Lagopus muta isolate bLagMut1 chromosome W, bLagMut1 primary, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM041514.1.\nAssembly name: bLagMut1 primary\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/05/12. The original whole-genome shotgun project has the\naccession JAMCCT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 17-JUL-2021\nAssembly Method :: Minimap2 v. 0.15.1-r334; purge_dups v.\n 1.2.5; salsa v. 2.3\nAssembly Name :: bLagMut1 primary\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.75x\nSequencing Technology :: PacBio Sequel II HiFi; Dovetail genomics\n Hi-C; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: Lagopus muta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
heterogeneous nuclear ribonucleoprotein K; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein K, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
heterogeneous nuclear ribonucleoprotein K, transcript variant X3
heterogeneous nuclear ribonucleoprotein K, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoprotein K isoform X2
heterogeneous nuclear ribonucleoprotein K isoform X1
uncharacterized LOC125686428; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686428, transcript variant X1
uncharacterized LOC125686428, transcript variant X2
uncharacterized LOC125686424; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein C18orf25 homolog; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein C18orf25 homolog
uncharacterized LOC125686446; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686408; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein K02A2.6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
sia-alpha-2,3-Gal-beta-1,4-GlcNAc-R:alpha 2,8-sialyltransferase-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
uncharacterized LOC125686433; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686425; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
uncharacterized LOC125686417; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686417, transcript variant X4
uncharacterized protein LOC125686417 isoform X3
transitional endoplasmic reticulum ATPase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transitional endoplasmic reticulum ATPase-like, transcript variant X1
transitional endoplasmic reticulum ATPase-like, transcript variant X2
transitional endoplasmic reticulum ATPase-like isoform X1
transitional endoplasmic reticulum ATPase-like isoform X2
uncharacterized LOC125686417, transcript variant X2
uncharacterized LOC125686417, transcript variant X3
uncharacterized LOC125686417, transcript variant X1
uncharacterized protein LOC125686417 isoform X2
uncharacterized protein LOC125686417 isoform X1
uncharacterized LOC125686431; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger SWIM domain-containing protein 6-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger SWIM domain-containing protein 6-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
uncharacterized LOC125686416; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686416, transcript variant X3
uncharacterized LOC125686416, transcript variant X2
uncharacterized LOC125686416, transcript variant X1
uncharacterized protein LOC125686416 isoform X2
uncharacterized protein LOC125686416 isoform X1
uncharacterized protein LOC125686416 isoform X3
Golgi phosphoprotein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686427; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686452; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686452, transcript variant X2
uncharacterized LOC125686452, transcript variant X3
uncharacterized LOC125686452, transcript variant X1
uncharacterized LOC125686453; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ATP synthase subunit alpha, mitochondrial-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ATP synthase subunit alpha, mitochondrial-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
uncharacterized LOC125686403; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686403, transcript variant X2
uncharacterized LOC125686436; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger RNA-binding protein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger RNA-binding protein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
zinc finger RNA-binding protein-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
zinc finger RNA-binding protein-like isoform X2
zinc finger RNA-binding protein-like isoform X1
uncharacterized LOC125686403, transcript variant X1
uncharacterized LOC125686403, transcript variant X3
uncharacterized LOC125686439; Derived by automated computational analysis using gene prediction method: Gnomon.
activated RNA polymerase II transcriptional coactivator p15-like; Derived by automated computational analysis using gene prediction method: Gnomon.
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X2
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X5
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X3
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X4
activated RNA polymerase II transcriptional coactivator p15-like, transcript variant X1
activated RNA polymerase II transcriptional coactivator p15-like isoform X1
activated RNA polymerase II transcriptional coactivator p15-like isoform X2
chromodomain-helicase-DNA-binding protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain-helicase-DNA-binding protein 1-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 44 Proteins
chromodomain-helicase-DNA-binding protein 1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 48 Proteins
chromodomain-helicase-DNA-binding protein 1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 47 Proteins
chromodomain-helicase-DNA-binding protein 1-like, transcript variant X3
chromodomain-helicase-DNA-binding protein 1-like isoform X1
chromodomain-helicase-DNA-binding protein 1-like isoform X2
chromodomain-helicase-DNA-binding protein 1-like isoform X5
chromodomain-helicase-DNA-binding protein 1-like isoform X3
uncharacterized LOC125686441; Derived by automated computational analysis using gene prediction method: Gnomon.
chromodomain-helicase-DNA-binding protein 1-like, transcript variant X4
chromodomain-helicase-DNA-binding protein 1-like isoform X4
uncharacterized LOC125686405; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686405, transcript variant X2
uncharacterized LOC125686405, transcript variant X3
uncharacterized LOC125686405, transcript variant X1
nipped-B-like protein; Derived by automated computational analysis using gene prediction method: Gnomon.
nipped-B-like protein, transcript variant X2
nipped-B-like protein, transcript variant X1
nipped-B-like protein, transcript variant X4
nipped-B-like protein, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
nipped-B-like protein, transcript variant X6
nipped-B-like protein, transcript variant X3
uncharacterized protein LOC125686405 isoform X2
uncharacterized protein LOC125686405 isoform X1
endogenous retrovirus group K member 10 Gag polyprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
endogenous retrovirus group K member 10 Gag polyprotein-like
ubiquitin-associated protein 2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin-associated protein 2-like, transcript variant X2
ubiquitin-associated protein 2-like, transcript variant X1
ubiquitin-associated protein 2-like, transcript variant X5
ubiquitin-associated protein 2-like, transcript variant X6
ubiquitin-associated protein 2-like, transcript variant X4
ubiquitin-associated protein 2-like, transcript variant X3
uncharacterized LOC125686444; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686444, transcript variant X4
uncharacterized LOC125686402; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686402, transcript variant X1
uncharacterized LOC125686423; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686423, transcript variant X2
uncharacterized protein LOC125686423 isoform X2
ubiquitin-associated protein 2-like isoform X1
ubiquitin-associated protein 2-like isoform X2
ubiquitin-associated protein 2-like isoform X3
uncharacterized LOC125686423, transcript variant X1
uncharacterized protein LOC125686423 isoform X1
ubiquitin-associated protein 2-like, transcript variant X7
ubiquitin-associated protein 2-like isoform X4
small nucleolar RNA SNORD121A; Derived by automated computational analysis using gene prediction method: cmsearch.
