Lagopus muta isolate bLagMut1 chromosome 35, bLagMut1 primary, whole genome shotgun sequence.
type: Entry
definition: Lagopus muta isolate bLagMut1 chromosome 35, bLagMut1 primary, whole genome shotgun sequence.
sequence version: NC_064467.1
sequence date: 2022-07-07
sequence: sequence
division: CON
label: NC_064467.1
type: RefSeq
SIO_000068: refseq
dblink: PRJNA853367
dblink: SAMN25144835
keyword: WGS
keyword: RefSeq
source: Lagopus muta (rock ptarmigan)
organism: Lagopus muta
taxonomy: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus.
comment: REFSEQ INFORMATION: The reference sequence is identical to\nCM041510.1.\nAssembly name: bLagMut1 primary\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/05/12. The original whole-genome shotgun project has the\naccession JAMCCT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 17-JUL-2021\nAssembly Method :: Minimap2 v. 0.15.1-r334; purge_dups v.\n 1.2.5; salsa v. 2.3\nAssembly Name :: bLagMut1 primary\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.75x\nSequencing Technology :: PacBio Sequel II HiFi; Dovetail genomics\n Hi-C; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: Lagopus muta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##

sequence
subclass of: SO_0000340
sequence length: 196355
topology: linear
so has quality: SO_0000987
location: 1..196355
location: region:1-196355:1
RO_0002162: 64668

NC_064467
type: RefSeq
SIO_000068: refseq

PRJNA853367
type: BioProject
SIO_000068: bioproject

SAMN25144835
type: BioSample
SIO_000068: biosample

position:1:1
position: 1
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:196355:1
position: 196355
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

feature:1-196355:1:source
so part of: sequence
organism: Lagopus muta
mol type: genomic DNA
isolate: bLagMut1
chromosome: 35
sex: female
tissue type: blood
dev stage: adult
country: Iceland: Husavik, NE
lat lon: 66.088900 N 17.264700 W
collected by: Kristinn P. Magnusson

64668
type: Taxonomy
SIO_000068: taxonomy

LOC125686345
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686345
note: tetratricopeptide repeat protein 5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: 4107..28437
location: region:4107-28437:1
so has part: feature:4107-28437:1:exon
subclass of: SO_0000010

125686345
type: Gene
SIO_000068: ncbigene

position:4107:1
position: 4107
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28437:1
position: 28437
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4107-28437:1:exon

LOC125686345
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: LOC125686345
product: tetratricopeptide repeat protein 5-like
exception: unclassified transcription discrepancy
note: The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
transcript id: XM_048930240.1
SIO_010081: LOC125686345
subclass of: SO_0000673
so part of: LOC125686345
location: join(4107..4220,5174..5348,5445..5576,5754..5819,5886..6104,9829..10040,12494..12626,16302..16393,19240..19296,19523..19669,21816..21979,23992..24133,28287..28437)
location: region:4107-28437:1
so has part: feature:4107-4220:1:exon
so has part: feature:5174-5348:1:exon
so has part: feature:5445-5576:1:exon
so has part: feature:5754-5819:1:exon
so has part: feature:5886-6104:1:exon
so has part: feature:9829-10040:1:exon
so has part: feature:12494-12626:1:exon
so has part: feature:16302-16393:1:exon
so has part: feature:19240-19296:1:exon
so has part: feature:19523-19669:1:exon
so has part: feature:21816-21979:1:exon
so has part: feature:23992-24133:1:exon
so has part: feature:28287-28437:1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:4107-4220:1:exon

position:4220:1
position: 4220
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:5174-5348:1:exon

position:5174:1
position: 5174
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5348:1
position: 5348
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:5445-5576:1:exon

position:5445:1
position: 5445
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5576:1
position: 5576
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:5754-5819:1:exon

position:5754:1
position: 5754
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:5819:1
position: 5819
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:5886-6104:1:exon

position:5886:1
position: 5886
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:6104:1
position: 6104
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:9829-10040:1:exon

position:9829:1
position: 9829
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:10040:1
position: 10040
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:12494-12626:1:exon

position:12494:1
position: 12494
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:12626:1
position: 12626
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:16302-16393:1:exon

position:16302:1
position: 16302
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:16393:1
position: 16393
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:19240-19296:1:exon

position:19240:1
position: 19240
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19296:1
position: 19296
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:19523-19669:1:exon

position:19523:1
position: 19523
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:19669:1
position: 19669
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:21816-21979:1:exon

position:21816:1
position: 21816
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:21979:1
position: 21979
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:23992-24133:1:exon

position:23992:1
position: 23992
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:24133:1
position: 24133
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:28287-28437:1:exon

position:28287:1
position: 28287
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

