate synthase lyase subunit PdxS
COORDINATES: protein motif:HMM:TIGR01245.1
GO:0004048 - anthranilate phosphoribosyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00566.1
GO:0046820 - 4-amino-4-deoxychorismate synthase activity [Evidence IEA]; GO:0004049 - anthranilate synthase activity [Evidence IEA]
aminodeoxychorismate/anthranilate synthase component II
COORDINATES: protein motif:HMM:TIGR00564.1
GO:0004049 - anthranilate synthase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001753.0
COORDINATES: protein motif:HMM:NF013741.2
COORDINATES: protein motif:HMM:NF013843.2
GO:0005524 - ATP binding [Evidence IEA]; GO:0019136 - deoxynucleoside kinase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF001126.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0016874 - ligase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]; GO:0051301 - cell division [Evidence IEA]; GO:0008360 - regulation of cell shape [Evidence IEA]
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase
COORDINATES: protein motif:HMM:NF015049.2
COORDINATES: protein motif:HMM:NF022630.2
GO:0042121 - alginic acid biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF004490.0
GO:0006206 - pyrimidine nucleobase metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF025819.2
COORDINATES: protein motif:HMM:NF013677.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF012870.2
GO:0015074 - DNA integration [Evidence IEA]
DDE-type integrase/transposase/recombinase
COORDINATES: protein motif:HMM:NF004281.0
GO:0008641 - ubiquitin-like modifier activating enzyme activity [Evidence IEA]
molybdopterin-synthase adenylyltransferase MoeB
COORDINATES: protein motif:HMM:NF012407.2
isocitrate/isopropylmalate dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_012492354.1
internal stop; incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
permease-like cell division protein FtsX
COORDINATES: protein motif:HMM:NF012437.2
GO:0009190 - cyclic nucleotide biosynthetic process [Evidence IEA]; GO:0035556 - intracellular signal transduction [Evidence IEA]
adenylate/guanylate cyclase domain-containing protein
COORDINATES: protein motif:HMM:NF018049.2
COORDINATES: protein motif:HMM:NF006679.0
GO:0008892 - guanine deaminase activity [Evidence IEA]
GO:0006147 - guanine catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF013670.2
GO:0046872 - metal ion binding [Evidence IEA]; GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF025179.2
COORDINATES: protein motif:HMM:TIGR03026.1
UDP-glucose/GDP-mannose dehydrogenase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_017944086.1
GO:0008446 - GDP-mannose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR03022.1
undecaprenyl-phosphate galactose phosphotransferase WbaP
COORDINATES: similar to AA sequence:RefSeq:WP_016283109.1
GO:0008879 - glucose-1-phosphate thymidylyltransferase activity [Evidence IEA]
GO:0019305 - dTDP-rhamnose biosynthetic process [Evidence IEA]; GO:0009243 - O antigen biosynthetic process [Evidence IEA]
glucose-1-phosphate thymidylyltransferase RfbA
COORDINATES: protein motif:HMM:NF013103.2
dTDP-4-dehydrorhamnose 3,5-epimerase family protein
COORDINATES: protein motif:HMM:TIGR01181.1
GO:0008460 - dTDP-glucose 4,6-dehydratase activity [Evidence IEA]
COORDINATES: protein motif:HMM:NF011409.0
COORDINATES: protein motif:HMM:NF013727.2
COORDINATES: protein motif:HMM:NF017964.2
glycogen debranching N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF022596.2
choice-of-anchor D domain-containing protein
COORDINATES: protein motif:HMM:NF018613.2
COORDINATES: protein motif:HMM:NF025559.2
L-2-amino-thiazoline-4-carboxylic acid hydrolase
COORDINATES: protein motif:HMM:NF017633.2
GO:0004497 - monooxygenase activity [Evidence IEA]
GO:0030170 - pyridoxal phosphate binding [Evidence IEA]; GO:0008483 - transaminase activity [Evidence IEA]
aminotransferase class III-fold pyridoxal phosphate-dependent enzyme
COORDINATES: protein motif:HMM:NF021524.2
COORDINATES: protein motif:HMM:NF041518.1
choice-of-anchor Q domain-containing protein
COORDINATES: protein motif:HMM:NF015411.2
COORDINATES: protein motif:HMM:NF026183.2
sulfotransferase domain-containing protein
COORDINATES: protein motif:HMM:NF024736.2
frameshifted; internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_005920153.1
GO:0016887 - ATP hydrolysis activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]
60 kDa chaperone family; promotes refolding of misfolded polypeptides especially under stressful conditions; forms two stacked rings of heptamers to form a barrel-shaped 14mer; ends can be capped by GroES; misfolded proteins enter the barrel where they are refolded when GroES binds; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_003966899.1
