Methanohalobium evestigatum Z-7303 plasmid pMETEV01, complete sequence.
Archaea; Euryarchaeota; Stenosarchaea group; Methanomicrobia; Methanosarcinales; Methanosarcinaceae; Methanohalobium.
Complete sequence plasmid of Methanohalobium evestigatum Z-7303
Submitted (09-JUN-2010) US DOE Joint Genome Institute, 2800 Mitchell Drive B310, Walnut Creek, CA 94598-1698, USA
REFSEQ INFORMATION: The reference sequence is identical to\nCP002070.1.\nURL -- http://www.jgi.doe.gov\nJGI Project ID: 4086216\nSource DNA and organism available from William B. Whitman\n(whitman@uga.edu)\nContacts: Iain J. Anderson (IJAnderson@lbl.gov)\n Tanja Woyke (microbe@cuba.jgi-psf.org)\nAnnotation done by JGI-ORNL and JGI-PGF\nFinishing done by JGI-LANL\nFinished microbial genomes have been curated to close all gaps with\ngreater than 98% coverage of at least two independent clones. Each\nbase pair has a minimum q (quality) value of 30 and the total error\nrate is less than one per 50000.\nThe JGI and collaborators endorse the principles for the\ndistribution and use of large scale sequencing data adopted by the\nlarger genome sequencing community and urge users of this data to\nfollow them. it is our intention to publish the work of this\nproject in a timely fashion and we welcome collaborative\ninteraction on the project and analysis.\n(http://www.genome.gov/page.cfm?pageID=10506376).\nThe annotation was added by the NCBI Prokaryotic Genome Annotation\nPipeline (PGAP). Information about PGAP can be found here:\nhttps://www.ncbi.nlm.nih.gov/genome/annotation_prok/\n\n##Metadata-START##\nOrganism Display Name :: Methanohalobium evestigatum Z-7303, DSM\n 3721\nCulture Collection ID :: DSM 3721, OCM 161\nGOLD Stamp ID :: Gi01749\nGreengenes ID :: 425\nFunding Program :: DOE-LSP 2007\nIsolation Site :: Microbial mat community in Crimea, USSR\nIsolation Country :: USSR\nLatitude :: 45.3453\nLongitude :: 34.49973\nOxygen Requirement :: Anaerobe\nTemperature Range :: Thermophile\nTemperature Optimum :: 50C\nSalinity :: Halophile\npH :: 7\nGram Staining :: gram-\nDiseases :: None\nHabitat :: Fresh water\nEnergy Source :: Lithotroph, Autotroph\n##Metadata-END##\n\n##Genome-Annotation-Data-START##\nAnnotation Provider :: NCBI RefSeq\nAnnotation Date :: 12/28/2022 01:26:04\nAnnotation Pipeline :: NCBI Prokaryotic Genome\n Annotation Pipeline (PGAP)\nAnnotation Method :: Best-placed reference protein\n set; GeneMarkS-2+\nAnnotation Software revision :: 6.4\nFeatures Annotated :: Gene; CDS; rRNA; tRNA; ncRNA\nGenes (total) :: 2,453\nCDSs (total) :: 2,395\nGenes (coding) :: 2,342\nCDSs (with protein) :: 2,342\nGenes (RNA) :: 58\nrRNAs :: 2, 2, 2 (5S, 16S, 23S)\ncomplete rRNAs :: 2, 2, 2 (5S, 16S, 23S)\ntRNAs :: 50\nncRNAs :: 2\nPseudo Genes (total) :: 53\nCDSs (without protein) :: 53\nPseudo Genes (ambiguous residues) :: 0 of 53\nPseudo Genes (frameshifted) :: 22 of 53\nPseudo Genes (incomplete) :: 21 of 53\nPseudo Genes (internal stop) :: 22 of 53\nPseudo Genes (multiple problems) :: 10 of 53\n##Genome-Annotation-Data-END##\nCOMPLETENESS: full length.
type strain of Methanohalobium evestigatum
COORDINATES: protein motif:HMM:TIGR02928.1
Derived by automated computational analysis using gene prediction method: Protein Homology.
orc1/cdc6 family replication initiation protein
COORDINATES: protein motif:HMM:NF025599.2
internal stop; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: similar to AA sequence:RefSeq:WP_076612386.1
GO:0004803 - transposase activity [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_013195648.1
COORDINATES: similar to AA sequence:RefSeq:WP_013195651.1
COORDINATES: protein motif:HMM:TIGR00229.1
COORDINATES: protein motif:HMM:NF013752.2
GO:0003677 - DNA binding [Evidence IEA]; GO:0004803 - transposase activity [Evidence IEA]
GO:0006313 - transposition, DNA-mediated [Evidence IEA]
COORDINATES: protein motif:HMM:NF018420.2
COORDINATES: similar to AA sequence:RefSeq:WP_013195652.1
RNA-guided endonuclease TnpB family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013194291.1
GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: protein motif:HMM:TIGR04213.1
COORDINATES: ab initio prediction:GeneMarkS-2+
Derived by automated computational analysis using gene prediction method: GeneMarkS-2+.
COORDINATES: similar to AA sequence:RefSeq:WP_015325192.1
GO:0016779 - nucleotidyltransferase activity [Evidence IEA]
GO:0009058 - biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011500331.1
GO:0008966 - phosphoglucosamine mutase activity [Evidence IEA]
GO:0009103 - lipopolysaccharide biosynthetic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
COORDINATES: similar to AA sequence:RefSeq:WP_011022962.1
GO:0004360 - glutamine-fructose-6-phosphate transaminase (isomerizing) activity [Evidence IEA]
GO:0006040 - amino sugar metabolic process [Evidence IEA]; GO:0009252 - peptidoglycan biosynthetic process [Evidence IEA]
glutamine--fructose-6-phosphate transaminase (isomerizing)
COORDINATES: similar to AA sequence:RefSeq:WP_011022961.1
COORDINATES: similar to AA sequence:RefSeq:WP_013194278.1
COORDINATES: protein motif:HMM:NF025825.2
COORDINATES: similar to AA sequence:RefSeq:WP_011024341.1
GO:0003824 - catalytic activity [Evidence IEA]
NAD-dependent epimerase/dehydratase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_015411973.1
COORDINATES: similar to AA sequence:RefSeq:WP_011033088.1
phenylacetate--CoA ligase family protein
COORDINATES: protein motif:HMM:NF012744.2
COORDINATES: protein motif:HMM:NF024736.2
COORDINATES: similar to AA sequence:RefSeq:WP_013194684.1
COORDINATES: protein motif:HMM:NF021616.2
COORDINATES: similar to AA sequence:RefSeq:WP_015148917.1
COORDINATES: similar to AA sequence:RefSeq:WP_013194592.1
COORDINATES: protein motif:HMM:NF024860.2
COORDINATES: similar to AA sequence:RefSeq:WP_013194599.1
COORDINATES: similar to AA sequence:RefSeq:WP_013195676.1
COORDINATES: similar to AA sequence:RefSeq:WP_013194655.1
COORDINATES: similar to AA sequence:RefSeq:WP_013194662.1
COORDINATES: similar to AA sequence:RefSeq:WP_008318094.1
type II toxin-antitoxin system PemK/MazF family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013194650.1
AbrB/MazE/SpoVT family DNA-binding domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013194617.1
incomplete; partial in the middle of a contig; missing N-terminus; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF019151.2
COORDINATES: protein motif:HMM:NF015210.2
COORDINATES: protein motif:HMM:NF012311.2
S-layer protein domain-containing protein
COORDINATES: protein motif:HMM:NF025181.2
COORDINATES: protein motif:HMM:NF014028.2
COORDINATES: similar to AA sequence:RefSeq:WP_013194816.1
COORDINATES: protein motif:HMM:NF024487.2
COORDINATES: protein motif:HMM:NF014567.2
COORDINATES: similar to AA sequence:RefSeq:WP_013194616.1
COORDINATES: protein motif:HMM:NF016214.2
COORDINATES: similar to AA sequence:RefSeq:WP_015412395.1
COORDINATES: similar to AA sequence:RefSeq:WP_015052593.1
COORDINATES: similar to AA sequence:RefSeq:WP_015052607.1
type II CAAX endopeptidase family protein
COORDINATES: similar to AA sequence:RefSeq:WP_013036596.1
COORDINATES: protein motif:HMM:TIGR04279.1
COORDINATES: similar to AA sequence:RefSeq:WP_011034806.1
COORDINATES: similar to AA sequence:RefSeq:WP_013195701.1
COORDINATES: similar to AA sequence:RefSeq:WP_013194899.1
COORDINATES: protein motif:HMM:NF019407.2
type IV pilin N-terminal domain-containing protein
COORDINATES: protein motif:HMM:NF017537.2
COORDINATES: similar to AA sequence:RefSeq:WP_013194548.1
COORDINATES: similar to AA sequence:RefSeq:WP_013193930.1
COORDINATES: similar to AA sequence:RefSeq:WP_013195265.1
GO:0000160 - phosphorelay signal transduction system [Evidence IEA]
COORDINATES: protein motif:HMM:NF012464.2
COORDINATES: similar to AA sequence:RefSeq:WP_013038116.1
COORDINATES: similar to AA sequence:RefSeq:WP_076612178.1
programmed frameshift; Derived by automated computational analysis using gene prediction method: Protein Homology.
COORDINATES: protein motif:HMM:NF037269.2
methanogen output domain 1-containing protein
COORDINATES: protein motif:HMM:NF014126.2
COORDINATES: similar to AA sequence:RefSeq:WP_013036557.1
type II toxin-antitoxin system RelE/ParE family toxin
COORDINATES: similar to AA sequence:RefSeq:WP_013036556.1
zinc finger C2H2-type domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_076612384.1
frameshifted; Derived by automated computational analysis using gene prediction method: Protein Homology.
fibronectin type III domain-containing protein
COORDINATES: similar to AA sequence:RefSeq:WP_013195738.1
COORDINATES: protein motif:HMM:TIGR04207.1
COORDINATES: protein motif:HMM:NF024867.2
COORDINATES: similar to AA sequence:RefSeq:WP_013195078.1
IS200/IS605 family element RNA-guided endonuclease TnpB
COORDINATES: protein motif:HMM:NF039533.1
COORDINATES: similar to AA sequence:RefSeq:WP_013194795.1
GO:0005515 - protein binding [Evidence IEA]
COORDINATES: protein motif:HMM:NF020036.2
COORDINATES: protein motif:HMM:NF024583.2
COORDINATES: protein motif:HMM:NF024793.2