Plasmodium gaboni strain SY75 chromosome 13, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (17-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003868.\nAssembly created using Velvet Columbus followed by SSPACE followed\nby PAGIT and GapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; SSPACE v. 2.0; PAGIT v.\n 1; GapFiller v. 1.11\nGenome Coverage :: 90x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
surface-associated interspersed protein 13.1 (SURFIN 13.1)
Plasmodium exported protein, unknown function
conserved Plasmodium membrane protein, unknown function
conserved Plasmodium protein, unknown function
putative DEAD/DEAH box ATP-dependent RNA helicase
encoded by transcript variant 2; alternatively spliced
encoded by transcript variant 1; alternatively spliced
transcript variant 2; alternatively spliced
transcript variant 1; alternatively spliced
sodium/hydrogen exchanger, Na+, H+ antiporter
putative chromosome condensation protein
putative CorA-like Mg2+ transporter protein
similar to DNA sequence:PlasmoDB:PF3D7_1304800
putative mitogen-activated protein kinase phosphatase 1
putative membrane integral peptidase, M50 family
putative SAM dependent methyltransferase
putative 26S protease regulatory subunit 10B
putative vacuolar ATP synthase subunit h
putative U1 small nuclear ribonucleoprotein A
putative exosome complex component RRP40
putative U3 small nucleolar RNA-associated protein 6
putative DNA-directed RNA polymerase alpha chain
putative CCAAT-binding transcription factor
similar to DNA sequence:PlasmoDB:PF3D7_1309120
gap found within coding sequence; ortholog of PF3D7_1309200
putative protein phosphatase 2c-like protein
part of same gene as PGSY75_1309200B; gap found within coding sequence
part of same gene as PGSY75_1309200A; gap found within coding sequence
putative U4/U6 small nuclear ribonucleoprotein PRP3
putative ribosomal RNA methyltransferase
putative vacuolar protein sorting-associated protein 18
putative mitochondrial ATP synthase delta subunit
putative mitochondrial ribosomal protein S15 precursor
ATP synthase subunit gamma, mitochondrial
putative 26S protease regulatory subunit 7
malonyl CoA-acyl carrier protein transacylase precursor
putative mitochondrial ribosomal protein S35 precursor
putative translation initiation factor IF-2
putative 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
putative eukaryotic translation initiation factor 4 gamma
ubiquitin-like protein nedd8-like protein
putative methionyl-tRNA formyltransferase
putative peptidyl-prolyl cis-trans isomerase
septum formation protein MAF-like protein
putative telomerase reverse transcriptase
putative cop-coated vesicle membrane protein p24 precursor
putative TFIIH basal transcription factor subunit
putative zinc finger (CCCH type) protein
putative tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61
putative protein transport protein SEC20
putative U4/U6.U5 tri-snRNP-associated protein 2
putative small ribosomal subunit nuclear export protein
putative glycerol-3-phosphate 1-O-acyltransferase
putative N2,N2-dimethylguanosine tRNA methyltransferase
putative protein phosphatase PP2A regulatory subunit A
putative ATP-dependent Clp protease adaptor protein ClpS
dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex
putative 3',5'-cyclic nucleotide phosphodiesterase
translation initiation factor EIF-2B subunit- like protein
glideosome associated protein with multiple membrane spans 1
putative vacuolar protein sorting-associated protein 52
putative micro-fibrillar-associated protein
gap found within coding sequence; ortholog of PF3D7_1324500
part of same gene as PGSY75_1324500A; gap found within coding sequence
part of same gene as PGSY75_1324500B; gap found within coding sequence
gap found within coding sequence; ortholog of PF3D7_1324800
dihydrofolate synthase/folylpolyglutamate synthase
part of same gene as PGSY75_1324800A; gap found within coding sequence
part of same gene as PGSY75_1324800B; gap found within coding sequence
putative U6 snRNA-associated Sm-like protein LSm6
putative mitochondrial fission 1 protein
putative translation initiation factor EIF-2B gamma subunit
putative ribonuclease P protein subunit RPR2
nicotinate-nucleotide adenylyltransferase
putative regulator of nonsense transcripts 3B
putative ribose-phosphate pyrophosphokinase
transcriptional regulatory protein sir2a
DNA-directed RNA polymerase 3 largest subunit
putative chromatin assembly factor 1 subunit
similar to DNA sequence:PlasmoDB:PF3D7_1329600
similar to DNA sequence:PlasmoDB:PF3D7_1330100
putative ER lumen protein retaining receptor 1
gap found within coding sequence; ortholog of PF3D7_1330700
part of same gene as PGSY75_1330700B; gap found within coding sequence
part of same gene as PGSY75_1330700A; gap found within coding sequence
similar to DNA sequence:PlasmoDB:PF3D7_1330900
putative trafficking protein particle complex subunit 2
putative SAM-dependent RNA methyltransferase
putative apurinic/apyrimidinic endonuclease Apn1
