Lagopus muta isolate bLagMut1 chromosome 33, bLagMut1 primary, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM041508.1.\nAssembly name: bLagMut1 primary\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/05/12. The original whole-genome shotgun project has the\naccession JAMCCT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 17-JUL-2021\nAssembly Method :: Minimap2 v. 0.15.1-r334; purge_dups v.\n 1.2.5; salsa v. 2.3\nAssembly Name :: bLagMut1 primary\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.75x\nSequencing Technology :: PacBio Sequel II HiFi; Dovetail genomics\n Hi-C; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: Lagopus muta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
telomerase protein component 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686216; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686216, transcript variant X2
uncharacterized LOC125686216, transcript variant X1
uncharacterized LOC125686213; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686213, transcript variant X2
uncharacterized protein LOC125686213 isoform X2
uncharacterized LOC125686213, transcript variant X1
uncharacterized protein LOC125686213 isoform X1
shematrin-like protein 2; Derived by automated computational analysis using gene prediction method: Gnomon.
shematrin-like protein 2, transcript variant X3
uncharacterized protein LOC125686203 isoform X3
shematrin-like protein 2, transcript variant X4
shematrin-like protein 2, transcript variant X1
uncharacterized protein LOC125686203 isoform X1
shematrin-like protein 2, transcript variant X2
uncharacterized LOC125686215; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686211; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686214; Derived by automated computational analysis using gene prediction method: Gnomon.
shematrin-like protein 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
uncharacterized LOC125686208; Derived by automated computational analysis using gene prediction method: Gnomon.
O-sialoglycoprotein endopeptidase; Derived by automated computational analysis using gene prediction method: Gnomon.
O-sialoglycoprotein endopeptidase, transcript variant X2
COORDINATES: polyA evidence [ECO:0006239]
O-sialoglycoprotein endopeptidase, transcript variant X3
O-sialoglycoprotein endopeptidase, transcript variant X1
tRNA N6-adenosine threonylcarbamoyltransferase isoform X2
tRNA N6-adenosine threonylcarbamoyltransferase isoform X3
tRNA N6-adenosine threonylcarbamoyltransferase isoform X1
apurinic/apyrimidinic endodeoxyribonuclease 1; Derived by automated computational analysis using gene prediction method: Gnomon.
apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
DNA-(apurinic or apyrimidinic site) endonuclease isoform X1
apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X2
apurinic/apyrimidinic endodeoxyribonuclease 1, transcript variant X3
DNA-(apurinic or apyrimidinic site) endonuclease isoform X2
DNA-(apurinic or apyrimidinic site) endonuclease isoform X3
uncharacterized LOC125686217; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686217, transcript variant X2
uncharacterized LOC125686217, transcript variant X1
purine nucleoside phosphorylase-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: purine nucleoside phosphorylase-like
uncharacterized LOC125686260; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686260, transcript variant X1
uncharacterized LOC125686260, transcript variant X2
uncharacterized protein LOC125686260 isoform X2
uncharacterized protein LOC125686260 isoform X1
protein NDRG2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
uncharacterized PE-PGRS family protein PE_PGRS54-like; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized PE-PGRS family protein PE_PGRS54-like, transcript variant X3
uncharacterized PE-PGRS family protein PE_PGRS54-like, transcript variant X1
uncharacterized PE-PGRS family protein PE_PGRS54-like, transcript variant X2
uncharacterized PE-PGRS family protein PE_PGRS54-like, transcript variant X4
uncharacterized PE-PGRS family protein PE_PGRS54-like
shematrin-like protein 3; Derived by automated computational analysis using gene prediction method: Gnomon.
complement factor B-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: complement factor B-like
uncharacterized LOC125686230; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686218; Derived by automated computational analysis using gene prediction method: Gnomon.
immediate early response 3; Derived by automated computational analysis using gene prediction method: Gnomon.
