Plasmodium gaboni strain SY75 chromosome 6, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (17-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003861.\nAssembly created using Velvet Columbus followed by SSPACE followed\nby PAGIT and GapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; SSPACE v. 2.0; PAGIT v.\n 1; GapFiller v. 1.11\nGenome Coverage :: 90x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
similar to DNA sequence:PlasmoDB:PF3D7_0601800
conserved Plasmodium protein, unknown function
putative liver merozoite formation protein
dihydroorotate dehydrogenase, mitochondrial precursor
putative mitochondrial ribosomal protein L41
putative cyclin dependent kinase binding protein
gap found within coding sequence; ortholog of PF3D7_0605600
part of same gene as PGSY75_0605600A; gap found within coding sequence
part of same gene as PGSY75_0605600B; gap found within coding sequence
putative long chain polyunsaturated fatty acid elongation enzyme
putative ubiquitin-conjugating enzyme E2
putative polypyrimidine tract binding protein
putative translation initiation factor IF-2
gap found within coding sequence; ortholog of PF3D7_0607100
part of same gene as PGSY75_0607100B; gap found within coding sequence
part of same gene as PGSY75_0607100A; gap found within coding sequence
putative G-protein associated signal transduction protein
putative para-hydroxybenzoate--polyprenyltransferase
gap found within coding sequence; ortholog of PF3D7_0607600
putative spindle assembly abnormal protein 6
part of same gene as PGSY75_0607600A; gap found within coding sequence
part of same gene as PGSY75_0607600B; gap found within coding sequence
putative sorting assembly machinery 50 kDa subunit
putative proteasome subunit alpha type-2
similar to DNA sequence:PlasmoDB:PF3D7_0609100
putative mitochondrial cardiolipin synthase
putative mitochondrial ribosomal protein L19 precursor
unknown; annotated by similarity to unknown transcript annotated in Pf3D7
putative transcription elongation factor SPT5
gap found within coding sequence; ortholog of PF3D7_0611000
part of same gene as PGSY75_0611000A; gap found within coding sequence
part of same gene as PGSY75_0611000B; gap found within coding sequence
putative succinate dehydrogenase subunit 3
putative transcription factor with AP2 domain(s)
SWI/SNF-related matrix-associated actin- dependent regulator of chromatin
putative eukaryotic translation initiation factor 3 subunit L
putative nucleolar GTP-binding protein 1
putative apicoplast ribosomal protein L18 precursor
gap found within coding sequence; ortholog of PF3D7_0613900
part of same gene as PGSY75_0613900A; gap found within coding sequence
part of same gene as PGSY75_0613900B; gap found within coding sequence
putative thiamin-phosphate pyrophosphorylase
putative cytosolic Fe-S cluster assembly factor NAR1
conserved Plasmodium membrane protein, unknown function
ortholog of PF3D7_0615200; Missing last exon
putative GPI-anchored wall transfer protein 1
gap found within coding sequence; ortholog of PF3D7_0615400
part of same gene as PGSY75_0615400A; gap found within coding sequence
part of same gene as PGSY75_0615400B; gap found within coding sequence
putative RNA and export factor binding protein
putative mitochondrial import receptor subunit TOM40
putative trafficking protein particle complex subunit 6A
encoded by transcript variant 1; alternatively spliced
transcript variant 1; alternatively spliced
encoded by transcript variant 2; alternatively spliced
transcript variant 2; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
cell division cycle protein 48-like protein
putative cleavage stimulation factor subunit 1
putative mRNA binding PUM-HD domain protein-like protein
mRNA binding Pumilio-homology domain protein, putative
putative nascent polypeptide associated complex alpha chain
putative signal recognition particle subunit SRP68
conserved Apicomplexan protein, unknown function
gap found within coding sequence; ortholog of PF3D7_0623100
part of same gene as PGSY75_0623100A; gap found within coding sequence
part of same gene as PGSY75_0623100B; gap found within coding sequence
gap found within coding sequence; ortholog of PF3D7_0623500
part of same gene as PGSY75_0623500A; gap found within coding sequence
part of same gene as PGSY75_0623500B; gap found within coding sequence
gap found within coding sequence; ortholog of PF3D7_0623600
putative transcription or splicing factor-like protein
part of same gene as PGSY75_0623600B; gap found within coding sequence
part of same gene as PGSY75_0623600A; gap found within coding sequence
putative ATP dependent DEAD-box helicase
putative anaphase promoting complex subunit
putative N-acetylglucosaminylphosphatidylinositol deacetylase
hypothetical protein; ortholog of PF3D7_0624800; frameshift and stop codon
putative oxidoreductase, short-chain dehydrogenase family
3-oxoacyl-acyl-carrier protein synthase I/II
putative mitochondrial ribosomal protein L46 precursor
putative E3 ubiquitin-protein ligase RNF5
putative mitochondrial import inner membrane translocase subunit TIM22
putative ribonuclease P protein subunit p29
putative HECT-domain (ubiquitin-transferase)
putative choline/ethanolaminephosphotransferase
gap found within coding sequence; ortholog of PF3D7_0628400
conserved Plasmodium membrane protein, unknown function; part of same gene as PGSY75_0628400B; gap found within coding sequence
conserved Plasmodium membrane protein, unknown function; part of same gene as PGSY75_0628400A; gap found within coding sequence
putative glutamyl-tRNA(Gln) amidotransferase subunit B
gap found within coding sequence; ortholog of PF3D7_0628900
part of same gene as PGSY75_0628900B; gap found within coding sequence
part of same gene as PGSY75_0628900A; gap found within coding sequence
putative nicotinate phosphoribosyltransferase
putative phosphatidylcholine-sterol acyltransferase
putative sec14-like cytosolic factor or phosphatidylinositol/phosphatidylcholine transfer protein
putative DNA polymerase epsilon, catalytic subunit a
microtubule-associated protein ytm1-like protein
putative bifunctional methylenetetrahydrofolate dehydrogenase/cyclohydrolase
putative tetratricopeptide repeat protein
exported protein (PHISTb); ortholog of PF3D7_0631100; may be nonfunctional due to frameshift