Aeromonas salmonicida strain AS3 plasmid unnamed, complete sequence.
Bacteria; Pseudomonadota; Gammaproteobacteria; Aeromonadales; Aeromonadaceae; Aeromonas.
Comparative genome analysis of Aeromonas salmonicida strains
Submitted (01-NOV-2022) Research Center for Aquatic Animal Health Assessment, Shenzhen Institute of Guangdong Ocean University, No. 3, Binhai 2nd Road, Dapeng New District, Shenzhen, Guangdong 518120, China
REFSEQ INFORMATION: The reference sequence is identical to\nCP110646.1.\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Genome-Assembly-Data-START##\nAssembly Method :: flye v. 2.7\nGenome Representation :: Full\nExpected Final Version :: Yes\nGenome Coverage :: 700x\nSequencing Technology :: Oxford Nanopore PromethION\n##Genome-Assembly-Data-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 02/01/2023 17:24:49\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 4,639\nCDSs (total) :: 4,475\nGenes (coding) :: 4,415\nCDSs (with protein) :: 4,415\nGenes (RNA) :: 164\nrRNAs :: 11, 10, 10 (5S, 16S, 23S)\ncomplete rRNAs :: 11, 10, 10 (5S, 16S, 23S)\ntRNAs :: 129\nncRNAs :: 4\nPseudo Genes (total) :: 60\nCDSs (without protein) :: 60\nPseudo Genes (ambiguous residues) :: 0 of 60\nPseudo Genes (frameshifted) :: 29 of 60\nPseudo Genes (incomplete) :: 47 of 60\nPseudo Genes (internal stop) :: 14 of 60\nPseudo Genes (multiple problems) :: 25 of 60\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
COORDINATES: similar to AA sequence:RefSeq:WP_005321908.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF027410.2
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: protein motif:HMM:NF037905.2
COORDINATES: protein motif:HMM:NF037509.2
COORDINATES: similar to AA sequence:RefSeq:WP_003165060.1
GO:0008745 - N-acetylmuramoyl-L-alanine amidase activity [Evidence IEA]
GO:0009253 - peptidoglycan catabolic process [Evidence IEA]
COORDINATES: protein motif:HMM:NF012493.2
COORDINATES: protein motif:HMM:NF018886.2
COORDINATES: similar to AA sequence:RefSeq:WP_017412855.1
COORDINATES: similar to AA sequence:RefSeq:WP_012848468.1
type II toxin-antitoxin system Phd/YefM family antitoxin
COORDINATES: similar to AA sequence:RefSeq:WP_004187415.1
COORDINATES: protein motif:HMM:NF016921.2
COORDINATES: similar to AA sequence:RefSeq:WP_017412428.1
helix-turn-helix transcriptional regulator
COORDINATES: similar to AA sequence:RefSeq:WP_010566423.1
COORDINATES: similar to AA sequence:RefSeq:WP_009307985.1
COORDINATES: similar to AA sequence:RefSeq:WP_005310171.1
COORDINATES: protein motif:HMM:NF025447.2
COORDINATES: similar to AA sequence:RefSeq:WP_016191856.1
COORDINATES: protein motif:HMM:NF024784.2
HNH endonuclease signature motif containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_010792842.1
COORDINATES: similar to AA sequence:RefSeq:WP_008099676.1
COORDINATES: protein motif:HMM:NF013540.2
COORDINATES: similar to AA sequence:RefSeq:WP_000362482.1
COORDINATES: similar to AA sequence:RefSeq:WP_012251226.1
COORDINATES: similar to AA sequence:RefSeq:WP_019767481.1
COORDINATES: similar to AA sequence:RefSeq:WP_012548869.1
COORDINATES: protein motif:HMM:NF018148.2
COORDINATES: similar to AA sequence:RefSeq:WP_017634087.1
COORDINATES: protein motif:HMM:NF012798.2
GO:0015074 - DNA integration [Evidence IEA]; GO:0006310 - DNA recombination [Evidence IEA]
COORDINATES: protein motif:HMM:NF017315.2
incomplete; partial in the middle of a contig; missing C-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: similar to AA sequence:RefSeq:WP_005337495.1
COORDINATES: similar to AA sequence:RefSeq:WP_016063647.1
COORDINATES: protein motif:HMM:NF014342.2
GO:0003676 - nucleic acid binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF028096.2
Ref family recombination enhancement nuclease
COORDINATES: similar to AA sequence:RefSeq:WP_001379116.1
COORDINATES: protein motif:HMM:NF025717.2
COORDINATES: protein motif:HMM:NF016595.2
COORDINATES: similar to AA sequence:RefSeq:WP_018865117.1
COORDINATES: protein motif:HMM:NF013618.2
transglycosylase SLT domain-containing protein
COORDINATES: protein motif:HMM:NF037250.2
COORDINATES: similar to AA sequence:RefSeq:WP_017686415.1