immediate early response 3, transcript variant X3
immediate early response 3, transcript variant X8
immediate early response 3, transcript variant X7
immediate early response 3, transcript variant X1
immediate early response 3, transcript variant X2
immediate early response 3, transcript variant X4
immediate early response 3, transcript variant X5
immediate early response 3, transcript variant X6
radiation-inducible immediate-early gene IEX-1 isoform X1
radiation-inducible immediate-early gene IEX-1 isoform X3
radiation-inducible immediate-early gene IEX-1 isoform X8
radiation-inducible immediate-early gene IEX-1 isoform X7
radiation-inducible immediate-early gene IEX-1 isoform X4
radiation-inducible immediate-early gene IEX-1 isoform X6
radiation-inducible immediate-early gene IEX-1 isoform X2
radiation-inducible immediate-early gene IEX-1 isoform X5
zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 345-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 19 Proteins
zinc finger protein 345-like, transcript variant X1
tRNA nuclease CdiA-2-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tRNA nuclease CdiA-2-like, transcript variant X3
tRNA nuclease CdiA-2-like, transcript variant X2
tRNA nuclease CdiA-2-like, transcript variant X1
uncharacterized protein LOC125686221 isoform X3
uncharacterized protein LOC125686221 isoform X2
collagen alpha-2(XI) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
transfer RNA leucine (anticodon CAA); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon CUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
interleukin 4 induced 1; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 3 Proteins
transfer RNA asparagine (anticodon GUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA threonine (anticodon UGU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA leucine (anticodon AAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA valine (anticodon AAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA proline (anticodon UGG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
tripartite motif containing 7; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif containing 7, transcript variant X2
tripartite motif containing 7, transcript variant X1
E3 ubiquitin-protein ligase TRIM7 isoform X2
E3 ubiquitin-protein ligase TRIM7 isoform X1
tripartite motif containing 7, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 14 Proteins
E3 ubiquitin-protein ligase TRIM7 isoform X3
transfer RNA lysine (anticodon CUU); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA valine (anticodon CAC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
transfer RNA glutamic acid (anticodon UUC); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
E3 ubiquitin-protein ligase TRIM39-like; Derived by automated computational analysis using gene prediction method: Gnomon.
E3 ubiquitin-protein ligase TRIM39-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 18 Proteins
E3 ubiquitin-protein ligase TRIM39-like, transcript variant X1
uncharacterized LOC125686220; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 1 member A1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
butyrophilin subfamily 1 member A1-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
butyrophilin subfamily 1 member A1-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 10 Proteins
E3 ubiquitin-protein ligase TRIM39-like isoform X1
butyrophilin subfamily 1 member A1-like isoform X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 25 Proteins
E3 ubiquitin-protein ligase TRIM39-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 11 Proteins
tripartite motif-containing protein 15-like isoform X3
tripartite motif-containing protein 15-like isoform X2
receptor for activated C kinase 1; Derived by automated computational analysis using gene prediction method: Gnomon.
receptor of activated protein C kinase 1
tripartite motif-containing protein 10-like; Derived by automated computational analysis using gene prediction method: Gnomon.
tripartite motif-containing protein 10-like, transcript variant X1
tripartite motif-containing protein 10-like, transcript variant X5
tripartite motif-containing protein 10-like, transcript variant X3
tripartite motif-containing protein 10-like, transcript variant X6
tripartite motif-containing protein 10-like, transcript variant X2
tripartite motif-containing protein 10-like, transcript variant X4
tripartite motif-containing protein 10-like isoform X1
tripartite motif-containing protein 10-like isoform X2
zinc finger protein RFP-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein RFP-like, transcript variant X7
zinc finger protein RFP-like, transcript variant X3
zinc finger protein RFP-like, transcript variant X4
zinc finger protein RFP-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 13 Proteins
zinc finger protein RFP-like, transcript variant X6
zinc finger protein RFP-like, transcript variant X5
zinc finger protein RFP-like, transcript variant X2
C-type lectin domain family 2 member E-like; Derived by automated computational analysis using gene prediction method: Gnomon.