LOC125686345
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: LOC125686345
exception: unclassified translation discrepancy
note: The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: LOW QUALITY PROTEIN: tetratricopeptide repeat protein 5-like
translation: MAAVEEEEESGEAAADGEGDGEALRAMEEMVAELYRFRDTVLHGNGGGHDGRGGGHDGGHDGGGGYDRGGHDGGGGHDRGGHDGGGGGHDGGGGGHDGGGSHDRSSHDRSGHDGGGSHDRSGHDGGSHDRSGHDGGGSHDRSGHDRSGHDGGGSHDRSGHDRSSHDGGSHDRSGHDRSGHDGGGGHDGGHDDDDGGEVKGGDGTKTMAALEEEMERVVQRMESMRVSPQAVPRALYLRGRALLAAPLGSVRAEALLGRALKLEPGLSAAWTLLGETLWGRGDLDGARACFRGALQHGEDAEARRLLSMALRQSDGAAALRESLRHAEAAVRCQPCDGRNWYVLGNAYVSLFFAGGQRPEVARRALGAYGQAEKVDPTAASNPDLHLNRATLLQFEENYGAALDGYARAAALAPDWPEPRMRRARLLDYLGRICAALGAAGKARGRRRRALSPSLLGSLGEAVTPMAALGDGDNVGRALLGRVLGCVLPDERVPIAVGLSDGTGSVVLSVYNAAPGWGLAVGDAVAVGQPHVRRHHIQHQGKTFSFVGVRIPSPLALMVNGRRPPPAPQSPPPRLSCSCAPDSPSLER
SIO_010081: LOC125686345
subclass of: SO_0000673
so part of: LOC125686345
location: join(4137..4220,5174..5348,5445..5576,5754..5819,5886..6104,9829..10040,12494..12626,16302..16393,19240..19296,19523..19669,21816..21979,23992..24133,28287..28428)
location: region:4137-28428:1
so has part: feature:4137-4220:1:exon
so has part: feature:5174-5348:1:exon
so has part: feature:5445-5576:1:exon
so has part: feature:5754-5819:1:exon
so has part: feature:5886-6104:1:exon
so has part: feature:9829-10040:1:exon
so has part: feature:12494-12626:1:exon
so has part: feature:16302-16393:1:exon
so has part: feature:19240-19296:1:exon
so has part: feature:19523-19669:1:exon
so has part: feature:21816-21979:1:exon
so has part: feature:23992-24133:1:exon
so has part: feature:28287-28428:1:exon

XP_048786197.1
type: Protein
SIO_000068: ncbiprotein

position:4137:1
position: 4137
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

position:28428:1
position: 28428
reference: sequence
type: ForwardStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:4137-4220:1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:5174-5348:1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:5445-5576:1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:5754-5819:1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:5886-6104:1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:9829-10040:1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:12494-12626:1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:16302-16393:1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:19240-19296:1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:19523-19669:1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:21816-21979:1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:23992-24133:1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:28287-28428:1:exon

LOC125686344
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686344
note: heterogeneous nuclear ribonucleoproteins C1/C2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(32335..42790)
location: region:32335-42790:-1
so has part: feature:32335-42790:-1:exon
subclass of: SO_0000010

125686344
type: Gene
SIO_000068: ncbigene

position:32335:-1
position: 32335
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42790:-1
position: 42790
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:32335-42790:-1:exon

LOC125686344
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: LOC125686344
product: heterogeneous nuclear ribonucleoproteins C1/C2-like
note: Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
transcript id: XM_048930239.1
SIO_010081: LOC125686344
subclass of: SO_0000673
so part of: LOC125686344
location: complement(join(32335..32476,36159..36311,36425..36526,42546..42790))
location: region:32335-42790:-1
so has part: feature:42546-42790:-1:exon
so has part: feature:36425-36526:-1:exon
so has part: feature:36159-36311:-1:exon
so has part: feature:32335-32476:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:42546-42790:-1:exon

position:42546:-1
position: 42546
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36425-36526:-1:exon

position:36425:-1
position: 36425
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36526:-1
position: 36526
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:36159-36311:-1:exon

position:36159:-1
position: 36159
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:36311:-1
position: 36311
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:32335-32476:-1:exon

position:32476:-1
position: 32476
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686344
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: LOC125686344
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: heterogeneous nuclear ribonucleoproteins C1/C2-like
translation: MGFGIWDFWGHLGAFWGRRMYSYPARVPPPPPIARAVVPSKRQRVSGNTSRRGKSGFNSKSGQRGSSSKSGKLKGDDLQTIKKELSQIKQKVDSLLESLEKIEKEQKQKSDKTEEEQGGASSKKEESGPKTEAGGEDSAEEGDLLDDEDAEERGGRSAGIHQGR
SIO_010081: LOC125686344
subclass of: SO_0000673
so part of: LOC125686344
location: complement(join(32454..32476,36159..36311,36425..36526,42546..42762))
location: region:32454-42762:-1
so has part: feature:42546-42762:-1:exon
so has part: feature:36425-36526:-1:exon
so has part: feature:36159-36311:-1:exon
so has part: feature:32454-32476:-1:exon

