Plasmodium gaboni strain SY75 chromosome 9, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (17-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003864.\nAssembly created using Velvet Columbus followed by SSPACE followed\nby PAGIT and GapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; SSPACE v. 2.0; PAGIT v.\n 1; GapFiller v. 1.11\nGenome Coverage :: 90x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
Plasmodium exported protein, unknown function
serine/threonine protein kinase, FIKK family
encoded by transcript variant 1; alternatively spliced
transcript variant 1; alternatively spliced
conserved Plasmodium protein, unknown function
similar to DNA sequence:PlasmoDB:PF3D7_0903000
putative retrieval receptor for endoplasmic reticulum membrane proteins
conserved Plasmodium membrane protein, unknown function
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
encoded by transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
gap found within coding sequence; ortholog of PF3D7_0903700
part of same gene as PGSY75_0903700B; gap found within coding sequence
part of same gene as PGSY75_0903700A; gap found within coding sequence
putative signal peptidase complex subunit 3
ortholog of PF3D7_0904800; small fragment
transcript variant 2; alternatively spliced
encoded by transcript variant 3; alternatively spliced
transcript variant 3; alternatively spliced
putative beta subunit of coatomer complex
No significant pblast hit to Pf3D7, but similar to PVX_098740.1 (endonuclease/exonuclease/phosphatase domain containing protein) and collinear with it.
putative endonuclease/exonuclease/phosphatase domain- containing protein
putative vacuolar protein sorting-associated protein 46
dynein light intermediate chain 2, cytosolic
ATP-dependent protease ATPase subunit ClpY
putative translation initiation factor SUI1
putative subunit of proteaseome activator complex
putative apicoplast ribosomal protein L35 precursor
conserved Plasmodium membrane protein, unknown function; transcript variant 2; alternatively spliced
conserved Plasmodium membrane protein, unknown function; transcript variant 1; alternatively spliced
putative ribosomal RNA methyltransferase
putative GDP-fucose protein O-fucosyltransferase 2
putative subpellicular microtubule protein 1
putative small nuclear ribonucleoprotein Sm D3
putative cytosolic Fe-S cluster assembly factor NBP35
putative phosphatidylinositol N- acetylglucosaminyltransferase
putative 26S proteasome regulatory subunit RPN8
putative phospholipid or glycerol acyltransferase
hypothetical protein; ortholog of PF3D7_0916400; may be nonfunctional due to frameshift or this may be assembler error
similar to DNA sequence:PlasmoDB:PF3D7_0916400
putative pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43
gap found within coding sequence; ortholog of PF3D7_0918500
part of same gene as PGSY75_0918500B; gap found within coding sequence
part of same gene as PGSY75_0918500A; gap found within coding sequence
putative dolichyl-diphosphooligosaccharide--protein glycosyltransferase
putative pyridoxal 5'-phosphate dependent enzyme class III
putative regulator of chromosome condensation
putative long chain fatty acid elongation enzyme
gap found within coding sequence; ortholog of PF3D7_0920100
part of same gene as PGSY75_0920100A; gap found within coding sequence
part of same gene as PGSY75_0920100B; gap found within coding sequence
putative U4/U6 snRNA-associated-splicing factor
putative tetratricopeptide repeat family protein
putative nucleolar preribosomal assembly protein
3-oxoacyl-[acyl-carrier-protein] reductase
putative cyclin-dependent kinases regulatory subunit
similar to DNA sequence:PlasmoDB:PF3D7_0924400
putative telomeric repeat binding factor 1
putative alpha-tubulin N-acetyltransferase
gap found within coding sequence; ortholog of PF3D7_0925200
putative rRNA processing and telomere maintaining methyltransferase
part of same gene as PGSY75_0925200B; gap found within coding sequence
part of same gene as PGSY75_0925200A; gap found within coding sequence
putative glutamine-dependent NAD(+) synthetase
putative serine/threonine protein phosphatase 4
putative cytochrome c oxidase subunit 5B
putative cytochrome c oxidase subunit 6B
putative serine/threonine protein kinase
putative transcription initiation factor TFIID subunit 7
putative procollagen lysine 5-dioxygenase
ortholog of PF3D7_0930300; problems with assembly due to presence of second, divergent allele in sample
Contains in-frame UGA selenocysteine codon
gap found within coding sequence; ortholog of PF3D7_0932500
part of same gene as PGSY75_0932500A; gap found within coding sequence
part of same gene as PGSY75_0932500B; gap found within coding sequence
putative apicoplast ribosomal protein S6
similar to DNA sequence:PlasmoDB:PF3D7_0933100
similar to DNA sequence:PlasmoDB:PF3D7_0933200
putative gamma-tubulin complex component
putative mitochondrial-processing peptidase subunit beta
putative transcription factor with AP2 domain(s)
putative vacuolar ATP synthase subunit e
cAMP-dependent protein kinase catalytic subunit
putative U2 small nuclear ribonucleoprotein B''
putative vacuolar protein sorting-associated protein 33
putative phosphatidylinositol N- acetylglucosaminyltransferase subunit P