COORDINATES: nucleotide motif:Rfam:14.6:RF01191
Derived by automated computational analysis using gene prediction method: cmsearch.
uncharacterized LOC125686402, transcript variant X2
uncharacterized LOC125686444, transcript variant X1
uncharacterized LOC125686444, transcript variant X2
uncharacterized LOC125686444, transcript variant X3
ubiquitin-conjugating enzyme E2 R2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin-conjugating enzyme E2 R2-like, transcript variant X2
ubiquitin-conjugating enzyme E2 R2-like, transcript variant X1
ubiquitin-conjugating enzyme E2 R2-like isoform X2
ubiquitin-conjugating enzyme E2 R2-like isoform X1
uncharacterized LOC125686442; Derived by automated computational analysis using gene prediction method: Gnomon.
ras GTPase-activating protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ras GTPase-activating protein 1-like, transcript variant X6
ras GTPase-activating protein 1-like, transcript variant X9
ras GTPase-activating protein 1-like, transcript variant X1
ras GTPase-activating protein 1-like, transcript variant X5
ras GTPase-activating protein 1-like, transcript variant X4
ras GTPase-activating protein 1-like, transcript variant X11
ras GTPase-activating protein 1-like, transcript variant X8
ras GTPase-activating protein 1-like, transcript variant X2
ras GTPase-activating protein 1-like, transcript variant X7
ras GTPase-activating protein 1-like, transcript variant X12
ras GTPase-activating protein 1-like, transcript variant X3
ras GTPase-activating protein 1-like, transcript variant X10
ras GTPase-activating protein 1-like, transcript variant X13
ras GTPase-activating protein 1-like isoform X5
ras GTPase-activating protein 1-like isoform X1
ras GTPase-activating protein 1-like isoform X4
ras GTPase-activating protein 1-like isoform X3
ras GTPase-activating protein 1-like isoform X7
ras GTPase-activating protein 1-like isoform X2
ras GTPase-activating protein 1-like isoform X6
ras GTPase-activating protein 1-like isoform X8
uncharacterized LOC125686414; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686414, transcript variant X1
uncharacterized protein LOC125686414 isoform X1
uncharacterized LOC125686414, transcript variant X2
uncharacterized protein LOC125686414 isoform X2
mothers against decapentaplegic homolog 7-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mothers against decapentaplegic homolog 7-like, transcript variant X3
mothers against decapentaplegic homolog 7-like, transcript variant X2
mothers against decapentaplegic homolog 7-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
mothers against decapentaplegic homolog 7-like isoform X3
mothers against decapentaplegic homolog 7-like isoform X2
mothers against decapentaplegic homolog 7-like isoform X1
uncharacterized LOC125686434; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686432; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686432, transcript variant X3
uncharacterized LOC125686432, transcript variant X2
uncharacterized LOC125686432, transcript variant X1
uncharacterized LOC125686459; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686447; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686407; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin-like protein KIF18A; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686457; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686455; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686455, transcript variant X1
uncharacterized LOC125686455, transcript variant X2
kinesin-like protein KIF18A, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
kinesin-like protein KIF18A, transcript variant X1
ras GTPase-activating-like protein IQGAP1; Derived by automated computational analysis using gene prediction method: Gnomon.
kinesin-like protein KIF18A, transcript variant X4
kinesin-like protein KIF18A, transcript variant X3
uncharacterized LOC125686456; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686443; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686420; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: uncharacterized protein LOC125686420
uncharacterized LOC125686458; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686454; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686454, transcript variant X2
uncharacterized LOC125686454, transcript variant X4
uncharacterized LOC125686454, transcript variant X1
uncharacterized LOC125686454, transcript variant X3
kinesin-like protein KIF18A, transcript variant X6
kinesin-like protein KIF18A, transcript variant X7
kinesin-like protein KIF18A, transcript variant X5
uncharacterized LOC125686419; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686435; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686462; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686462, transcript variant X2
rho GTPase-activating protein 32-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: rho GTPase-activating protein 32-like
uncharacterized LOC125686462, transcript variant X1
mesoderm induction early response protein 3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
mesoderm induction early response protein 3-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
mesoderm induction early response protein 3-like, transcript variant X3
mesoderm induction early response protein 3-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 9 Proteins
mesoderm induction early response protein 3-like, transcript variant X6
mesoderm induction early response protein 3-like, transcript variant X4
mesoderm induction early response protein 3-like, transcript variant X1
mesoderm induction early response protein 3-like isoform X2
mesoderm induction early response protein 3-like isoform X1
mesoderm induction early response protein 3-like isoform X3
uncharacterized LOC125686464; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686464, transcript variant X2
uncharacterized LOC125686464, transcript variant X1
uncharacterized LOC125686467; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686465; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686465, transcript variant X2
uncharacterized LOC125686465, transcript variant X1
uncharacterized LOC125686463; Derived by automated computational analysis using gene prediction method: Gnomon.