XP_048786196.1
type: Protein
SIO_000068: ncbiprotein

position:32454:-1
position: 32454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:42762:-1
position: 42762
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:42546-42762:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:36425-36526:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:36159-36311:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:32454-32476:-1:exon

LOC125686343
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686343
note: uncharacterized LOC125686343; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(36623..39393)
location: region:36623-39393:-1
so has part: feature:36623-39393:-1:exon
subclass of: SO_0000010

125686343
type: Gene
SIO_000068: ncbigene

position:36623:-1
position: 36623
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:39393:-1
position: 39393
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:36623-39393:-1:exon

LOC125686343
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 64668
gene: LOC125686343
product: uncharacterized LOC125686343, transcript variant X6
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373772.1
SIO_010081: LOC125686343
so part of: LOC125686343
location: complement(join(36623..37724,39341..39393))
location: region:36623-39393:-1
so has part: feature:39341-39393:-1:exon
so has part: feature:36623-37724:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:39341-39393:-1:exon

position:39341:-1
position: 39341
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36623-37724:-1:exon

position:37724:-1
position: 37724
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686343
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: LOC125686343
product: uncharacterized LOC125686343, transcript variant X4
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_048930238.1
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(36623..37558,37683..37724,38554..39093))
location: region:36623-39093:-1
so has part: feature:38554-39093:-1:exon
so has part: feature:37683-37724:-1:exon
so has part: feature:36623-37558:-1:exon

position:39093:-1
position: 39093
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38554-39093:-1:exon

position:38554:-1
position: 38554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37683-37724:-1:exon

position:37683:-1
position: 37683
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:36623-37558:-1:exon

position:37558:-1
position: 37558
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686343
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: LOC125686343
product: uncharacterized LOC125686343, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_048930237.1
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(36623..37204,38429..39093))
location: region:36623-39093:-1
so has part: feature:38429-39093:-1:exon
so has part: feature:36623-37204:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38429-39093:-1:exon

position:38429:-1
position: 38429
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36623-37204:-1:exon

position:37204:-1
position: 37204
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686343
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: LOC125686343
product: uncharacterized LOC125686343, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_048930236.1
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(36623..37204,37329..37349,38243..39093))
location: region:36623-39093:-1
so has part: feature:38243-39093:-1:exon
so has part: feature:37329-37349:-1:exon
so has part: feature:36623-37204:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38243-39093:-1:exon

position:38243:-1
position: 38243
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:37329-37349:-1:exon

position:37329:-1
position: 37329
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:37349:-1
position: 37349
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:36623-37204:-1:exon

LOC125686343
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: LOC125686343
product: uncharacterized LOC125686343, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_048930234.1
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(36623..37204,38139..39093))
location: region:36623-39093:-1
so has part: feature:38139-39093:-1:exon
so has part: feature:36623-37204:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:38139-39093:-1:exon

position:38139:-1
position: 38139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36623-37204:-1:exon

LOC125686343
type: Miscellaneous RNA
subclass of: SO_0000673
RO_0002162: 64668
gene: LOC125686343
product: uncharacterized LOC125686343, transcript variant X5
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373771.1
SIO_010081: LOC125686343
so part of: LOC125686343
location: complement(join(36623..37766,38491..38562))
location: region:36623-38562:-1
so has part: feature:38491-38562:-1:exon
so has part: feature:36623-37766:-1:exon

position:38562:-1
position: 38562
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38491-38562:-1:exon

position:38491:-1
position: 38491
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:36623-37766:-1:exon

position:37766:-1
position: 37766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686343
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: LOC125686343
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125686343 isoform X1
translation: MPNFPIFGSNLPHFRPNSPFSAPIPPFPLLSPFLHLLSHFHPISFPPSFPPYNFRIPFSPIQPQIPPHFCFQTPKFPLIFGPTPQIPPHFASKPPNFPSFCLQPPKFPLIFAPTPQISPHFCSNPPNFPSFWVFIEFQLGFIGFHWDFWGFLFMLDSFSSLGFFLFGVIYGVFSLFSLFRVKFPLFRVKFPLFWVKFPLFWVRFLLFWVKFLLFGSNFPFFMSHFPHFRSNSSFLGHISPFLGQISPFLGQISHFWVKSPLFQVKFLLFLVKFLFFWVKFLLFGSDFPIFMPNFPFFMSDFPSFRSVFSLLGQIPPFSCQISPFSGQISPFSGQISSFLGQISPFWVKFPLFGSNFPYFWSDFPILGSNLLFFRSNFPFFMSDFPYFWSNFPFFGSNFSFLGQIPPFLGQISPFWVKFLLFQVKFPLFGSNFPFFGSDASFLVEISPFFWSNFSFLGQISPIFMPNFPFFMSN
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(36738..37204,38139..39093))
location: region:36738-39093:-1
so has part: feature:38139-39093:-1:exon
so has part: feature:36738-37204:-1:exon