C-type lectin domain family 2 member E-like, transcript variant X5
C-type lectin domain family 2 member E-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 17 Proteins
C-type lectin domain family 2 member E-like, transcript variant X2
C-type lectin domain family 2 member E-like, transcript variant X3
myelin-oligodendrocyte glycoprotein-like; Derived by automated computational analysis using gene prediction method: Gnomon.
myelin-oligodendrocyte glycoprotein-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 45 Proteins
myelin-oligodendrocyte glycoprotein-like, transcript variant X3
myelin-oligodendrocyte glycoprotein-like isoform X2
myelin-oligodendrocyte glycoprotein-like, transcript variant X1
myelin-oligodendrocyte glycoprotein-like isoform X1
C-type lectin domain family 2 member E-like, transcript variant X4
killer cell lectin-like receptor subfamily B member 1B allele A; Derived by automated computational analysis using gene prediction method: Gnomon.
killer cell lectin-like receptor subfamily B member 1B allele A
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 6 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: killer cell lectin-like receptor subfamily B member 1B allele A
uncharacterized protein LOC125686254 isoform X2
C-type lectin domain family 2 member E-like isoform X1
class II histocompatibility antigen, B-L beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, B-L beta chain-like
tapasin; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain containing 2; Derived by automated computational analysis using gene prediction method: Gnomon.
bromodomain containing 2, transcript variant X3
bromodomain containing 2, transcript variant X2
bromodomain containing 2, transcript variant X1
bromodomain containing 2, transcript variant X4
bromodomain-containing protein 2 isoform X2
bromodomain-containing protein 2 isoform X1
bromodomain-containing protein 2 isoform X3
bromodomain-containing protein 2 isoform X4
class II histocompatibility antigen, M alpha chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class II histocompatibility antigen, M alpha chain-like
HLA class II histocompatibility antigen, DM beta chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
HLA class II histocompatibility antigen, DM beta chain-like, transcript variant X1
HLA class II histocompatibility antigen, DM beta chain-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 7 Proteins
HLA class II histocompatibility antigen, DM beta chain-like isoform X2
HLA class II histocompatibility antigen, DM beta chain-like isoform X1
class I histocompatibility antigen, F10 alpha chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
class I histocompatibility antigen, F10 alpha chain-like
transporter 2, ATP binding cassette subfamily B member; Derived by automated computational analysis using gene prediction method: Gnomon.
transporter 2, ATP binding cassette subfamily B member
transporter 1, ATP binding cassette subfamily B member; Derived by automated computational analysis using gene prediction method: Gnomon.
transporter 1, ATP binding cassette subfamily B member
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 21 Proteins
complement C4-like; Derived by automated computational analysis using gene prediction method: Gnomon.
complement C4-like, transcript variant X1
complement C4-like, transcript variant X2
complement C4-like, transcript variant X3
complement C4-like, transcript variant X4
centromere protein A; Derived by automated computational analysis using gene prediction method: Gnomon.
steroid 21-hydroxylase; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
LOW QUALITY PROTEIN: steroid 21-hydroxylase
tenascin XB; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
leukotriene B4 receptor; Derived by automated computational analysis using gene prediction method: Gnomon.
T-cell surface glycoprotein CD1b-3-like; Derived by automated computational analysis using gene prediction method: Gnomon.
antigen-presenting glycoprotein CD1d-like; Derived by automated computational analysis using gene prediction method: Gnomon.
antigen-presenting glycoprotein CD1d-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 20 Proteins
antigen-presenting glycoprotein CD1d-like, transcript variant X1
antigen-presenting glycoprotein CD1d-like, transcript variant X3
antigen-presenting glycoprotein CD1d-like
uncharacterized LOC125686231; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686231, transcript variant X2
uncharacterized LOC125686231, transcript variant X3
uncharacterized LOC125686231, transcript variant X1
uncharacterized LOC125686231, transcript variant X6
uncharacterized LOC125686231, transcript variant X4
uncharacterized LOC125686231, transcript variant X5