Plasmodium gaboni strain SY75 chromosome 3, whole genome shotgun sequence.
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania).
Genomes of cryptic chimpanzee Plasmodium species reveal key evolutionary events leading to human malaria
Submitted (17-OCT-2016) National Center for Biotechnology Information, NIH, Bethesda, MD 20894, USA
Submitted (07-MAR-2016) Department of Medicine, Perelman School of Medicine, University of Pennsylvania, 409 Johnson Pavilion, 3610 Hamilton Walk, Philadelphia, PA 19104, USA
PROVISIONAL REFSEQ: This record has not yet been subject to final\nNCBI review. The reference sequence is identical to CM003858.\nAssembly created using Velvet Columbus followed by SSPACE followed\nby PAGIT and GapFiller.\n\n##Genome-Assembly-Data-START##\nAssembly Method :: Velvet v. 1.1.06; SSPACE v. 2.0; PAGIT v.\n 1; GapFiller v. 1.11\nGenome Coverage :: 90x\nSequencing Technology :: Illumina MiSeq\n##Genome-Assembly-Data-END##
serine/threonine protein kinase, FIKK family
Plasmodium exported protein, unknown function
conserved Plasmodium protein, unknown function
putative golgi organization and biogenesis factor
cytoadherence linked asexual protein 3.2
putative CDGSH iron-sulfur domain-containing protein
N-ethylmaleimide-sensitive fusion protein
putative DNA-directed RNA polymerase subunit I
lipoamide acyltransferase component of branched- chain alpha-keto acid dehydrogenase complex
putative phosphatidylethanolamine-binding protein
putative inner membrane complex protein 1a
putative inner membrane complex protein 1e
encoded by transcript variant 1; alternatively spliced
transcript variant 1; alternatively spliced
conserved Plasmodium membrane protein, unknown function
hypothetical protein; ortholog of PF3D7_0305500; may be nonfunctional due to frameshifts, or these may be assembler error
putative AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase)
putative ubiquitin-conjugating enzyme E2
putative P-loop containing nucleoside triphosphate hydrolase
putative FAD-dependent glycerol-3-phosphate dehydrogenase
similar to DNA sequence:PlasmoDB:PF3D7_0307000
ATP-dependent Clp protease proteolytic subunit
putative DNA polymerase epsilon subunit b
similar to DNA sequence:PlasmoDB:PF3D7_0308400
putative serine/threonine protein kinase
similar to DNA sequence:PlasmoDB:PF3D7_0309400
gap found within coding sequence; ortholog of PF3D7_0310100
part of same gene as PGSY75_0310100B; gap found within coding sequence
part of same gene as PGSY75_0310100A; gap found within coding sequence
parasite-infected erythrocyte surface protein
putative SAC3/GNAP family-related protein
encoded by transcript variant 2; alternatively spliced
transcript variant 2; alternatively spliced
putative trafficking protein particle complex subunit 4
putative phosphatidylinositol 3- and 4-kinase
gap found within coding sequence; ortholog of PF3D7_0311600
putative dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1
part of same gene as PGSY75_0311600B; gap found within coding sequence
part of same gene as PGSY75_0311600A; gap found within coding sequence
putative 26S proteasome regulatory subunit RPN12
similar to DNA sequence:PlasmoDB:PF3D7_0312600
similar to DNA sequence:PlasmoDB:PF3D7_0313000
apicoplast conserved ycf19 protein precursor, unknown function
conserved Plasmodium protein, unknown function; transcript variant 1; alternatively spliced
conserved Plasmodium protein, unknown function; transcript variant 2; alternatively spliced
putative serine/threonine protein phosphatase 6
circumsporozoite- and TRAP-related protein
putative mitochondrial ribosomal protein L29/L47 precursor
hypothetical protein; ortholog of PF3D7_0315600; likely nonfunctional due to stop codon and possible deletion
ortholog of PF3D7_0316100; Starts late compared with Pf3D7
putative mitochondrial ribosomal protein L27 precursor
similar to DNA sequence:PlasmoDB:PF3D7_0316300.2
similar to DNA sequence:PlasmoDB:PF3D7_0316300.1
putative proteasome subunit alpha type-3
putative CPSF (cleavage and polyadenylation specific factor), subunit A
putative DNA-directed RNA polymerase II subunit RPB1
putative cleavage and polyadenylation specificity factor
putative E3 ubiquitin-protein ligase RBX1
putative endonuclease/exonuclease/phosphatase family protein
putative T-complex protein 1 epsilon subunit
putative signal peptidase complex subunit 2
putative N-acetylglucosamine-1-phosphate transferase
gap found within coding sequence; ortholog of PF3D7_0321700
putative microtubule and actin binding protein
part of same gene as PGSY75_0321700A; gap found within coding sequence
part of same gene as PGSY75_0321700B; gap found within coding sequence
gap found within coding sequence; ortholog of PF3D7_0321900
part of same gene as PGSY75_0321900B; gap found within coding sequence
part of same gene as PGSY75_0321900A; gap found within coding sequence
putative translation machinery-associated protein 7
putative U4/U6.U5 tri-snRNP-associated protein 1