Methanothermococcus okinawensis IH1 plasmid pMETOK01, complete sequence.
Archaea; Euryarchaeota; Methanomada group; Methanococci; Methanococcales; Methanococcaceae; Methanothermococcus.
Complete sequence of plasmid of Methanothermococcus okinawensis IH1
Submitted (18-MAY-2011) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002793.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4086330\nSource DNA and organism available from William Whitman\n(whitman@uga.edu)\nContacts: William Whitman (whitman@uga.edu)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##MIGS-Data-START##\ninvestigation_type :: bacteria_archaea\nproject_name :: Methanothermococcus okinawensis IH1\ncollection_date :: Missing\nlat_lon :: Missing\ndepth :: Missing\nalt_elev :: Missing\ncountry :: Japan\nenvironment :: Hydrothermal vent, Deep sea, Fresh water\nnum_replicons :: 2\nref_biomaterial :: JCM 11175, DSM 14208\nbiotic_relationship :: Free living\ntrophic_level :: Autotroph, Lithotroph\nrel_to_oxygen :: Anaerobe\nisol_growth_condt :: Missing\nsequencing_meth :: WGS\nassembly :: Newbler v. 2.3\nfinishing_strategy :: Finished\nGOLD Stamp ID :: Gi02044\nType Strain :: Yes\nGreengenes ID :: 48249\nFunding Program :: DOE-CSP 2008\nGene Calling Method :: Prodigal 1.4, GenePRIMP\nIsolation Site :: Deep-sea hydrothermal vent chimney at the\n Iheya Ridge in the Okinawa Trough Japan\nCell Shape :: Coccus-shaped\nMotility :: Motile\nTemperature Range :: Thermophile\nTemperature Optimum :: 40 - 75C\npH :: 4.5 - 8.5\nGram Staining :: Gram-\nDiseases :: None\n##MIGS-Data-END##\n\n##Genome-Assembly-Data-START##\nFinishing Goal :: Finished\nCurrent Finishing Status :: Finished\nAssembly Method :: Newbler v. 2.3\nGenome Coverage :: 30x\nSequencing Technology :: 454/Illumina\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 00:59:23\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 1,701\nCDSs (total) :: 1,654\nGenes (coding) :: 1,625\nCDSs (with protein) :: 1,625\nGenes (RNA) :: 47\nrRNAs :: 3, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 3, 2, 2 (5S, 16S, 23S)\ntRNAs :: 38\nncRNAs :: 2\nPseudo Genes (total) :: 29\nCDSs (without protein) :: 29\nPseudo Genes (ambiguous residues) :: 0 of 29\nPseudo Genes (frameshifted) :: 23 of 29\nPseudo Genes (incomplete) :: 6 of 29\nPseudo Genes (internal stop) :: 1 of 29\nPseudo Genes (multiple problems) :: 1 of 29\nCRISPR Arrays :: 7\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
deep-sea hydrothermal vent chimney at the Iheya Ridge in the Okinawa Trough
type strain of Methanothermococcus okinawensis
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_018154715.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_018153571.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_011034466.1
COORDINATES: similar to AA sequence:RefSeq:WP_012939966.1
type II toxin-antitoxin system PemK/MazF family toxin