Plasmodium gaboni strain SY75 chromosome 14, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (17-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003869.\nAssembly created using Velvet Columbus followed by SSPACE followed\nby PAGIT and GapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; SSPACE v. 2.0; PAGIT v.\n 1; GapFiller v. 1.11\nGenome Coverage :: 90x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
Plasmodium exported protein, unknown function
conserved Plasmodium protein, unknown function
putative U1 small nuclear ribonucleoprotein C
putative ubiquitin-40S ribosomal protein S27a
similar to DNA sequence:PlasmoDB:PF3D7_1402600
putative U2 snRNP-associated SURP motif-containing protein
Contains in-frame UGA selenocysteine codon
putative translocation associated membrane protein
putative DNA-directed RNA polymerase II subunit RPB4
putative mitochondrial ribosomal protein L16 precursor
encoded by transcript variant 1; alternatively spliced
transcript variant 1; alternatively spliced
encoded by transcript variant 3; alternatively spliced
transcript variant 3; alternatively spliced
encoded by transcript variant 2; alternatively spliced
transcript variant 2; alternatively spliced
putative trafficking protein particle complex subunit 1
putative COBW domain-containing protein 1
putative large subunit rRNA processing protein
putative vacuolar protein sorting-associated protein 29
glideosome associated protein with multiple membrane spans 3
putative tRNA m2G10 methyltransferase subunit
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
conserved Plasmodium membrane protein, unknown function
cytidine diphosphate-diacylglycerol synthase
putative tetratricopeptide repeat family protein
putative eukaryotic translation initiation factor 2 gamma subunit
putative ribosome maturation protein SBDS
conserved Plasmodium membrane protein, unknown function; transcript variant 1; alternatively spliced
conserved Plasmodium membrane protein, unknown function; transcript variant 2; alternatively spliced
glycylpeptide N-tetradecanoyltransferase
hypothetical protein; ortholog of PF3D7_1413700; may be nonfunctional due to frameshift or this may be assembler error in polyA
putative 26S proteasome regulatory subunit RPN13
serine/threonine protein phosphatase PP1
putative atypical protein kinase, ABC-1 family
putative ubiquitin carboxyl-terminal hydrolase
putative small nuclear ribonucleoprotein-associated protein B
putative DNA-directed RNA polymerase I/III subunit
root hair defective 3 GTP-binding protein-like protein
putative cyclic nucleotide-binding protein
putative H/ACA ribonucleoprotein complex subunit 4
putative ubiquitin fusion degradation protein UFD1
similar to DNA sequence:PlasmoDB:PF3D7_1418500
putative DEAD/DEAH box ATP-dependent RNA helicase
gap found within coding sequence; ortholog of PF3D7_1420600
part of same gene as PGSY75_1420600A; gap found within coding sequence
part of same gene as PGSY75_1420600B; gap found within coding sequence
putative mannose-1-phosphate guanyltransferase
similar to DNA sequence:PlasmoDB:PF3D7_1421150
putative DNA-directed RNA polymerase III subunit C
putative mitochondrial import inner membrane translocase subunit TIM8
putative mitochondrial ribosomal protein L21 precursor
ERAD-associated E3 ubiquitin-protein ligase HRD1
gap found within coding sequence; ortholog of PF3D7_1423300
part of same gene as PGSY75_1423300B; gap found within coding sequence
part of same gene as PGSY75_1423300A; gap found within coding sequence
similar to DNA sequence:PlasmoDB:PF3D7_1423500
gap found within coding sequence; ortholog of PF3D7_1423600
putative calcium-dependent protein kinase
part of same gene as PGSY75_1423600B; gap found within coding sequence
part of same gene as PGSY75_1423600A; gap found within coding sequence
gap found within coding sequence; ortholog of PF3D7_1423800
putative vacuolar protein sorting-associated protein 3
part of same gene as PGSY75_1423800B; gap found within coding sequence
part of same gene as PGSY75_1423800A; gap found within coding sequence
similar to DNA sequence:PlasmoDB:PF3D7_1424200
similar to DNA sequence:PlasmoDB:PF3D7_1424300
similar to DNA sequence:PlasmoDB:PF3D7_1424500
similar to DNA sequence:PlasmoDB:PF3D7_1424600
similar to DNA sequence:PlasmoDB:PF3D7_1424700
similar to DNA sequence:PlasmoDB:PF3D7_1424900
similar to DNA sequence:PlasmoDB:PF3D7_1425100
similar to DNA sequence:PlasmoDB:PF3D7_1425500
ATP-binding cassette sub-family G member 2
putative ubiquinol-cytochrome c reductase hinge protein
putative DNA mismatch repair protein MSH2
putative exosome complex exonuclease RRP41
putative proliferation-associated protein 2g4
putative transcription initiation TFIID-like
putative apicoplast ribosomal protein L15 precursor
putative transcription factor with AP2 domain(s)
putative rRNA (adenosine-2'-O-)-methyltransferase
putative mitochondrial ribosomal protein L15 precursor
serine/threonine protein phosphatase 2A activator
gap found within coding sequence; ortholog of PF3D7_1430200
part of same gene as PGSY75_1430200B; gap found within coding sequence
part of same gene as PGSY75_1430200A; gap found within coding sequence
putative mitochondrial ribosomal protein L17-2 precursor
putative large ribosomal subunit associated GTPase
putative ATP-specific succinyl-CoA synthetase beta subunit
putative voltage-dependent anion-selective channel protein
