Lagopus muta isolate bLagMut1 chromosome 31, bLagMut1 primary, whole genome shotgun sequence.
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Galloanserae; Galliformes; Phasianidae; Tetraoninae; Lagopus.
REFSEQ INFORMATION: The reference sequence is identical to\nCM041506.1.\nAssembly name: bLagMut1 primary\nThe genomic sequence for this RefSeq record is from the\nwhole-genome assembly released by the Vertebrate Genomes Project on\n2022/05/12. The original whole-genome shotgun project has the\naccession JAMCCT000000000.1.\n\n##Genome-Assembly-Data-START##\nAssembly Provider :: Vertebrate Genomes Project\nAssembly Date :: 17-JUL-2021\nAssembly Method :: Minimap2 v. 0.15.1-r334; purge_dups v.\n 1.2.5; salsa v. 2.3\nAssembly Name :: bLagMut1 primary\nDiploid :: Principal Pseudohaplotype\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 57.75x\nSequencing Technology :: PacBio Sequel II HiFi; Dovetail genomics\n Hi-C; Illumina NovaSeq\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Status :: Full annotation\nAnnotation Name :: Lagopus muta Annotation Release 100\nAnnotation Version :: 100\nAnnotation Pipeline :: NCBI eukaryotic genome annotation\n pipeline\nAnnotation Software Version :: 10.0\nAnnotation Method :: Best-placed RefSeq; Gnomon\nFeatures Annotated :: Gene; mRNA; CDS; ncRNA\n##Genome-Annotation-Data-END##
olfactory receptor 4N5-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 10AG1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 12 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 2 bases in 2 codons; substituted 1 base at 1 genomic stop codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: olfactory receptor 10AG1-like
uncharacterized LOC125686088; Derived by automated computational analysis using gene prediction method: Gnomon.
COORDINATES: polyA evidence [ECO:0006239]
zinc finger protein 501-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 501-like, transcript variant X7
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 140 Proteins
transfer RNA leucine (anticodon AAG); Derived by automated computational analysis using gene prediction method: tRNAscan-SE.
zinc finger protein 664-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 664-like, transcript variant X3
zinc finger protein 664-like, transcript variant X2
zinc finger protein 664-like, transcript variant X1
zinc finger protein 501-like, transcript variant X1
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 266 Proteins
zinc finger protein 501-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 22 Proteins
zinc finger protein 501-like, transcript variant X3
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 379 Proteins
zinc finger protein 501-like, transcript variant X4
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 133 Proteins
zinc finger protein 501-like, transcript variant X6
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 134 Proteins
zinc finger protein 501-like, transcript variant X5
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 131 Proteins
zinc finger protein 239-like; Derived by automated computational analysis using gene prediction method: Gnomon.
olfactory receptor 14A16-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 8 Proteins
zinc finger protein 135-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger protein 135-like, transcript variant X2
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 2 Proteins
zinc finger protein 135-like, transcript variant X1
zinc finger protein 566-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 53 Proteins
zinc finger protein 660-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 32 Proteins
zinc finger protein 383-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 252 Proteins
zinc finger protein 345-like; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 138 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
LOW QUALITY PROTEIN: zinc finger protein 345-like
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 78 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 76 Proteins
zinc finger protein 485-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 85 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 43 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 67 Proteins
uncharacterized LOC125686105; Derived by automated computational analysis using gene prediction method: Gnomon.
The sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 4 Proteins
The sequence of the model RefSeq protein was modified relative to this genomic sequence to represent the inferred CDS: inserted 1 base in 1 codon; deleted 2 bases in 1 codon; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 5 Proteins
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 317 Proteins
zinc finger protein 420-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 39 Proteins
coiled-coil domain-containing protein 81-like; Derived by automated computational analysis using gene prediction method: Gnomon.
coiled-coil domain-containing protein 81-like, transcript variant X4
coiled-coil domain-containing protein 81-like, transcript variant X3
basic salivary proline-rich protein 1-like; Derived by automated computational analysis using gene prediction method: Gnomon.
basic salivary proline-rich protein 1-like
zinc finger protein 764-like; Derived by automated computational analysis using gene prediction method: Gnomon.
Derived by automated computational analysis using gene prediction method: Gnomon. Supporting evidence includes similarity to: 1 Protein
ubiquitin carboxyl-terminal hydrolase 48-like; Derived by automated computational analysis using gene prediction method: Gnomon.
ubiquitin carboxyl-terminal hydrolase 48-like
coiled-coil domain-containing protein 81-like, transcript variant X2
coiled-coil domain-containing protein 81-like, transcript variant X6
coiled-coil domain-containing protein 81-like, transcript variant X5
coiled-coil domain-containing protein 81-like, transcript variant X1
uncharacterized protein LOC125686110 isoform X3
coiled-coil domain-containing protein 81-like isoform X2
coiled-coil domain-containing protein 81-like isoform X1
collagen alpha-2(VI) chain-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger CCCH domain-containing protein 11A-like; Derived by automated computational analysis using gene prediction method: Gnomon.
zinc finger CCCH domain-containing protein 11A-like, transcript variant X9
zinc finger CCCH domain-containing protein 11A-like, transcript variant X5
zinc finger CCCH domain-containing protein 11A-like, transcript variant X1
zinc finger CCCH domain-containing protein 11A-like, transcript variant X4
zinc finger CCCH domain-containing protein 11A-like, transcript variant X3
zinc finger CCCH domain-containing protein 11A-like, transcript variant X6
zinc finger CCCH domain-containing protein 11A-like, transcript variant X7
zinc finger CCCH domain-containing protein 11A-like, transcript variant X8
zinc finger CCCH domain-containing protein 11A-like, transcript variant X2
zinc finger CCCH domain-containing protein 11A-like, transcript variant X10
zinc finger CCCH domain-containing protein 11A-like
uncharacterized LOC125686092; Derived by automated computational analysis using gene prediction method: Gnomon.
uncharacterized LOC125686092, transcript variant X2
uncharacterized LOC125686092, transcript variant X1