XP_048786191.1
type: Protein
SIO_000068: ncbiprotein

position:36738:-1
position: 36738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38139-39093:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:36738-37204:-1:exon

LOC125686343
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: LOC125686343
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125686343 isoform X3
translation: MPNFPIFGSNLPHFRPNSPFSAPIPPFPLLSPFLHLLSHFHPISFPPSFPPYNFRIPFSPIQPQIPPHFCFQTPKFPLIFGPTPQIPPHFASKPPNFPSFCLQPPKFPLIFAPTPQISPHFCSNPPNFPSFWVFIEFQLGFIGFHWDFWGFLFMLDSFSSLGFFLFGVIYGVFSLFSLFRVKFPLFRVKFPLFWVKFPLFWVRFLLFWVKFLLFGSNFPFFMSNFPIFWSDFSIFRSNFLFFGSNFPFLGEISPFWVKFPLFLVRFPHFGVKSPLFQVKFPLFHVRFPLFLVKFPLFWVKFLLFGSNSSFFGSNFPFLGQIPPFSGQISPFWVKFPLFWIRCLIFG
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(36829..37204,38429..39093))
location: region:36829-39093:-1
so has part: feature:38429-39093:-1:exon
so has part: feature:36829-37204:-1:exon

XP_048786194.1
type: Protein
SIO_000068: ncbiprotein

position:36829:-1
position: 36829
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38429-39093:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:36829-37204:-1:exon

LOC125686343
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: LOC125686343
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125686343 isoform X2
translation: MPNFPIFGSNLPHFRPNSPFSAPIPPFPLLSPFLHLLSHFHPISFPPSFPPYNFRIPFSPIQPQIPPHFCFQTPKFPLIFGPTPQIPPHFASKPPNFPSFCLQPPKFPLIFAPTPQISPHFCSNPPNFPSFWVFIEFQLGFIGFHWDFWGFLFMLDSFSSLGFFLFGVIYGVFSLFSLFRVKFPLFRVKFPLFWVKFPLFWVRFLLFWVKFLLFGSNFPFFMSHFPHFRSNSSFLGHISPFLGQISPFLGQISHFWVKSPLFQVKFLLFLVKFLFFWVKFLLFGSNFPFFMSNFPIFWSDFSIFRSNFLFFGSNFPFLGEISPFWVKFPLFLVRFPHFGVKSPLFQVKFPLFHVRFPLFLVKFPLFWVKFLLFGSNSSFFGSNFPFLGQIPPFSGQISPFWVKFPLFWIRCLIFG
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(36829..37204,37329..37349,38243..39093))
location: region:36829-39093:-1
so has part: feature:38243-39093:-1:exon
so has part: feature:37329-37349:-1:exon
so has part: feature:36829-37204:-1:exon

XP_048786193.1
type: Protein
SIO_000068: ncbiprotein

urn:…
SIO_000300: 1
SIO_000628: feature:38243-39093:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37329-37349:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:36829-37204:-1:exon

LOC125686343
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: LOC125686343
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: uncharacterized protein LOC125686343 isoform X4
translation: MPNFPIFGSNLPHFRPNSPFSAPIPPFPLLSPFLHLLSHFHPISFPPSFPPYNFRIPFSPIQPQIPPHFCFQTPKFPLIFGPTPQIPPHFASKPPNFPSFCLQPPKFPLIFAPTPQISPHFCSNPPNFPSFWVFIEFQLGFIGFHWDFWGFLFMLDSFSSLGFFLFGVIYGVFSLFSLFRVKFPLFWVKFPLFQVKFLLFESDFPIFMPNFPYFWSNFPYFKSYFPFLGQISPFSCQISLFSGQISPFSCQICPFFGSNFPFFRSNFPFFMSNFPFFGSNFPFFGSNSSFSGQLSPFSCMIFPFWVRFPRFQVKFPHFLVRFLHFQVKFPLFWVKFPLFG
SIO_010081: LOC125686343
subclass of: SO_0000673
so part of: LOC125686343
location: complement(join(37118..37558,37683..37724,38554..39093))
location: region:37118-39093:-1
so has part: feature:38554-39093:-1:exon
so has part: feature:37683-37724:-1:exon
so has part: feature:37118-37558:-1:exon

XP_048786195.1
type: Protein
SIO_000068: ncbiprotein

position:37118:-1
position: 37118
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:38554-39093:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:37683-37724:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:37118-37558:-1:exon

SUPT16H
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: SUPT16H
note: SPT16 homolog, facilitates chromatin remodeling subunit; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(53633..111454)
location: region:53633-111454:-1
so has part: feature:53633-111454:-1:exon
subclass of: SO_0000010

125686346
type: Gene
SIO_000068: ncbigene

position:53633:-1
position: 53633
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:111454:-1
position: 111454
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:53633-111454:-1:exon