putative protein-L-isoaspartate(D-aspartate) O- methyltransferase
putative chromatin assembly factor 1 P55 subunit
putative microsomal signal peptidase protein
protein kinase, putative; ortholog of PF3D7_1433900; deletion, multiple frameshifts and stop codons
similar to DNA sequence:PlasmoDB:PF3D7_1433900
putative queuine tRNA-ribosyltransferase
putative mitochondrial import inner membrane translocase subunit TIM17
putative mitochondrial acidic protein MAM33
putative cytochrome c oxidase assembly protein
putative NAD(P)H-dependent glutamate synthase
ATP-dependent Clp protease proteolytic subunit
putative ribonucleoside-diphosphate reductase, large subunit
putative eukaryotic translation initiation factor eIF2A
putative cleavage and polyadenylation specificity factor
putative ubiquinol-cytochrome c reductase iron-sulfur subunit
putative CCAAT-binding transcription factor
putative leucine carboxyl methyltransferase
putative vesicle-associated membrane protein
ortholog of PF3D7_1440200; the first two exons contain an apicoplast-targeting presequence and are shared by the gene immediately upstream, PGSY75_1440300
ortholog of PF3D7_1440300; the first two exons contain an apicoplast-targeting presequence and are shared by the gene immediately downstream, PGSY75_1440200
putative serine/threonine protein kinase
putative transcription factor TFIIH complex subunit Tfb5
putative protein prenyltransferase alpha subunit
putative U6 snRNA-associated Sm-like protein LSm5
putative poly(A)-specific ribonuclease PARN
gap found within coding sequence; ortholog of PF3D7_1444100
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1444100A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1444100B; gap found within coding sequence
putative 1-acyl-sn-glycerol-3-phosphate acyltransferase
eukaryotic initiation factor 2alpha kinase 1
putative mitochondrial ribosomal protein S29 precursor
putative ATP-dependent RNA helicase DDX5
similar to DNA sequence:PlasmoDB:PF3D7_1446000
pyruvate dehydrogenase E1 component subunit beta
putative glutaminyl-peptide cyclotransferase
putative mitochondrial ribosomal protein S14 precursor
calponin homology domain-containing protein, putative
multidrug resistance protein 2 (heavy metal transport family)
putative U3 snoRNA-associated small subunit rRNA processing protein
putative gamete egress and sporozoite traversal protein
putative transcription factor IIIb subunit
putative DNA replication related protein
hypothetical protein; ortholog of PF3D7_1449600; may be nonfunctional due to frameshift or this may be assembler error
similar to DNA sequence:PlasmoDB:PF3D7_1449600
signal recognition particle subunit SRP54
putative DNA polymerase delta interacting protein
transcriptional regulatory protein sir2b
putative protein phosphatase 2b regulatory subunit
putative small subunit rRNA processing factor
putative pyridine nucleotide transhydrogenase
glucose-6-phosphate dehydrogenase-6- phosphogluconolactonase
putative mitochondrial ribosomal protein S11 precursor
putative 6-phosphogluconate dehydrogenase, decarboxylating
gap found within coding sequence; ortholog of PF3D7_1455900
part of same gene as PGSY75_1455900A; gap found within coding sequence
part of same gene as PGSY75_1455900B; gap found within coding sequence
putative serine hydroxymethyltransferase
putative mitochondrial ribosomal protein L28 precursor
putative V-type H(+)-translocating pyrophosphatase
vacuolar protein sorting-associated protein 4
putative large ribosomal subunit nuclear export factor
putative spindle assembly abnormal protein 4
putative pyridoxal 5'-phosphate synthase
FYVE and coiled-coil domain-containing protein
ubiquitin carboxyl-terminal hydrolase isozyme L3
putative inner membrane complex sub-compartment protein 3
putative snRNA-activating protein complex subunit 3
putative apicoplast ribosomal protein S10 precursor
putative meiotic nuclear division protein 1
putative U3 small nucleolar ribonucleoprotein IMP3
glyceraldehyde-3-phosphate dehydrogenase
hypothetical protein; ortholog of PF3D7_1463100
putative DNA-directed RNA polymerase III subunit RPC4
putative mitochondrial ribosomal protein S6-2 precursor
similar to DNA sequence:PlasmoDB:PF3D7_1464400
putative ATP-dependent zinc metalloprotease FTSH
putative kelch-like domain-containing protein phosphatase
putative 26S proteasome regulatory subunit RPN2
putative large ribosomal subunit assembling protein
putative DNA-3-methyladenine glycosylase
1-deoxy-D-xylulose 5-phosphate reductoisomerase
putative 50S ribosomal protein L22, apicoplast
putative splicing factor U2AF large subunit
putative translation initiation factor IF-1
putative shewanella-like protein phosphatase 1
putative small subunit rRNA processing KH domain protein
putative biotin carboxylase subunit of acetyl CoA carboxylase
putative mediator of RNA polymerase II transcription subunit 6
putative mitochondrial pyruvate carrier protein 2
putative RNA 3'-terminal phosphate cyclase-like protein
inorganic anion exchanger, inorganic anion antiporter
putative M1-family alanyl aminopeptidase
putative DNA-directed RNA polymerase, alpha subunit
putative mitochondrial ribosomal protein L20 precursor
putative DNA repair metallo-beta-lactamase protein
putative proteasome subunit alpha type-1
putative cytochrome c oxidase assembly protein COX11
serine/threonine protein kinase, FIKK family
surface-associated interspersed protein 14.1 (SURFIN 14.1)