putative translation initiation factor 6
transmembrane protein Tmp21-like protein
putative U3 snoRNA-associated small subunit rRNA processing associated protein
histone H3-like centromeric protein CSE4
similar to DNA sequence:PlasmoDB:PF3D7_1336500
gap found within coding sequence; ortholog of PF3D7_1337100
part of same gene as PGSY75_1337100B; gap found within coding sequence
part of same gene as PGSY75_1337100A; gap found within coding sequence
putative 26S proteasome regulatory subunit RPN3
gap found within coding sequence; ortholog of PF3D7_1338400
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1338400A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1338400B; gap found within coding sequence
gap found within coding sequence; ortholog of PF3D7_1338800
part of same gene as PGSY75_1338800A; gap found within coding sequence
part of same gene as PGSY75_1338800B; gap found within coding sequence
putative serine/threonine protein kinase
gap found within coding sequence; ortholog of PF3D7_1339700
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1339700A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1339700B; gap found within coding sequence
similar to DNA sequence:PlasmoDB:PF3D7_1340000
exosome complex component RRP42, putative; interrupted by gap; ortholog of PF3D7_1340100; frameshift likely due to misassembly
putative vacuolar ATP synthase subunit d
putative tetratricopeptide repeat family protein
sporozoite protein essential for cell traversal
putative tRNA guanosine-2'-O-methyltransferase
putative UDP-N-acetylglucosamine pyrophosphorylase
putative U4/U6 small nuclear ribonucleoprotein PRP4
isocitrate dehydrogenase (NADP), mitochondrial precursor
gap found within coding sequence; ortholog of PF3D7_1345800
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1345800B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1345800A; gap found within coding sequence
protein transport protein SEC61 subunit alpha
ethanolamine-phosphate cytidylyltransferase
ortholog of PF3D7_1348600; may be nonfunctional due to missing exon 2, or may be assembler error
putative nucleoside diphosphate hydrolase
putative cytidine and deoxycytidylate deaminase
putative nucleolar preribosomal associated cytoplasmic ATPase
putative small nuclear ribonucleoprotein E
putative phosphatidylinositol transfer protein
putative membrane protein; ortholog of PF3D7_1351300; likely nonfunctional due to stop codon (in 90% of reads)
similar to DNA sequence:PlasmoDB:PF3D7_1351500
putative inner membrane complex protein 1f
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
putative ABC transporter, (heavy metal transporter family)
putative P-loop containing nucleoside triphosphate hydrolase
membrane associated histidine-rich protein
putative RNA polymerase II transcription factor B subunit 4
putative proteasome subunit alpha type-4
putative proteasome subunit alpha type-7
putative inositol-polyphosphate 5-phosphatase
putative large subunit rRNA methyltransferase
putative V-type proton ATPase 21 kDa proteolipid subunit
putative histone-lysine N-methyltransferase
putative NLI interacting factor-like phosphatase
putative mitochondrial import inner membrane translocase subunit TIM23
putative phosphatase 2A regulatory subunit-related protein
putative regulator of chromosome condensation
gap found within coding sequence; ortholog of PF3D7_1357600
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1357600B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1357600A; gap found within coding sequence
putative U3 snoRNA-associated small subunit rRNA processing protein
putative small subunit rRNA processing factor
putative riboflavin kinase / FAD synthase family protein
putative rRNA associated RNA binding protein
putative protein arginine N-methyltransferase 5
bifunctional polynucleotide phosphatase/kinase
putative mitochondrial ribosomal protein L9 precursor
unknown; annotated by similarity to unknown transcript annotated in Pf3D7
pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16
putative exosome complex component RRP45
hypothetical protein; ortholog of PF3D7_1364700
putative mitochondrial ribosomal protein S17 precursor
ortholog of PF3D7_1365200; may be truncated but this is likely assembler error
similar to DNA sequence:PlasmoDB:PF3D7_1365200
putative DNA topoisomerase VI, b subunit
signal recognition particle receptor alpha subunit
putative suppressor of kinetochore protein 1
putative U1 small nuclear ribonucleoprotein
putative ribosome biogenesis protein MRT4
putative 26S proteasome regulatory subunit RPN11
putative mitochondrial import inner membrane translocase subunit TIM9
putative glycosylphosphatidylinositol anchor attachment 1 protein
putative U2 small nuclear ribonucleoprotein A'
similar to DNA sequence:PlasmoDB:PF3D7_1370100
similar to DNA sequence:PlasmoDB:PF3D7_1370200
serine/threonine protein kinase, FIKK family; ortholog of PF3D7_1371700; may be nonfunctional due to frameshift