SUPT16H
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: SUPT16H
product: SPT16 homolog, facilitates chromatin remodeling subunit
experiment: COORDINATES: polyA evidence [ECO:0006239]
transcript id: XM_048930241.1
SIO_010081: SUPT16H
subclass of: SO_0000673
so part of: SUPT16H
location: complement(join(53633..53770,61442..61519,63988..64117,68139..68268,70240..70409,73738..73813,77674..77786,80497..80622,84663..84781,94090..94216,100475..100610,106343..106470,109588..109741,110651..110766,111436..111454))
location: region:53633-111454:-1
so has part: feature:111436-111454:-1:exon
so has part: feature:110651-110766:-1:exon
so has part: feature:109588-109741:-1:exon
so has part: feature:106343-106470:-1:exon
so has part: feature:100475-100610:-1:exon
so has part: feature:94090-94216:-1:exon
so has part: feature:84663-84781:-1:exon
so has part: feature:80497-80622:-1:exon
so has part: feature:77674-77786:-1:exon
so has part: feature:73738-73813:-1:exon
so has part: feature:70240-70409:-1:exon
so has part: feature:68139-68268:-1:exon
so has part: feature:63988-64117:-1:exon
so has part: feature:61442-61519:-1:exon
so has part: feature:53633-53770:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:111436-111454:-1:exon

position:111436:-1
position: 111436
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:110651-110766:-1:exon

position:110651:-1
position: 110651
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:110766:-1
position: 110766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:109588-109741:-1:exon

position:109588:-1
position: 109588
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109741:-1
position: 109741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:106343-106470:-1:exon

position:106343:-1
position: 106343
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:106470:-1
position: 106470
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:100475-100610:-1:exon

position:100475:-1
position: 100475
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:100610:-1
position: 100610
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:94090-94216:-1:exon

position:94090:-1
position: 94090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:94216:-1
position: 94216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:84663-84781:-1:exon

position:84663:-1
position: 84663
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:84781:-1
position: 84781
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 8
SIO_000628: feature:80497-80622:-1:exon

position:80497:-1
position: 80497
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:80622:-1
position: 80622
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 9
SIO_000628: feature:77674-77786:-1:exon

position:77674:-1
position: 77674
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:77786:-1
position: 77786
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 10
SIO_000628: feature:73738-73813:-1:exon

position:73738:-1
position: 73738
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:73813:-1
position: 73813
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 11
SIO_000628: feature:70240-70409:-1:exon

position:70240:-1
position: 70240
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:70409:-1
position: 70409
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 12
SIO_000628: feature:68139-68268:-1:exon

position:68139:-1
position: 68139
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:68268:-1
position: 68268
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 13
SIO_000628: feature:63988-64117:-1:exon

position:63988:-1
position: 63988
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:64117:-1
position: 64117
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 14
SIO_000628: feature:61442-61519:-1:exon

position:61442:-1
position: 61442
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:61519:-1
position: 61519
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 15
SIO_000628: feature:53633-53770:-1:exon

position:53770:-1
position: 53770
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

SUPT16H
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: SUPT16H
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: FACT complex subunit SPT16
translation: MPKEPHIREMKIYIDKKYETVIMPVFGIATPFHIATIKNISMSVEGDYTYLRINFYCPGSALGRNEGNIFPNPEATFVKEITYRASNMKTPGEQSVPALNLQNAFRIIKEVQKRYKTREAEEKEKEGIVKQDSLVINLNRSNPKLKDLYIRPNIAQKRMQGSLEAHVNGFRFTSVRGDKVDILYNNIKHAVFQPCDGEMIIVLHFHLKNAIMFGKKRHTDVQFYTEVGEITTDLGKHQHMHDRDDLYAEQMEREMRHKLKTAFKNFIEKVEALTKEELEFEVPFRELGFNGAPYRSTCLLQPTSSALVNCTEWPPFVVTLDEVELIHFERVQFHLKNFDMVIVYKDYSRKVTMINAIPVASLDPIKEWLNSCDLKYTEGVQSLNWTKIMKTIVDDPEGFFEQGGWSFLEPEGEGSEAEVGESESEMEDETFNPSEEDYEEEEEDSDEDYSSEAEESEYSKESLGSEEESGKDWDELEEEARKADRESQYEEEEERGRGRKRKAATHSLRGATPKKKRK
SIO_010081: SUPT16H
subclass of: SO_0000673
so part of: SUPT16H
location: complement(join(53661..53770,61442..61519,63988..64117,68139..68268,70240..70409,73738..73813,77674..77786,80497..80622,84663..84781,94090..94216,100475..100610,106343..106470,109588..109701))
location: region:53661-109701:-1
so has part: feature:109588-109701:-1:exon
so has part: feature:106343-106470:-1:exon
so has part: feature:100475-100610:-1:exon
so has part: feature:94090-94216:-1:exon
so has part: feature:84663-84781:-1:exon
so has part: feature:80497-80622:-1:exon
so has part: feature:77674-77786:-1:exon
so has part: feature:73738-73813:-1:exon
so has part: feature:70240-70409:-1:exon
so has part: feature:68139-68268:-1:exon
so has part: feature:63988-64117:-1:exon
so has part: feature:61442-61519:-1:exon
so has part: feature:53661-53770:-1:exon