COORDINATES: protein motif:HMM:NF016798.2
COORDINATES: protein motif:HMM:NF020039.2
SMP-30/gluconolactonase/LRE family protein
COORDINATES: protein motif:HMM:NF011291.0
GO:0005524 - ATP binding [Evidence IEA]; GO:0004819 - glutamine-tRNA ligase activity [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]
GO:0006425 - glutaminyl-tRNA aminoacylation [Evidence IEA]
glutamine--tRNA ligase/YqeY domain fusion protein
COORDINATES: protein motif:HMM:NF013528.2
COORDINATES: protein motif:HMM:NF012885.2
COORDINATES: protein motif:HMM:TIGR00634.1
COORDINATES: protein motif:HMM:TIGR01976.1
COORDINATES: similar to AA sequence:RefSeq:WP_010081311.1
COORDINATES: protein motif:HMM:NF012339.2
GO:0009055 - electron transfer activity [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]
2Fe-2S iron-sulfur cluster-binding protein
COORDINATES: protein motif:HMM:NF025042.2
COORDINATES: protein motif:HMM:NF040082.1
COORDINATES: protein motif:HMM:NF015747.2
polysaccharide biosynthesis tyrosine autokinase
COORDINATES: protein motif:HMM:TIGR00174.1
GO:0052381 - tRNA dimethylallyltransferase activity [Evidence IEA]
tRNA (adenosine(37)-N6)-dimethylallyltransferase MiaA
COORDINATES: similar to AA sequence:RefSeq:WP_016176834.1
GO:0016987 - sigma factor activity [Evidence IEA]
GO:0006352 - DNA-templated transcription initiation [Evidence IEA]
COORDINATES: protein motif:HMM:NF001263.0
GO:0003677 - DNA binding [Evidence IEA]; GO:0070063 - RNA polymerase binding [Evidence IEA]
GO:0032784 - regulation of DNA-templated transcription elongation [Evidence IEA]
COORDINATES: protein motif:HMM:NF013440.2
COORDINATES: protein motif:HMM:TIGR00499.1
GO:0004824 - lysine-tRNA ligase activity [Evidence IEA]
GO:0006430 - lysyl-tRNA aminoacylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01695.1
GO:0034204 - lipid translocation [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
murein biosynthesis integral membrane protein MurJ
COORDINATES: protein motif:HMM:NF006189.0
bifunctional rhamnulose-1-phosphate aldolase/short-chain dehydrogenase
COORDINATES: protein motif:HMM:NF014628.2
COORDINATES: protein motif:HMM:TIGR00273.1
GO:0019516 - lactate oxidation [Evidence IEA]
LutB/LldF family L-lactate oxidation iron-sulfur protein
COORDINATES: protein motif:HMM:TIGR02635.1
GO:0008740 - L-rhamnose isomerase activity [Evidence IEA]
GO:0019299 - rhamnose metabolic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017375425.1
pyridoxal phosphate-dependent aminotransferase
COORDINATES: similar to AA sequence:RefSeq:WP_002859435.1
GO:0004550 - nucleoside diphosphate kinase activity [Evidence IEA]
GO:0006165 - nucleoside diphosphate phosphorylation [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01770.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]; GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0016655 - oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR01972.1
COORDINATES: protein motif:HMM:NF005141.0
COORDINATES: similar to AA sequence:RefSeq:WP_018036038.1
GO:0016651 - oxidoreductase activity, acting on NAD(P)H [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoK
COORDINATES: protein motif:HMM:NF012709.2
GO:0008137 - NADH dehydrogenase (ubiquinone) activity [Evidence IEA]; GO:0048038 - quinone binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF004537.0
NADH-quinone oxidoreductase subunit NuoI
COORDINATES: protein motif:HMM:NF004741.0
NADH-quinone oxidoreductase subunit NuoH
COORDINATES: protein motif:HMM:TIGR01973.1
GO:0050136 - NADH dehydrogenase (quinone) activity [Evidence IEA]
GO:0006120 - mitochondrial electron transport, NADH to ubiquinone [Evidence IEA]
NADH-quinone oxidoreductase subunit NuoG
COORDINATES: protein motif:HMM:TIGR01959.1
NADH-quinone oxidoreductase subunit NuoF
COORDINATES: protein motif:HMM:TIGR01958.1
NAD(P)H-dependent oxidoreductase subunit E
COORDINATES: protein motif:HMM:TIGR01962.1
COORDINATES: protein motif:HMM:NF012549.2
COORDINATES: similar to AA sequence:RefSeq:WP_000236330.1
COORDINATES: protein motif:HMM:NF012717.2
COORDINATES: protein motif:HMM:NF003916.0
GO:0016615 - malate dehydrogenase activity [Evidence IEA]
GO:0006108 - malate metabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF018290.2
COORDINATES: protein motif:HMM:NF014575.2
GO:0008649 - rRNA methyltransferase activity [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR00136.1
GO:0008033 - tRNA processing [Evidence IEA]; GO:0002098 - tRNA wobble uridine modification [Evidence IEA]
tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG