Lagopus muta isolate bLagMut1 chromosome 38, bLagMut1 primary, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM041513.1.\nAssembly name: bLagMut1 primary\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/05/12. The original whole-genome shotgun project has the\naccession JAMCCT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 17-JUL-2021\nAssembly Method :: Minimap2 v. 0.15.1-r334; purge_dups v.\n 1.2.5; salsa v. 2.3\nAssembly Name :: bLagMut1 primary\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.75x\nSequencing Technology :: PacBio Sequel II HiFi; Dovetail genomics\n Hi-C; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: Lagopus muta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
zinc finger protein ubi-d4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein ubi-d4-like
shematrin-like protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
shematrin-like protein 2, transcript variant X1
COORDINATES: polyA evidence [ECO:0006239]
shematrin-like protein 2, transcript variant X4
shematrin-like protein 2, transcript variant X6
shematrin-like protein 2, transcript variant X5
shematrin-like protein 2, transcript variant X3
shematrin-like protein 2, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized protein LOC125686386 isoform X1
uncharacterized protein LOC125686386 isoform X6
uncharacterized protein LOC125686386 isoform X5
uncharacterized protein LOC125686386 isoform X3
uncharacterized protein LOC125686386 isoform X2
testis-expressed protein 13D-like; Derived by automated computational analysis using gene prediction method: Gnomon.
testis-expressed protein 13D-like, transcript variant X6
testis-expressed protein 13D-like, transcript variant X5
testis-expressed protein 13D-like, transcript variant X1
testis-expressed protein 13D-like, transcript variant X3
testis-expressed protein 13D-like, transcript variant X2
testis-expressed protein 13D-like, transcript variant X8
testis-expressed protein 13D-like, transcript variant X4
testis-expressed protein 13D-like, transcript variant X7
muscle M-line assembly protein unc-89-like isoform X6
testis-expressed protein 13D-like isoform X5
uncharacterized protein LOC125686385 isoform X1
uncharacterized protein LOC125686385 isoform X3
uncharacterized protein LOC125686385 isoform X2
muscle M-line assembly protein unc-89-like isoform X8
muscle M-line assembly protein unc-89-like isoform X7
uncharacterized LOC125686388; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686388, transcript variant X2
uncharacterized LOC125686388, transcript variant X1