XP_048786198.1
type: Protein
SIO_000068: ncbiprotein

position:53661:-1
position: 53661
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:109701:-1
position: 109701
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:109588-109701:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:106343-106470:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:100475-100610:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:94090-94216:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:84663-84781:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:80497-80622:-1:exon

urn:…
SIO_000300: 7
SIO_000628: feature:77674-77786:-1:exon

urn:…
SIO_000300: 8
SIO_000628: feature:73738-73813:-1:exon

urn:…
SIO_000300: 9
SIO_000628: feature:70240-70409:-1:exon

urn:…
SIO_000300: 10
SIO_000628: feature:68139-68268:-1:exon

urn:…
SIO_000300: 11
SIO_000628: feature:63988-64117:-1:exon

urn:…
SIO_000300: 12
SIO_000628: feature:61442-61519:-1:exon

urn:…
SIO_000300: 13
SIO_000628: feature:53661-53770:-1:exon

LOC125686351
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686351
note: uncharacterized LOC125686351; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(62634..63261)
location: region:62634-63261:-1
so has part: feature:62634-63261:-1:exon
subclass of: SO_0000011

125686351
type: Gene
SIO_000068: ncbigene

position:62634:-1
position: 62634
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:63261:-1
position: 63261
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:62634-63261:-1:exon

LOC125686351
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686351
product: uncharacterized LOC125686351
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373782.1
SIO_010081: LOC125686351
subclass of: SO_0000673
so part of: LOC125686351
location: complement(join(62634..62750,62888..62933,63070..63261))
location: region:62634-63261:-1
so has part: feature:63070-63261:-1:exon
so has part: feature:62888-62933:-1:exon
so has part: feature:62634-62750:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:63070-63261:-1:exon

position:63070:-1
position: 63070
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:62888-62933:-1:exon

position:62888:-1
position: 62888
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:62933:-1
position: 62933
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:62634-62750:-1:exon

position:62750:-1
position: 62750
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686350
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686350
note: uncharacterized LOC125686350; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(111516..116346)
location: region:111516-116346:-1
so has part: feature:111516-116346:-1:exon
subclass of: SO_0000011

125686350
type: Gene
SIO_000068: ncbigene

position:111516:-1
position: 111516
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:116346:-1
position: 116346
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:111516-116346:-1:exon

LOC125686350
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686350
product: uncharacterized LOC125686350, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373781.1
SIO_010081: LOC125686350
subclass of: SO_0000673
so part of: LOC125686350
location: complement(join(111516..111614,111907..112200,112808..113727,116019..116346))
location: region:111516-116346:-1
so has part: feature:116019-116346:-1:exon
so has part: feature:112808-113727:-1:exon
so has part: feature:111907-112200:-1:exon
so has part: feature:111516-111614:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:116019-116346:-1:exon

position:116019:-1
position: 116019
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:112808-113727:-1:exon

position:112808:-1
position: 112808
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:113727:-1
position: 113727
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:111907-112200:-1:exon

position:111907:-1
position: 111907
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:112200:-1
position: 112200
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:111516-111614:-1:exon

position:111614:-1
position: 111614
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686350
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686350
product: uncharacterized LOC125686350, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373780.1
SIO_010081: LOC125686350
subclass of: SO_0000673
so part of: LOC125686350
location: complement(join(111516..111614,111907..112200,112808..114568))
location: region:111516-114568:-1
so has part: feature:112808-114568:-1:exon
so has part: feature:111907-112200:-1:exon
so has part: feature:111516-111614:-1:exon

position:114568:-1
position: 114568
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:112808-114568:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:111907-112200:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:111516-111614:-1:exon

LOC125686348
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686348
note: uncharacterized LOC125686348; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(121740..138960)
location: region:121740-138960:-1
so has part: feature:121740-138960:-1:exon
subclass of: SO_0000011

125686348
type: Gene
SIO_000068: ncbigene

position:121740:-1
position: 121740
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:138960:-1
position: 138960
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:121740-138960:-1:exon

