Aeromonas caviae strain WP8-S18-ESBL-04 plasmid pWP8-S18-ESBL-04_1, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.
complete genome sequences of Aeromonas caviae str. WP8-S18-ESBL-04 isolated from wastewater treatment plant effluent
Submitted (04-DEC-2019) Contact:Tsuyoshi Sekizuka National Institute of Infectious Diseases, Pathogen Genomics Center; 1-23-1 Toyama, Shinjuku-ku, Tokyo 162-8640, Japan
REFSEQ INFORMATION: The reference sequence is identical to\nAP022255.1.\nAnnotated by DFAST v.1.2.3 (https://dfast.nig.ac.jp).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: flye v2.5; minimap v0.2-r124; racon\n v1.1.0; circlator v1.5.3; Pilon v1.18;\n SPAdes v3.11.1; A5-miseq v20140604\nGenome Coverage :: 234x\nSequencing Technology :: Sequel; NextSeq 500\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 03/26/2023 05:31:17\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,252\nCDSs (total) :: 4,094\nGenes (coding) :: 4,037\nCDSs (with protein) :: 4,037\nGenes (RNA) :: 158\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 122\nncRNAs :: 5\nPseudo Genes (total) :: 57\nCDSs (without protein) :: 57\nPseudo Genes (ambiguous residues) :: 0 of 57\nPseudo Genes (frameshifted) :: 17 of 57\nPseudo Genes (incomplete) :: 35 of 57\nPseudo Genes (internal stop) :: 12 of 57\nPseudo Genes (multiple problems) :: 5 of 57\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_019841203.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_017413162.1
transglycosylase SLT domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_005321058.1
COORDINATES: similar to AA sequence:RefSeq:WP_019841184.1
GO:0051495 - positive regulation of cytoskeleton organization [Evidence IEA]
type IV toxin-antitoxin system YeeU family antitoxin
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_011899461.1
COORDINATES: similar to AA sequence:RefSeq:WP_006322813.1
COORDINATES: protein motif:HMM:NF023505.2
COORDINATES: similar to AA sequence:RefSeq:WP_011898725.1
COORDINATES: similar to AA sequence:RefSeq:WP_006087368.1
COORDINATES: similar to AA sequence:RefSeq:WP_007853469.1
COORDINATES: similar to AA sequence:RefSeq:WP_005352036.1
translesion error-prone DNA polymerase V autoproteolytic subunit
COORDINATES: similar to AA sequence:RefSeq:WP_005906214.1
GO:0003684 - damaged DNA binding [Evidence IEA]
translesion error-prone DNA polymerase V subunit UmuC
COORDINATES: similar to AA sequence:RefSeq:WP_018403111.1
COORDINATES: similar to AA sequence:RefSeq:WP_012755126.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_001672025.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_021141233.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_010676207.1
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011899418.1
COORDINATES: similar to AA sequence:RefSeq:WP_019841198.1
GO:0006355 - regulation of DNA-templated transcription [Evidence IEA]
H-NS family nucleoid-associated regulatory protein
COORDINATES: similar to AA sequence:RefSeq:WP_031587700.1
IS1380-like element ISEcp1 family transposase
COORDINATES: similar to AA sequence:RefSeq:WP_011091028.1
extended-spectrum class A beta-lactamase CTX-M-3
COORDINATES: similar to AA sequence:RefSeq:WP_016943399.1
COORDINATES: similar to AA sequence:RefSeq:WP_011899423.1
COORDINATES: protein motif:HMM:TIGR00180.1
GO:0007059 - chromosome segregation [Evidence IEA]; GO:0000910 - cytokinesis [Evidence IEA]
ParB/RepB/Spo0J family partition protein
COORDINATES: protein motif:HMM:NF013793.2
COORDINATES: protein motif:HMM:NF027824.2
COORDINATES: similar to AA sequence:RefSeq:WP_005320933.1
PAS and helix-turn-helix domain-containing protein
COORDINATES: protein motif:HMM:NF017333.2
COORDINATES: similar to AA sequence:RefSeq:WP_017412447.1
type IV conjugative transfer system pilin TraA
COORDINATES: similar to AA sequence:RefSeq:WP_032490353.1
type IV conjugative transfer system protein TraL
COORDINATES: similar to AA sequence:RefSeq:WP_006705926.1
type IV conjugative transfer system protein TraE
COORDINATES: similar to AA sequence:RefSeq:WP_017412450.1
type-F conjugative transfer system secretin TraK
COORDINATES: similar to AA sequence:RefSeq:WP_017412451.1
F-type conjugal transfer pilus assembly protein TraB
COORDINATES: similar to AA sequence:RefSeq:WP_017412452.1
type IV conjugative transfer system lipoprotein TraV
COORDINATES: similar to AA sequence:RefSeq:WP_017412454.1
COORDINATES: similar to AA sequence:RefSeq:WP_017412455.1
type-F conjugative transfer system protein TrbI
COORDINATES: similar to AA sequence:RefSeq:WP_020314628.1
type-F conjugative transfer system protein TraW
COORDINATES: similar to AA sequence:RefSeq:WP_000986294.1
conjugal transfer pilus assembly protein TraU
COORDINATES: similar to AA sequence:RefSeq:WP_005320896.1
type-F conjugative transfer system pilin assembly protein TrbC
COORDINATES: similar to AA sequence:RefSeq:WP_000821868.1
type-F conjugative transfer system mating-pair stabilization protein TraN
COORDINATES: similar to AA sequence:RefSeq:WP_017412462.1
type-F conjugative transfer system pilin assembly protein TraF
COORDINATES: similar to AA sequence:RefSeq:WP_017412463.1
type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB
COORDINATES: similar to AA sequence:RefSeq:WP_017412464.1
conjugal transfer pilus assembly protein TraH
COORDINATES: protein motif:HMM:NF010295.2
conjugal transfer mating-pair stabilization protein TraG
conjugal transfer entry exclusion protein TraS
COORDINATES: similar to AA sequence:RefSeq:WP_005322181.1
GO:0019867 - outer membrane [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_017412857.1
type IV conjugative transfer system coupling protein TraD
COORDINATES: similar to AA sequence:RefSeq:WP_017412856.1
GO:0005524 - ATP binding [Evidence IEA]; GO:0003677 - DNA binding [Evidence IEA]; GO:0003678 - DNA helicase activity [Evidence IEA]; GO:0016818 - hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides [Evidence IEA]
conjugative transfer relaxase/helicase TraI