Plasmodium gaboni strain SY75 chromosome 10, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (17-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003865.\nAssembly created using Velvet Columbus followed by SSPACE followed\nby PAGIT and GapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; SSPACE v. 2.0; PAGIT v.\n 1; GapFiller v. 1.11\nGenome Coverage :: 90x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
acyl-CoA binding protein, isoform 1, ACBP1
encoded by transcript variant 1; alternatively spliced
transcript variant 1; alternatively spliced
acyl-CoA binding protein, isoform 2, ACBP2
conserved Plasmodium protein, unknown function
encoded by transcript variant 2; alternatively spliced
transcript variant 2; alternatively spliced
putative inner membrane complex protein 1c
putative U5 small nuclear ribonuclear protein
conserved Plasmodium membrane protein, unknown function
gap found within coding sequence; ortholog of PF3D7_1004700
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1004700A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1004700B; gap found within coding sequence
putative regulator of nonsense transcripts
gap found within coding sequence; ortholog of PF3D7_1006100
putative CCR4-NOT transcription complex subunit 5
part of same gene as PGSY75_1006100A; gap found within coding sequence
part of same gene as PGSY75_1006100B; gap found within coding sequence
gap found within coding sequence; ortholog of PF3D7_1007200
part of same gene as PGSY75_1007200A; gap found within coding sequence
part of same gene as PGSY75_1007200B; gap found within coding sequence
putative eukaryotic translation initiation factor 3 subunit 7
putative 26S protease regulatory subunit 4
putative zinc finger C-x8-C-x5-C-x3-H type
putative small subunit rRNA synthesis-associated protein
putative ribosomal protein L43, mitochondrial
putative succinate dehydrogenase subunit 4
putative eukaryotic translation initiation factor 2 beta subunit
putative dolichyl-phosphate-mannose protein mannosyltransferase
putative 50S ribosomal protein L22, mitochondrial
gap found within coding sequence; ortholog of PF3D7_1011000
putative inner membrane complex sub-compartment protein 1
part of same gene as PGSY75_1011000A; gap found within coding sequence
part of same gene as PGSY75_1011000B; gap found within coding sequence
putative ubiquinol-cytochrome c reductase complex subunit
hypoxanthine-guanine phosphoribosyltransferase
putative NLI interacting factor-like phosphatase
putative U3 snoRNA-associated small subunit rRNA processing protein
phosphoinositide-specific phospholipase C
putative initiation factor 2 subunit family
gap found within coding sequence; ortholog of PF3D7_1014000
part of same gene as PGSY75_1014000A; gap found within coding sequence
part of same gene as PGSY75_1014000B; gap found within coding sequence
ortholog of PF3D7_1014700; Starts late compared with Pf3D7
encoded by transcript variant 3; alternatively spliced
transcript variant 3; alternatively spliced
putative ribonucleotide reductase small subunit
ortholog of PF3D7_1016100; Starts late compared with Pf3D7
serine/threonine protein kinase, FIKK family
putative enoyl-CoA hydratase-related protein
putative haloacid dehalogenase-like hydrolase
putative 26S proteasome regulatory subunit p55
putative serine/threonine protein phosphatase 8
putative eukaryotic translation initiation factor subunit eIF2A
conserved Plasmodium membrane protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium membrane protein, unknown function; transcript variant 1; alternatively spliced
putative large subunit rRNA processing RRM protein
putative flagellar outer arm dynein-associated protein
putative cytoplasmic dynein intermediate chain
putative S-adenosyl-L-methionine-dependent methyltransferase
gap found within coding sequence; ortholog of PF3D7_1020700
part of same gene as PGSY75_1020700B; gap found within coding sequence
part of same gene as PGSY75_1020700A; gap found within coding sequence
dihydrolipoamide acyltransferase component E2
gap found within coding sequence; ortholog of PF3D7_1021800
part of same gene as PGSY75_1021800A; gap found within coding sequence
part of same gene as PGSY75_1021800B; gap found within coding sequence
conserved Plasmodium protein (10b antigen), unknown function
putative citrate synthase, mitochondrial precursor
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase
putative CDGSH iron-sulfur domain-containing protein
chromodomain-helicase-DNA-binding protein 1-like protein
putative glutamine--fructose-6-phosphate aminotransferase [isomerizing]
putative cytochrome c oxidase copper chaperone
cell division cycle protein 20-like protein
putative U3 small nucleolar ribonucleoprotein MPP10
putative mitochondrial ribosomal protein S22 precursor
putative nucleolar preribosomal assembly protein
gap found within coding sequence; ortholog of PF3D7_1028600
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1028600A; gap found within coding sequence
conserved Plasmodium protein, unknown function; part of same gene as PGSY75_1028600B; gap found within coding sequence
putative transcription elongation factor SPT4
putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP22
putative 26S proteasome regulatory subunit RPN9
25 kDa ookinete surface antigen precursor
putative ribosome maturation factor RimM
similar to DNA sequence:PlasmoDB:PF3D7_1032200
putative phosphatidylinositol N- acetylglucosaminyltransferase subunit A
putative RNA polymerase II-associated protein 1
S-adenosylmethionine decarboxylase/ornithine decarboxylase
putative apicoplast ribosomal protein L27 precursor
putative thioredoxin-like associated protein 2
flavoprotein subunit of succinate dehydrogenase
putative U2 snRNA/tRNA pseudouridine synthase
probable protein, unknown function; ortholog of PF3D7_1035100; may be nonfunctional due to frameshift or this may be assembler error in polyA
likely ortholog of PF3D7_1035700 but 6 other genes or fragments in bin are homologous to PF3D7_1035700 so uncertain
duffy binding-like merozoite surface protein
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
putative DNA polymerase zeta catalytic subunit
ADP/ATP transporter on adenylate translocase
Plasmodium exported protein, unknown function
PHIST domain- and DNaJ domain-containing RESA- like protein
gap found within coding sequence; ortholog of PF3D7_1039000
part of same gene as PGSY75_1039000B; gap found within coding sequence
part of same gene as PGSY75_1039000A; gap found within coding sequence