LOC125686348
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686348
product: uncharacterized LOC125686348
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373776.1
SIO_010081: LOC125686348
subclass of: SO_0000673
so part of: LOC125686348
location: complement(join(121740..122061,124317..124766,125423..125914,128336..128540,128746..129360,130058..130262,136748..138960))
location: region:121740-138960:-1
so has part: feature:136748-138960:-1:exon
so has part: feature:130058-130262:-1:exon
so has part: feature:128746-129360:-1:exon
so has part: feature:128336-128540:-1:exon
so has part: feature:125423-125914:-1:exon
so has part: feature:124317-124766:-1:exon
so has part: feature:121740-122061:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:136748-138960:-1:exon

position:136748:-1
position: 136748
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:130058-130262:-1:exon

position:130058:-1
position: 130058
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:130262:-1
position: 130262
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:128746-129360:-1:exon

position:128746:-1
position: 128746
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:129360:-1
position: 129360
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:128336-128540:-1:exon

position:128336:-1
position: 128336
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:128540:-1
position: 128540
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:125423-125914:-1:exon

position:125423:-1
position: 125423
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:125914:-1
position: 125914
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:124317-124766:-1:exon

position:124317:-1
position: 124317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:124766:-1
position: 124766
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 7
SIO_000628: feature:121740-122061:-1:exon

position:122061:-1
position: 122061
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686349
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686349
note: uncharacterized LOC125686349; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(140090..154010)
location: region:140090-154010:-1
so has part: feature:140090-154010:-1:exon
subclass of: SO_0000011

125686349
type: Gene
SIO_000068: ncbigene

position:140090:-1
position: 140090
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:154010:-1
position: 154010
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:140090-154010:-1:exon

LOC125686349
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686349
product: uncharacterized LOC125686349, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373778.1
SIO_010081: LOC125686349
subclass of: SO_0000673
so part of: LOC125686349
location: complement(join(140090..140111,142940..143554,153277..154010))
location: region:140090-154010:-1
so has part: feature:153277-154010:-1:exon
so has part: feature:142940-143554:-1:exon
so has part: feature:140090-140111:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:153277-154010:-1:exon

position:153277:-1
position: 153277
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:142940-143554:-1:exon

position:142940:-1
position: 142940
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:143554:-1
position: 143554
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:140090-140111:-1:exon

position:140111:-1
position: 140111
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686349
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686349
product: uncharacterized LOC125686349, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373777.1
SIO_010081: LOC125686349
subclass of: SO_0000673
so part of: LOC125686349
location: complement(join(140251..140398,142940..143554,153277..154010))
location: region:140251-154010:-1
so has part: feature:153277-154010:-1:exon
so has part: feature:142940-143554:-1:exon
so has part: feature:140251-140398:-1:exon

position:140251:-1
position: 140251
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153277-154010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:142940-143554:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:140251-140398:-1:exon

position:140398:-1
position: 140398
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686349
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686349
product: uncharacterized LOC125686349, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373779.1
SIO_010081: LOC125686349
subclass of: SO_0000673
so part of: LOC125686349
location: complement(join(141678..141709,142940..143554,153277..154010))
location: region:141678-154010:-1
so has part: feature:153277-154010:-1:exon
so has part: feature:142940-143554:-1:exon
so has part: feature:141678-141709:-1:exon

position:141678:-1
position: 141678
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:153277-154010:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:142940-143554:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:141678-141709:-1:exon

position:141709:-1
position: 141709
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686347
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686347
note: uncharacterized LOC125686347; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(171713..180382)
location: region:171713-180382:-1
so has part: feature:171713-180382:-1:exon
subclass of: SO_0000011

125686347
type: Gene
SIO_000068: ncbigene

position:171713:-1
position: 171713
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:180382:-1
position: 180382
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:171713-180382:-1:exon

LOC125686347
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686347
product: uncharacterized LOC125686347, transcript variant X1
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373773.1
SIO_010081: LOC125686347
subclass of: SO_0000673
so part of: LOC125686347
location: complement(join(171713..171741,176582..177483,177649..177853,177977..178181,179986..180382))
location: region:171713-180382:-1
so has part: feature:179986-180382:-1:exon
so has part: feature:177977-178181:-1:exon
so has part: feature:177649-177853:-1:exon
so has part: feature:176582-177483:-1:exon
so has part: feature:171713-171741:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:179986-180382:-1:exon

position:179986:-1
position: 179986
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:177977-178181:-1:exon

position:177977:-1
position: 177977
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:178181:-1
position: 178181
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:177649-177853:-1:exon

position:177649:-1
position: 177649
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:177853:-1
position: 177853
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:176582-177483:-1:exon

position:176582:-1
position: 176582
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:177483:-1
position: 177483
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:171713-171741:-1:exon

position:171741:-1
position: 171741
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686347
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686347
product: uncharacterized LOC125686347, transcript variant X2
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373774.1
SIO_010081: LOC125686347
subclass of: SO_0000673
so part of: LOC125686347
location: complement(join(173670..173749,176664..177483,177649..177853,177977..178181,179986..180382))
location: region:173670-180382:-1
so has part: feature:179986-180382:-1:exon
so has part: feature:177977-178181:-1:exon
so has part: feature:177649-177853:-1:exon
so has part: feature:176664-177483:-1:exon
so has part: feature:173670-173749:-1:exon

position:173670:-1
position: 173670
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:179986-180382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:177977-178181:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:177649-177853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:176664-177483:-1:exon

position:176664:-1
position: 176664
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:173670-173749:-1:exon

