Plasmodium gaboni strain SY75 chromosome 11, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (17-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003866.\nAssembly created using Velvet Columbus followed by SSPACE followed\nby PAGIT and GapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; SSPACE v. 2.0; PAGIT v.\n 1; GapFiller v. 1.11\nGenome Coverage :: 90x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
DnaJ protein, putative; ortholog of PF3D7_1102200; multiple frameshifts and stop codons
Plasmodium exported protein, unknown function
conserved Plasmodium protein, unknown function
putative 60S acidic ribosomal protein P1
putative FeS cluster assembly protein SufD
putative CCR4-NOT transcription complex subunit 1
putative phenylalanyl-tRNA synthetase beta chain
encoded by transcript variant 2; alternatively spliced
encoded by transcript variant 1; alternatively spliced
transcript variant 2; alternatively spliced
transcript variant 1; alternatively spliced
putative calcium/calmodulin-dependent protein kinase
conserved Plasmodium membrane protein, unknown function
putative apicoplast ribosomal protein S15 precursor
putative dna2/nam7 helicase family member
putative U6 snRNA-associated Sm-like protein LSm4
gap found within coding sequence; ortholog of PF3D7_1107100
part of same gene as PGSY75_1107100B; gap found within coding sequence
part of same gene as PGSY75_1107100A; gap found within coding sequence
putative polyadenylate-binding protein-interacting protein 1
putative succinyl-CoA synthetase alpha subunit
endoplasmic reticulum-resident calcium binding protein
similar to DNA sequence:PlasmoDB:PF3D7_1109000
similar to DNA sequence:PlasmoDB:PF3D7_1109300
putative U3/U14 snoRNA-associated small subunit rRNA processing protein
similar to DNA sequence:PlasmoDB:PF3D7_1109500
similar to DNA sequence:PlasmoDB:PF3D7_1109600
similar to DNA sequence:PlasmoDB:PF3D7_1109700
similar to DNA sequence:PlasmoDB:PF3D7_1109800
putative vacuolar protein sorting-associated protein 35
putative mitochondrial ribosomal protein L11 precursor
putative endonuclease/exonuclease/phosphatase family protein
putative peptidyl-prolyl cis-trans isomerase
putative ubiquinone biosynthesis protein COQ4
putative ubiquitin domain-containing protein DSK2
similar to DNA sequence:PlasmoDB:PF3D7_1114300
unknown; annotated by similarity to unknown transcript annotated in Pf3D7
putative serine/threonine protein kinase
putative glycerol-3-phosphate dehydrogenase
similar to DNA sequence:PlasmoDB:PF3D7_1115300
putative transcription factor with AP2 domain(s)
guanine nucleotide-exchange factor SEC12
putative oligosaccharyl transferase STT3 subunit
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
putative haloacid dehalogenase-like hydrolase
putative box C/D snoRNP rRNA 2'-O-methylation factor
putative splicing factor U2AF small subunit
putative ATP-dependent zinc metalloprotease FTSH
putative alternative splicing factor ASF-1
gap found within coding sequence; ortholog of PF3D7_1120000
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1120000B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1120000A; gap found within coding sequence
putative alpha/beta hydrolase fold domain containing protein
WD domain, G-beta repeat-containing protein
putative translation elongation factor EF-1, subunit alpha
putative mitochondrial ribosomal protein L37
gap found within coding sequence; ortholog of PF3D7_1123900
part of same gene as PGSY75_1123900B; gap found within coding sequence
part of same gene as PGSY75_1123900A; gap found within coding sequence
putative endoplasmic reticulum oxidoreductin
putative neutral-sphingomyelinase activation factor protein
putative U6 snRNA-associated Sm-like protein LSm1
pyruvate dehydrogenase E1 component subunit alpha
putative nuclear preribosomal assembly protein
ortholog of PRCDC_1123300; Gene is present in PrCDC, and in PfIT, but not in Pf3D7
similar to DNA sequence:PlasmoDB:PF3D7_1124950
putative vacuolar membrane protein-related
putative mitochondrial import inner membrane translocase subunit TIM44
putative large ribosomal subunit processing factor
gap found within coding sequence; ortholog of PF3D7_1126700
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1126700A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1126700B; gap found within coding sequence
deoxyuridine 5'-triphosphate nucleotidohydrolase
putative CRAL/TRIO domain-containing protein
hypothetical protein; ortholog of PF3D7_1127800; multiple frameshifts and stop codons
putative cochaperone prefoldin complex subunit
putative multiprotein bridging factor type 1
gap found within coding sequence; ortholog of PF3D7_1128400
putative geranylgeranyl pyrophosphate synthase
part of same gene as PGSY75_1128400A; gap found within coding sequence
part of same gene as PGSY75_1128400B; gap found within coding sequence
putative CCR4-NOT transcription complex subunit 2
putative 26S proteasome regulatory subunit RPN7
putative A/G-specific adenine glycosylase
putative phosphatidylinositol-4-phosphate 5-kinase
putative phosphoacetylglucosamine mutase
similar to DNA sequence:PlasmoDB:PF3D7_1130310
putative 26S protease regulatory subunit 6a
gap found within coding sequence; ortholog of PF3D7_1130600
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1130600B; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1130600A; gap found within coding sequence
putative structural maintenance of chromosome protein
oxysterol-binding protein-related protein 2
mitochondrial ribosomal protein L2 precursor
conserved membrane protein, unknown function
putative RNA (uracil-5-)methyltransferase
putative DNA-directed RNA polymerase I subunit RPA2
encoded by transcript variant 3; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 3; alternatively spliced
hypothetical protein; ortholog of PF3D7_1135200
putative 3-oxo-5-alpha-steroid 4-dehydrogenase
putative signal recognition particle subunit SRP72
similar to DNA sequence:PlasmoDB:PF3D7_1137000
putative mitochondrial ribosomal protein S9 precursor
UVB-resistance protein UVR8-like protein
putative apicoplast ribosomal protein S14p/S29e precursor
putative vacuolar ATP synthase subunit f
putative P-loop containing nucleoside triphosphate hydrolase
putative phosphatidylinositol N- acetylglucosaminyltransferase subunit H
putative inner membrane complex protein 1b
similar to DNA sequence:PlasmoDB:PF3D7_1142200
putative translation initiation factor eIF-1A
putative mitochondrial large subunit ribosomal protein
putative ubiquitin activating enzyme (E1) subunit Aos1
putative apicoplast import protein Tic20
putative bicoid-interacting protein BIN3
putative nucleolar preribosomal assembly protein
putative farnesyltransferase beta subunit
putative mitochondrial ATP synthase delta subunit
gap found within coding sequence; ortholog of PF3D7_1147800
merozoite adhesive erythrocytic binding protein
part of same gene as PGSY75_1147800B.2, PGSY75_1147800B.1; gap found within coding sequence
part of same gene as PGSY75_1147800A, PGSY75_1147800B.2; transcript variant 1; alternatively spliced; gap found within coding sequence
part of same gene as PGSY75_1147800A, PGSY75_1147800B.1; transcript variant 2; alternatively spliced; gap found within coding sequence
serine/threonine protein kinase, FIKK family
ring-infected erythrocyte surface antigen 2
DnaJ protein, putative; pseudogene, homologous to PF3D7_1149600 (DnaJ protein, putative) but likely not ortholog