Lagopus muta isolate bLagMut1 chromosome 35, bLagMut1 primary, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM041510.1.\nAssembly name: bLagMut1 primary\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/05/12. The original whole-genome shotgun project has the\naccession JAMCCT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 17-JUL-2021\nAssembly Method :: Minimap2 v. 0.15.1-r334; purge_dups v.\n 1.2.5; salsa v. 2.3\nAssembly Name :: bLagMut1 primary\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.75x\nSequencing Technology :: PacBio Sequel II HiFi; Dovetail genomics\n Hi-C; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: Lagopus muta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
tetratricopeptide repeat protein 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: tetratricopeptide repeat protein 5-like
heterogeneous nuclear ribonucleoproteins C1/C2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
heterogeneous nuclear ribonucleoproteins C1/C2-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686343; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686343, transcript variant X6
uncharacterized LOC125686343, transcript variant X4
uncharacterized LOC125686343, transcript variant X3
uncharacterized LOC125686343, transcript variant X2
uncharacterized LOC125686343, transcript variant X1
uncharacterized LOC125686343, transcript variant X5
uncharacterized protein LOC125686343 isoform X1
uncharacterized protein LOC125686343 isoform X3
uncharacterized protein LOC125686343 isoform X2
uncharacterized protein LOC125686343 isoform X4
SPT16 homolog, facilitates chromatin remodeling subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
SPT16 homolog, facilitates chromatin remodeling subunit
COORDINATES: polyA evidence [ECO:0006239]
uncharacterized LOC125686351; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686350; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686350, transcript variant X2
uncharacterized LOC125686350, transcript variant X1
uncharacterized LOC125686348; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686349; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686349, transcript variant X2
uncharacterized LOC125686349, transcript variant X1
uncharacterized LOC125686349, transcript variant X3
uncharacterized LOC125686347; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686347, transcript variant X1
uncharacterized LOC125686347, transcript variant X2
uncharacterized LOC125686347, transcript variant X3
FACT complex subunit SPT16-like; Derived by automated computational analysis using gene prediction method: Gnomon.