position:173749:-1
position: 173749
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686347
type: Non Coding RNA
subclass of: SO_0000655
RO_0002162: 64668
nc RNA class: lncRNA
gene: LOC125686347
product: uncharacterized LOC125686347, transcript variant X3
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XR_007373775.1
SIO_010081: LOC125686347
subclass of: SO_0000673
so part of: LOC125686347
location: complement(join(175891..176048,176664..177483,177649..177853,177977..178181,179986..180382))
location: region:175891-180382:-1
so has part: feature:179986-180382:-1:exon
so has part: feature:177977-178181:-1:exon
so has part: feature:177649-177853:-1:exon
so has part: feature:176664-177483:-1:exon
so has part: feature:175891-176048:-1:exon

position:175891:-1
position: 175891
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:179986-180382:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:177977-178181:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:177649-177853:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:176664-177483:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:175891-176048:-1:exon

position:176048:-1
position: 176048
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686342
type: Gene
subclass of: SO_0000704
RO_0002162: 64668
gene: LOC125686342
note: FACT complex subunit SPT16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
so part of: sequence
location: complement(183205..195511)
location: region:183205-195511:-1
so has part: feature:183205-195511:-1:exon
subclass of: SO_0000010

125686342
type: Gene
SIO_000068: ncbigene

position:183205:-1
position: 183205
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:195511:-1
position: 195511
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:183205-195511:-1:exon

LOC125686342
type: Messenger RNA
subclass of: SO_0000234
RO_0002162: 64668
gene: LOC125686342
product: FACT complex subunit SPT16-like
note: Derived by automated computational analysis using gene prediction method: Gnomon.
transcript id: XM_048930233.1
SIO_010081: LOC125686342
subclass of: SO_0000673
so part of: LOC125686342
location: complement(join(183205..183216,183990..184094,185658..185755,188023..188096,193317..193407,195305..195511))
location: region:183205-195511:-1
so has part: feature:195305-195511:-1:exon
so has part: feature:193317-193407:-1:exon
so has part: feature:188023-188096:-1:exon
so has part: feature:185658-185755:-1:exon
so has part: feature:183990-184094:-1:exon
so has part: feature:183205-183216:-1:exon

urn:…
SIO_000300: 1
SIO_000628: feature:195305-195511:-1:exon

position:195305:-1
position: 195305
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 2
SIO_000628: feature:193317-193407:-1:exon

position:193317:-1
position: 193317
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:193407:-1
position: 193407
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 3
SIO_000628: feature:188023-188096:-1:exon

position:188023:-1
position: 188023
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:188096:-1
position: 188096
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 4
SIO_000628: feature:185658-185755:-1:exon

position:185658:-1
position: 185658
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:185755:-1
position: 185755
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 5
SIO_000628: feature:183990-184094:-1:exon

position:183990:-1
position: 183990
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

position:184094:-1
position: 184094
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 6
SIO_000628: feature:183205-183216:-1:exon

position:183216:-1
position: 183216
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

LOC125686342
type: Coding Sequence
subclass of: SO_0000316
RO_0002162: 64668
gene: LOC125686342
note: Derived by automated computational analysis using gene prediction method: Gnomon.
codon start: 1
product: FACT complex subunit SPT16-like
translation: MGIRYKSYCSNLVRTLMVDPPQEMQEHYGFLLQLQDEMLRHMKHGTRLCEVYSAVMEAVRKQKPELLGKVTKNLGFAMGIEFREGSLVINSKNQHRLKKGMVFSVNVGLSELSCREGRPYAIFIGDTVLVEEDGPAVLLTAVKKKVKNVGIFLKVGAEFGAKKGRIWKYG
SIO_010081: LOC125686342
subclass of: SO_0000673
so part of: LOC125686342
location: complement(join(183205..183216,183990..184094,185658..185755,188023..188096,193317..193407,195305..195437))
location: region:183205-195437:-1
so has part: feature:195305-195437:-1:exon
so has part: feature:193317-193407:-1:exon
so has part: feature:188023-188096:-1:exon
so has part: feature:185658-185755:-1:exon
so has part: feature:183990-184094:-1:exon
so has part: feature:183205-183216:-1:exon

XP_048786190.1
type: Protein
SIO_000068: ncbiprotein

position:195437:-1
position: 195437
reference: sequence
type: ReverseStrandPosition
type: ExactPosition

urn:…
SIO_000300: 1
SIO_000628: feature:195305-195437:-1:exon

urn:…
SIO_000300: 2
SIO_000628: feature:193317-193407:-1:exon

urn:…
SIO_000300: 3
SIO_000628: feature:188023-188096:-1:exon

urn:…
SIO_000300: 4
SIO_000628: feature:185658-185755:-1:exon

urn:…
SIO_000300: 5
SIO_000628: feature:183990-184094:-1:exon

urn:…
SIO_000300: 6
SIO_000628: feature:183205-183216:-1:exon